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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
2168R-2 |
Symbol |
RpS3A |
Full Name |
Ribosomal protein S3A |
CG No |
CG2168 |
Old CG No |
CG2168 |
Synonyms |
CG2168, RPS3A, M(4)101, RpS3a, RPS3a, clone 2.29, M57g, C3, M[57g], M(4)57g, M(4)[57g], l(4)102ABa, anon-EST:Liang-2.29, RpS3A |
Accession No (Link to NCBI) |
NM_079879.2 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Cho Y, Lai CM, Lin KY, Hsu HJ. A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development. G3 (Bethesda) (2018) 8(7) 2345-2354
[
PubMed ID = 29764959
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgAGGTCTTTCCAAGGGTGGTAA |
Primer Seq. 3' |
aatctagaggtaccGTACCCATCTACAGTCTTTGC |
Predicted Fragment Size |
388 |
IR fragment full Seq |
0001 AGGTCTTTCC AAGGGTGGTA AGAAGGGCGG TAAGAAGAAG GTGGTGGACC CGTTTTCTCG
0061 CAAGGACTGG TACGATGTCA AAGCTCCGAA TATGTTTCAA ACCCGTCAAA TCGGTAAAAC
0121 ACTTGTAAAC CGCACCCAGG GTCAAAGAAT AGCATCGGAT TATTTGAAGG GTCGCGTTTT
0181 CGAAGTGTCT TTAGCAGACT TGCAAAAGGA TATTGATCCA GAACGTTCTT TTCGCAAGTT
0241 CCGTCTTATT GCAGAAGATG TTCAAGACCG TAATGTGCTC TGTAACTTTC ACGGAATGGA
0301 CTTGACTACG GACAAGTACA GGTCGATGGT TAAAAAGTGG CAAACACTAA TTGAAGCTAT
0361 TGTCGAAGCA AAGACTGTAG ATGGGTAC |
in silico PCR Fragment |
0001 AGGTCTTTCC AAGGGTGGTA AGAAGGGCGG TAAGAAGAAG GTGGTGGACC CGTTTTCTCG
0061 CAAGGACTGG TACGATGTCA AAGCTCCGAA TATGTTTCAA ACCCGTCAAA TCGGTAAAAC
0121 ACTTGTAAAC CGCACCCAGG GTCAAAGAAT AGCATCGGAT TATTTGAAGG GTCGCGTTTT
0181 CGAAGTGTCT TTAGCAGACT TGCAAAAGGA TATTGATCCA GAACGTTCTT TTCGCAAGTT
0241 CCGTCTTATT GCAGAAGATG TTCAAGACCG TAATGTGCTC TGTAACTTTC ACGGAATGGA
0301 CTTGACTACG GACAAGTACA GGTCGATGGT TAAAAAGTGG CAAACACTAA TTGAAGCTAT
0361 TGTCGAAGCA AAGACTGTAG ATGGGTAC |
Assemble Data |
2168R-2.IR_full 1 AGGTCTTTCCAAGGGTGGTAAGAAGGGCGGTAAGAAGAAGGTGGTGGACCCGTTTTCTCG 60
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2168R-2.in silico 1 AGGTCTTTCCAAGGGTGGTAAGAAGGGCGGTAAGAAGAAGGTGGTGGACCCGTTTTCTCG 60
2168R-2.IR_full 61 CAAGGACTGGTACGATGTCAAAGCTCCGAATATGTTTCAAACCCGTCAAATCGGTAAAAC 120
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2168R-2.in silico 61 CAAGGACTGGTACGATGTCAAAGCTCCGAATATGTTTCAAACCCGTCAAATCGGTAAAAC 120
2168R-2.IR_full 121 ACTTGTAAACCGCACCCAGGGTCAAAGAATAGCATCGGATTATTTGAAGGGTCGCGTTTT 180
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2168R-2.in silico 121 ACTTGTAAACCGCACCCAGGGTCAAAGAATAGCATCGGATTATTTGAAGGGTCGCGTTTT 180
2168R-2.IR_full 181 CGAAGTGTCTTTAGCAGACTTGCAAAAGGATATTGATCCAGAACGTTCTTTTCGCAAGTT 240
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2168R-2.in silico 181 CGAAGTGTCTTTAGCAGACTTGCAAAAGGATATTGATCCAGAACGTTCTTTTCGCAAGTT 240
2168R-2.IR_full 241 CCGTCTTATTGCAGAAGATGTTCAAGACCGTAATGTGCTCTGTAACTTTCACGGAATGGA 300
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2168R-2.in silico 241 CCGTCTTATTGCAGAAGATGTTCAAGACCGTAATGTGCTCTGTAACTTTCACGGAATGGA 300
2168R-2.IR_full 301 CTTGACTACGGACAAGTACAGGTCGATGGTTAAAAAGTGGCAAACACTAATTGAAGCTAT 360
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2168R-2.in silico 301 CTTGACTACGGACAAGTACAGGTCGATGGTTAAAAAGTGGCAAACACTAATTGAAGCTAT 360
2168R-2.IR_full 361 TGTCGAAGCAAAGACTGTAGATGGGTAC 388
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2168R-2.in silico 361 TGTCGAAGCAAAGACTGTAGATGGGTAC 388
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
300 |
0 |
0 |
0 |
NM_166715.2 |
CG2168-RD, transcript variant D (RpS3A), mRNA |
94.66 |
284 |
3 |
3 |
3 |
NM_079879.2 |
CG2168-RA, transcript variant A (RpS3A), mRNA |
84.66 |
254 |
2 |
3 |
3 |
NM_166714.2 |
CG2168-RB, transcript variant B (RpS3A), mRNA |
0 |
0 |
3 |
3 |
3 |
NM_132766.2 |
CG9053-RA, transcript variant A (CG9053), mRNA |
0 |
0 |
3 |
3 |
3 |
NM_167427.1 |
CG9053-RB, transcript variant B (CG9053), mRNA |
0 |
0 |
2 |
4 |
3 |
NM_168898.1 |
CG32436-RA (CG32436), mRNA |
0 |
0 |
2 |
4 |
2 |
NM_141392.2 |
CG10286-RA (CG10286), mRNA |
0 |
0 |
1 |
6 |
5 |
NM_169015.1 |
CG31531-RB, transcript variant B (CG31531), mRNA |
0 |
0 |
1 |
6 |
5 |
NM_176399.1 |
CG31531-RC, transcript variant C (CG31531), mRNA |
0 |
0 |
1 |
6 |
5 |
NM_169014.1 |
CG31531-RA, transcript variant A (CG31531), mRNA |
0 |
0 |
1 |
5 |
4 |
NM_057631.4 |
CG5786-RA (ppan), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_137510.2 |
CG30122-RB (CG30122), mRNA |
0 |
0 |
0 |
6 |
5 |
NM_132508.2 |
CG1703-RA (CG1703), mRNA |
0 |
0 |
0 |
4 |
11 |
NM_080358.2 |
CG1484-RA (fliI), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_168144.1 |
CG32409-RA (CG32409), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_141453.2 |
CG1234-RA (CG1234), mRNA |
0 |
0 |
0 |
4 |
2 |
NM_079251.2 |
CG6253-RA (RpL14), mRNA |
0 |
0 |
0 |
3 |
7 |
NM_140412.1 |
CG8833-RA (CG8833), mRNA |
0 |
0 |
0 |
3 |
3 |
NM_136158.2 |
CG10538-RA (CdGAPr), mRNA |
0 |
0 |
0 |
3 |
3 |
NM_175925.1 |
CG1651-RA, transcript variant A (Ank), mRNA |
0 |
0 |
0 |
3 |
3 |
NM_175926.1 |
CG1651-RB, transcript variant B (Ank), mRNA |
0 |
0 |
0 |
3 |
3 |
NM_175928.1 |
CG1651-RD, transcript variant D (Ank), mRNA |
0 |
0 |
0 |
3 |
3 |
NM_175927.1 |
CG1651-RC, transcript variant C (Ank), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_206647.1 |
CG2252-RC, transcript variant C (fs(1)h), mRNA |
0 |
0 |
0 |
3 |
2 |
NM_144243.1 |
CG13364-RA (CG13364), mRNA |
0 |
0 |
0 |
2 |
6 |
NM_139401.1 |
CG13933-RA (CG13933), mRNA |
0 |
0 |
0 |
2 |
5 |
NM_136557.2 |
CG8635-RA (CG8635), mRNA |
0 |
0 |
0 |
2 |
5 |
NM_001042868.1 |
CG34124-RA (CG34124), mRNA |
0 |
0 |
0 |
2 |
5 |
NM_170467.1 |
CG31025-RB, transcript variant B (CG31025), mRNA |
0 |
0 |
0 |
2 |
5 |
NM_170466.1 |
CG31025-RA, transcript variant A (CG31025), mRNA |
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