Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
2341R-3 |
Symbol |
Ccp84Ad |
Full Name |
Ccp84Ad |
CG No |
CG2341 |
Old CG No |
CG2341 |
Synonyms |
unnamed, cc5, CG2341, BG:DS00004.4, Ccp84Ad, Ccp |
Accession No (Link to NCBI) |
NM_141423.2 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCAAGTTCATCGCCCTCTTCGC |
Primer Seq. 3' |
aatctagaggtaccGGAGCCACGGTCTTGACCACA |
Predicted Fragment Size |
477 |
IR fragment full Seq |
0001 CAAGTTCATC GCCCTCTTCG CCCTGATCGC CGCCGCCAGC GCGCGGTGTT CTGCCCGTCC
0061 AGCAGGTGTA CCACGCCGCC CCCGCCGTGG CCACCTACGC CCAAGCACCT GTCGCCGTTG
0121 CTCACGCCCA GCCGGTTCTT GCCAAGGCCG CCGAGGAGTA CGATCCCCAT CCCCAGTACA
0181 AGTACGCCTA CGATGTTCAG GACTCCCTCT CCGGAGACTC CAAGAGCCAG GTGGAGGANG
0241 CGCGATGGCG ACGTGGTCCG CGGAGAGTAC TCCCTGATNC GACGCCGATG GCTACAAGAG
0301 AACCGTCCAG TACACCGCCG ATCCCATCAA CGGATTCAAC GCCGTTGTCA ACCGTGAGCC
0361 CCTGGTCAAG GCCGTCGCCG TTGCCCCCGT TGTGAAGACC GTCGCCGCTC CCGTTGCCCA
0421 CTACGCCGCC CCTGCTGTCG CCCATTACGC NTGCTCCCGC TGTGGTCAAG ACCGTGGCTC
0481 C |
in silico PCR Fragment |
0001 CAAGTTCATC GCCCTCTTCG CCCTGATCGC CGCCGCCAGC GC-CGGTGTT CTGCCCGTCC
0061 AGCAGGTGTA CCACGCCGCC CCCGCCGTGG CCACCTACGC CCAAGCACCT GTCGCCGTTG
0121 CTCACGCCCA GCCGGTTCTT GCCAAGGCCG CCGAGGAGTA CGATCCCCAT CCCCAGTACA
0181 AGTACGCCTA CGATGTTCAG GACTCCCTCT CCGGAGACTC CAAGAGCCAG GTGGAGGA-G
0241 CGCGATGGCG ACGTGGTCCG CGGAGAGTAC TCCCTGAT-C GACGCCGATG GCTACAAGAG
0301 AACCGTCCAG TACACCGCCG ATCCCATCAA CGGATTCAAC GCCGTTGTCA ACCGTGAGCC
0361 CCTGGTCAAG GCCGTCGCCG TTGCCCCCGT TGTGAAGACC GTCGCCGCTC CCGTTGCCCA
0421 CTACGCCGCC CCTGCTGTCG CCCATTACGC -TGCTCCCGC TGTGGTCAAG ACCGTGGCTC
0481 C |
Assemble Data |
2341R-3.IR_full 1 CAAGTTCATCGCCCTCTTCGCCCTGATCGCCGCCGCCAGCGCGCGGTGTTCTGCCCGTCC 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
2341R-3.in silico 1 CAAGTTCATCGCCCTCTTCGCCCTGATCGCCGCCGCCAGCGC-CGGTGTTCTGCCCGTCC 60
2341R-3.IR_full 61 AGCAGGTGTACCACGCCGCCCCCGCCGTGGCCACCTACGCCCAAGCACCTGTCGCCGTTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2341R-3.in silico 61 AGCAGGTGTACCACGCCGCCCCCGCCGTGGCCACCTACGCCCAAGCACCTGTCGCCGTTG 120
2341R-3.IR_full 121 CTCACGCCCAGCCGGTTCTTGCCAAGGCCGCCGAGGAGTACGATCCCCATCCCCAGTACA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2341R-3.in silico 121 CTCACGCCCAGCCGGTTCTTGCCAAGGCCGCCGAGGAGTACGATCCCCATCCCCAGTACA 180
2341R-3.IR_full 181 AGTACGCCTACGATGTTCAGGACTCCCTCTCCGGAGACTCCAAGAGCCAGGTGGAGGANG 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
2341R-3.in silico 181 AGTACGCCTACGATGTTCAGGACTCCCTCTCCGGAGACTCCAAGAGCCAGGTGGAGGA-G 240
2341R-3.IR_full 241 CGCGATGGCGACGTGGTCCGCGGAGAGTACTCCCTGATNCGACGCCGATGGCTACAAGAG 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
2341R-3.in silico 241 CGCGATGGCGACGTGGTCCGCGGAGAGTACTCCCTGAT-CGACGCCGATGGCTACAAGAG 300
2341R-3.IR_full 301 AACCGTCCAGTACACCGCCGATCCCATCAACGGATTCAACGCCGTTGTCAACCGTGAGCC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2341R-3.in silico 301 AACCGTCCAGTACACCGCCGATCCCATCAACGGATTCAACGCCGTTGTCAACCGTGAGCC 360
2341R-3.IR_full 361 CCTGGTCAAGGCCGTCGCCGTTGCCCCCGTTGTGAAGACCGTCGCCGCTCCCGTTGCCCA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2341R-3.in silico 361 CCTGGTCAAGGCCGTCGCCGTTGCCCCCGTTGTGAAGACCGTCGCCGCTCCCGTTGCCCA 420
2341R-3.IR_full 421 CTACGCCGCCCCTGCTGTCGCCCATTACGCNTGCTCCCGCTGTGGTCAAGACCGTGGCTC 480
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
2341R-3.in silico 421 CTACGCCGCCCCTGCTGTCGCCCATTACGC-TGCTCCCGCTGTGGTCAAGACCGTGGCTC 480
2341R-3.IR_full 481 C 481
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2341R-3.in silico 481 C 481
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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++ |
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DB |
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+ |
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DC |
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+ |
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DM |
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+ |
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VM |
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+ |
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VB |
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Dcompartment |
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Penetrance |
+ |
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