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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
2069R-1 |
Symbol |
Oseg4 |
Full Name |
Oseg4 |
CG No |
CG2069 |
Old CG No |
CG2069 |
Synonyms |
OSEG4, cytC40, CG2069, Oseg4, OSEG, Wdr35 |
Accession No (Link to NCBI) |
NM_139396.3 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Zhang Y, Teng D, Lu W, Liu M, Zeng H, Cao L, Southcott L, Potdar S, Westerman E, Zhu AJ, Zhang W. A widely diverged locus involved in locomotor adaptation in Heliconius butterflies. Sci Adv (2021) 7(32)
[
PubMed ID = 34348900
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgCCAGACCCTGGATGGGCACAA |
Primer Seq. 3' |
aatctagaggtaccCCAGAACTGGACGCTTTCGAC |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 CCAGACCCTG GATGGGCACA AGGAGTCGGT GCGGGTGGTC ACCTGGAACG ATGCGCAGCA
0061 GAAGCTGACC TCCTCGGACA CGGACGGTGT GATCATGGTG TGGATGCTGT ACAAGGGATC
0121 CTGGTACGAG GAGATGACCA ACGACAGAAA GAAGTCCACG GTGGCCAGCA TGAGCTGGAC
0181 GTCGGACGGA TCGCGGATCT GCATCGTCTA TGAGGATGGG GCGATTATAG TGGGCTCAGT
0241 GGATGGCAAC CGCATCTTTG GCAAGGAGCT GAAGGGCACC CATCTGACTG GCGTGCAGTG
0301 GAGTCCGGAC AATCGGCTAA TCCTCTTTGC GCTGGCCAAC GGGGAGTGTC ATCTGTACGA
0361 TAACCAAGGC AACTTTGCTA TGAAGCTGCA CATCCAGTGC GTGAACATAA GTGGCGGCTC
0421 CTCCTCCAGA GGTCACCGCA TAGCCAGCAT CTGCTGGTTC AGTGGCAGGG TCGTCCAGAG
0481 TCGAAAGCGT CCAGTTCTGG |
in silico PCR Fragment |
0001 CCAGACCCTG GATGGGCACA AGGAGTCGGT GCGGGTGGTC ACCTGGAACG ATGCGCAGCA
0061 GAAGCTGACC TCCTCGGACA CGGACGGTGT GATCATGGTG TGGATGCTGT ACAAGGGATC
0121 CTGGTACGAG GAGATGACCA ACGACAGAAA GAAGTCCACG GTGGCCAGCA TGAGCTGGAC
0181 GTCGGACGGA TCGCGGATCT GCATCGTCTA TGAGGATGGG GCGATTATAG TGGGCTCAGT
0241 GGATGGCAAC CGCATCTTTG GCAAGGAGCT GAAGGGCACC CATCTGACTG GCGTGCAGTG
0301 GAGTCCGGAC AATCGGCTAA TCCTCTTTGC GCTGGCCAAC GGGGAGTGTC ATCTGTACGA
0361 TAACCAAGGC AACTTTGCTA TGAAGCTGCA CATCCAGTGC GTGAACATAA GTGGCGGCTC
0421 CTCCTCCAGA GGTCACCGCA TAGCCAGCAT CTGCTGGTTC AGTGGCAGGG TCGTCCAGAG
0481 TCGAAAGCGT CCAGTTCTGG |
Assemble Data |
2069R-1.IR_full 1 CCAGACCCTGGATGGGCACAAGGAGTCGGTGCGGGTGGTCACCTGGAACGATGCGCAGCA 60
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2069R-1.in silico 1 CCAGACCCTGGATGGGCACAAGGAGTCGGTGCGGGTGGTCACCTGGAACGATGCGCAGCA 60
2069R-1.IR_full 61 GAAGCTGACCTCCTCGGACACGGACGGTGTGATCATGGTGTGGATGCTGTACAAGGGATC 120
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2069R-1.in silico 61 GAAGCTGACCTCCTCGGACACGGACGGTGTGATCATGGTGTGGATGCTGTACAAGGGATC 120
2069R-1.IR_full 121 CTGGTACGAGGAGATGACCAACGACAGAAAGAAGTCCACGGTGGCCAGCATGAGCTGGAC 180
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2069R-1.in silico 121 CTGGTACGAGGAGATGACCAACGACAGAAAGAAGTCCACGGTGGCCAGCATGAGCTGGAC 180
2069R-1.IR_full 181 GTCGGACGGATCGCGGATCTGCATCGTCTATGAGGATGGGGCGATTATAGTGGGCTCAGT 240
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2069R-1.in silico 181 GTCGGACGGATCGCGGATCTGCATCGTCTATGAGGATGGGGCGATTATAGTGGGCTCAGT 240
2069R-1.IR_full 241 GGATGGCAACCGCATCTTTGGCAAGGAGCTGAAGGGCACCCATCTGACTGGCGTGCAGTG 300
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2069R-1.in silico 241 GGATGGCAACCGCATCTTTGGCAAGGAGCTGAAGGGCACCCATCTGACTGGCGTGCAGTG 300
2069R-1.IR_full 301 GAGTCCGGACAATCGGCTAATCCTCTTTGCGCTGGCCAACGGGGAGTGTCATCTGTACGA 360
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2069R-1.in silico 301 GAGTCCGGACAATCGGCTAATCCTCTTTGCGCTGGCCAACGGGGAGTGTCATCTGTACGA 360
2069R-1.IR_full 361 TAACCAAGGCAACTTTGCTATGAAGCTGCACATCCAGTGCGTGAACATAAGTGGCGGCTC 420
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2069R-1.in silico 361 TAACCAAGGCAACTTTGCTATGAAGCTGCACATCCAGTGCGTGAACATAAGTGGCGGCTC 420
2069R-1.IR_full 421 CTCCTCCAGAGGTCACCGCATAGCCAGCATCTGCTGGTTCAGTGGCAGGGTCGTCCAGAG 480
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2069R-1.in silico 421 CTCCTCCAGAGGTCACCGCATAGCCAGCATCTGCTGGTTCAGTGGCAGGGTCGTCCAGAG 480
2069R-1.IR_full 481 TCGAAAGCGTCCAGTTCTGG 500
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2069R-1.in silico 481 TCGAAAGCGTCCAGTTCTGG 500
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
3 |
NM_139396.3 |
CG2069-RA (Oseg4), mRNA |
0 |
0 |
3 |
3 |
2 |
NM_141569.3 |
CG8202-RA (CG8202), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_080317.2 |
CG2647-RA (per), mRNA |
0 |
0 |
2 |
4 |
4 |
NM_135153.2 |
CG9226-RA (CG9226), mRNA |
0 |
0 |
1 |
6 |
3 |
NM_001014757.2 |
CG33517-RD, transcript variant D (D2R), mRNA |
0 |
0 |
1 |
6 |
3 |
NM_001031909.1 |
CG33517-RE, transcript variant E (D2R), mRNA |
0 |
0 |
1 |
6 |
2 |
NM_001014758.2 |
CG33517-RC, transcript variant C (D2R), mRNA |
0 |
0 |
1 |
6 |
2 |
NM_001014760.2 |
CG33517-RA, transcript variant A (D2R), mRNA |
0 |
0 |
1 |
6 |
2 |
NM_001014759.1 |
CG33517-RB, transcript variant B (D2R), mRNA |
0 |
0 |
1 |
5 |
5 |
NM_140058.2 |
CG3529-RB (CG3529), mRNA |
0 |
0 |
1 |
5 |
4 |
NM_141691.1 |
CG8500-RA (CG8500), mRNA |
0 |
0 |
1 |
4 |
5 |
NM_132532.2 |
CG15739-RA (CG15739), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_078981.2 |
CG8967-RA (otk), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_141353.1 |
CG15580-RA, transcript variant A (CG15580), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_140104.2 |
CG6736-RA (Ilp4), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_078547.2 |
CG2979-RA (Yp2), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_139889.1 |
CG7492-RA (CG7492), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_169676.1 |
CG31150-RA (CG31150), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_140842.1 |
CG9629-RA (CG9629), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_134824.2 |
CG16995-RA (CG16995), mRNA |
0 |
0 |
0 |
6 |
3 |
NM_078704.2 |
CG17051-RA (dod), mRNA |
0 |
0 |
0 |
5 |
8 |
NM_132831.1 |
CG8184-RB (CG8184), mRNA |
0 |
0 |
0 |
5 |
7 |
NM_137100.2 |
CG8503-RA (CG8503), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_078601.2 |
CG9533-RA (rut), mRNA |
0 |
0 |
0 |
5 |
4 |
NM_078696.2 |
CG1467-RA (Syx16), mRNA |
0 |
0 |
0 |
5 |
3 |
NM_141535.2 |
CG9601-RA (CG9601), mRNA |
0 |
0 |
0 |
4 |
9 |
NM_168647.1 |
CG32156-RA, transcript variant A (Mbs), mRNA |
0 |
0 |
0 |
4 |
9 |
NM_168648.1 |
CG32156-RB, transcript variant B (Mbs), mRNA |
0 |
0 |
0 |
4 |
9 |
NM_168646.1 |
CG32156-RC, transcript variant C (Mbs), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_079838.2 |
CG5099-RA, transcript variant A (msi), mRNA |
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