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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 2525R-1 
 Symbol Hus1-like  Full Name Hus1-like 
 CG No CG2525  Old CG No CG2525 
 Synonyms Hus1, CG2525, Hus1-like, hus1 
 Accession No (Link to NCBI) NM_058078.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Cho Y, Lai CM, Lin KY, Hsu HJ.
A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.
G3 (Bethesda) (2018) 8(7) 2345-2354 [ PubMed ID = 29764959 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCACTTTAACCAAGCTGGCGA 
 Primer Seq. 3'
aatctagaggtaccCTGAAACTCCAGGCTGGGTGA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CCACTTTAAC CAAGCTGGCG AANGATTGTG TGATGATTCT GGGCTCTCGG CAGATGCATT 
0061 TTATCGTGAA CGAGGATCAG AGCTCCGCTG CATCGCCCTT GGTTTGGGGC AGGAATTACA 
0121 GCTGAGGAGT ATTTTCCGGA GTATCGCATG GAGGCTGCTN CACCCGGATC AGGAGTACAT 
0181 AGTTCTAGGC GTGTCTCTCG GCGAATCTCG GAAGAGCTTT ATCTGTGCTT CGTGGTGGAG 
0241 GCGTAAACAG CTGCAAACTG AAGCTTCAAA GAATTCAGTT TCCGTGCATT TCGGTAATAG 
0301 CCTCGGTGCT TACGTCGTCT TCAACAGAAG CCCGTGAAGT GGTGCACGAT GTTCCAGTGA 
0361 CCATAATCCC GGGCAGCGAT TGGTCTGCCT ACGTTGTACC CAGAGTTCCA AACTCACAGT 
0421 TGGCTTTGGG CCTACCAAGC CTAAGATTGC TCAAAAGTCT CATTGACAAG CTGAAGAATA 
0481 TATCACCCAG CCTGGAGTTT CAG 
 in silico PCR Fragment
0001 CCACTTTAAC CAAGCTGGCG AAAGATTGTG TGATGATTCT GGGCTCTCGG CAGATGCATT 
0061 TTATCGTGAA CGAGGATCAG AGCTCCGCTG CATCGCCCTT GGTTT-GGGC AGGAATTACA 
0121 GCTGAGGAGT ATTTTCCGGA GTATCGCATG GAGGCTGCT- CACCCGGATC AGGAGTACAT 
0181 AGTTCTAGGC GTGTCT-TCG GCGAATCTCG GAAGAGCTTT ATCTGTGCTT CGTGGTGGAG 
0241 GCGTAAACAG CTGCAAACTG AAGCTTCAAA GAATTCAGTT TCCGTGCATT TCGGTAATAG 
0301 CCTCGGTGCT TACGTCGTCT TCAACAGAAG CCCGTGAAGT GGTGCACGAT GTTCCAGTGA 
0361 CCATAATCCC GGGCAGCGAT TGGTCTGCCT ACGTTGTACC CAGAGTTCCA AACTCACAGT 
0421 TGGCTTTGGG CCTACCAAGC CTAAGATTGC TCAAAAGTCT CATTGACAAG CTGAAGAATA 
0481 TATCACCCAG CCTGGAGTTT CAG 
 Assemble Data

2525R-1.IR_full       1   CCACTTTAACCAAGCTGGCGAANGATTGTGTGATGATTCTGGGCTCTCGGCAGATGCATT 60
                          |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
2525R-1.in silico     1   CCACTTTAACCAAGCTGGCGAAAGATTGTGTGATGATTCTGGGCTCTCGGCAGATGCATT 60


2525R-1.IR_full       61  TTATCGTGAACGAGGATCAGAGCTCCGCTGCATCGCCCTTGGTTTGGGGCAGGAATTACA 120
                          ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
2525R-1.in silico     61  TTATCGTGAACGAGGATCAGAGCTCCGCTGCATCGCCCTTGGTTT-GGGCAGGAATTACA 120


2525R-1.IR_full       121 GCTGAGGAGTATTTTCCGGAGTATCGCATGGAGGCTGCTNCACCCGGATCAGGAGTACAT 180
                          ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
2525R-1.in silico     121 GCTGAGGAGTATTTTCCGGAGTATCGCATGGAGGCTGCT-CACCCGGATCAGGAGTACAT 180


2525R-1.IR_full       181 AGTTCTAGGCGTGTCTCTCGGCGAATCTCGGAAGAGCTTTATCTGTGCTTCGTGGTGGAG 240
                          |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
2525R-1.in silico     181 AGTTCTAGGCGTGTCT-TCGGCGAATCTCGGAAGAGCTTTATCTGTGCTTCGTGGTGGAG 240


2525R-1.IR_full       241 GCGTAAACAGCTGCAAACTGAAGCTTCAAAGAATTCAGTTTCCGTGCATTTCGGTAATAG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2525R-1.in silico     241 GCGTAAACAGCTGCAAACTGAAGCTTCAAAGAATTCAGTTTCCGTGCATTTCGGTAATAG 300


2525R-1.IR_full       301 CCTCGGTGCTTACGTCGTCTTCAACAGAAGCCCGTGAAGTGGTGCACGATGTTCCAGTGA 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2525R-1.in silico     301 CCTCGGTGCTTACGTCGTCTTCAACAGAAGCCCGTGAAGTGGTGCACGATGTTCCAGTGA 360


2525R-1.IR_full       361 CCATAATCCCGGGCAGCGATTGGTCTGCCTACGTTGTACCCAGAGTTCCAAACTCACAGT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2525R-1.in silico     361 CCATAATCCCGGGCAGCGATTGGTCTGCCTACGTTGTACCCAGAGTTCCAAACTCACAGT 420


2525R-1.IR_full       421 TGGCTTTGGGCCTACCAAGCCTAAGATTGCTCAAAAGTCTCATTGACAAGCTGAAGAATA 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2525R-1.in silico     421 TGGCTTTGGGCCTACCAAGCCTAAGATTGCTCAAAAGTCTCATTGACAAGCTGAAGAATA 480


2525R-1.IR_full       481 TATCACCCAGCCTGGAGTTTCAG 503
                          |||||||||||||||||||||||
2525R-1.in silico     481 TATCACCCAGCCTGGAGTTTCAG 503

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_058078.2  CG2525-RA (Hus1-like), mRNA 
0   NM_176521.1  CG32491-RT, transcript variant T (mod(mdg4)), mRNA 
0   NM_140532.2  CG7372-RA (CG7372), mRNA 
0   NM_137031.2  CG4840-RA (CG4840), mRNA 
0   NM_001038725.1  CG40478-RE, transcript variant E (Dyrk3), mRNA 
0   NM_001038723.1  CG40478-RC, transcript variant C (Dyrk3), mRNA 
0   NM_001038721.1  CG40478-RA, transcript variant A (Dyrk3), mRNA 
0   NM_001038724.1  CG40478-RD, transcript variant D (Dyrk3), mRNA 
0   NM_001038722.1  CG40478-RB, transcript variant B (Dyrk3), mRNA 
0   NM_001015079.1  CG40478-PB.3 (CG40478), mRNA 
0   NM_001015078.1  CG40478-PA.3 (CG40478), mRNA 
0   NM_001015080.1  CG40478-PC.3 (CG40478), mRNA 
0   NM_140048.2  CG4080-RA (CG4080), mRNA 
0   NM_057546.2  CG3090-RA, transcript variant A (Sox14), mRNA 
0   NM_165627.1  CG8740-RC, transcript variant C (CG8740), mRNA 
0   NM_165626.1  CG8740-RB, transcript variant B (CG8740), mRNA 
0   NM_136567.2  CG8740-RA, transcript variant A (CG8740), mRNA 
0   NM_143794.2  CG7129-RA, transcript variant A (l(3)05822), mRNA 
0   NM_169802.1  CG7129-RB, transcript variant B (l(3)05822), mRNA 
0   NM_164933.1  CG7438-RB, transcript variant B (Myo31DF), mRNA 
0   NM_134508.2  CG32528-RA (CG32528), mRNA 
0   NM_078604.3  CG32592-RA (hiw), mRNA 
0   NM_169616.2  CG4154-RA, transcript variant A (Gyc88E), mRNA 
0   NM_001043246.1  CG4154-RD, transcript variant D (Gyc88E), mRNA 
0   NM_142167.2  CG4154-RC, transcript variant C (Gyc88E), mRNA 
0   NM_206287.1  CG8571-RB, transcript variant B (smid), mRNA 
0   NM_079235.2  CG8571-RA, transcript variant A (smid), mRNA 
0   NM_132460.2  CG18292-RA (CG18292), mRNA 
0   NM_168302.1  CG5735-RA, transcript variant A (orb2), mRNA 
0   NM_168300.1  CG5735-RC, transcript variant C (orb2), mRNA 

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