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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 2069R-1 
 Symbol Oseg4  Full Name Oseg4 
 CG No CG2069  Old CG No CG2069 
 Synonyms OSEG4, cytC40, CG2069, Oseg4, OSEG, Wdr35 
 Accession No (Link to NCBI) NM_139396.3 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Zhang Y, Teng D, Lu W, Liu M, Zeng H, Cao L, Southcott L, Potdar S, Westerman E, Zhu AJ, Zhang W.
A widely diverged locus involved in locomotor adaptation in Heliconius butterflies.
Sci Adv (2021) 7(32) [ PubMed ID = 34348900 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCAGACCCTGGATGGGCACAA 
 Primer Seq. 3'
aatctagaggtaccCCAGAACTGGACGCTTTCGAC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CCAGACCCTG GATGGGCACA AGGAGTCGGT GCGGGTGGTC ACCTGGAACG ATGCGCAGCA 
0061 GAAGCTGACC TCCTCGGACA CGGACGGTGT GATCATGGTG TGGATGCTGT ACAAGGGATC 
0121 CTGGTACGAG GAGATGACCA ACGACAGAAA GAAGTCCACG GTGGCCAGCA TGAGCTGGAC 
0181 GTCGGACGGA TCGCGGATCT GCATCGTCTA TGAGGATGGG GCGATTATAG TGGGCTCAGT 
0241 GGATGGCAAC CGCATCTTTG GCAAGGAGCT GAAGGGCACC CATCTGACTG GCGTGCAGTG 
0301 GAGTCCGGAC AATCGGCTAA TCCTCTTTGC GCTGGCCAAC GGGGAGTGTC ATCTGTACGA 
0361 TAACCAAGGC AACTTTGCTA TGAAGCTGCA CATCCAGTGC GTGAACATAA GTGGCGGCTC 
0421 CTCCTCCAGA GGTCACCGCA TAGCCAGCAT CTGCTGGTTC AGTGGCAGGG TCGTCCAGAG 
0481 TCGAAAGCGT CCAGTTCTGG  
 in silico PCR Fragment
0001 CCAGACCCTG GATGGGCACA AGGAGTCGGT GCGGGTGGTC ACCTGGAACG ATGCGCAGCA 
0061 GAAGCTGACC TCCTCGGACA CGGACGGTGT GATCATGGTG TGGATGCTGT ACAAGGGATC 
0121 CTGGTACGAG GAGATGACCA ACGACAGAAA GAAGTCCACG GTGGCCAGCA TGAGCTGGAC 
0181 GTCGGACGGA TCGCGGATCT GCATCGTCTA TGAGGATGGG GCGATTATAG TGGGCTCAGT 
0241 GGATGGCAAC CGCATCTTTG GCAAGGAGCT GAAGGGCACC CATCTGACTG GCGTGCAGTG 
0301 GAGTCCGGAC AATCGGCTAA TCCTCTTTGC GCTGGCCAAC GGGGAGTGTC ATCTGTACGA 
0361 TAACCAAGGC AACTTTGCTA TGAAGCTGCA CATCCAGTGC GTGAACATAA GTGGCGGCTC 
0421 CTCCTCCAGA GGTCACCGCA TAGCCAGCAT CTGCTGGTTC AGTGGCAGGG TCGTCCAGAG 
0481 TCGAAAGCGT CCAGTTCTGG  
 Assemble Data

2069R-1.IR_full       1   CCAGACCCTGGATGGGCACAAGGAGTCGGTGCGGGTGGTCACCTGGAACGATGCGCAGCA 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2069R-1.in silico     1   CCAGACCCTGGATGGGCACAAGGAGTCGGTGCGGGTGGTCACCTGGAACGATGCGCAGCA 60


2069R-1.IR_full       61  GAAGCTGACCTCCTCGGACACGGACGGTGTGATCATGGTGTGGATGCTGTACAAGGGATC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2069R-1.in silico     61  GAAGCTGACCTCCTCGGACACGGACGGTGTGATCATGGTGTGGATGCTGTACAAGGGATC 120


2069R-1.IR_full       121 CTGGTACGAGGAGATGACCAACGACAGAAAGAAGTCCACGGTGGCCAGCATGAGCTGGAC 180
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2069R-1.in silico     121 CTGGTACGAGGAGATGACCAACGACAGAAAGAAGTCCACGGTGGCCAGCATGAGCTGGAC 180


2069R-1.IR_full       181 GTCGGACGGATCGCGGATCTGCATCGTCTATGAGGATGGGGCGATTATAGTGGGCTCAGT 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2069R-1.in silico     181 GTCGGACGGATCGCGGATCTGCATCGTCTATGAGGATGGGGCGATTATAGTGGGCTCAGT 240


2069R-1.IR_full       241 GGATGGCAACCGCATCTTTGGCAAGGAGCTGAAGGGCACCCATCTGACTGGCGTGCAGTG 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2069R-1.in silico     241 GGATGGCAACCGCATCTTTGGCAAGGAGCTGAAGGGCACCCATCTGACTGGCGTGCAGTG 300


2069R-1.IR_full       301 GAGTCCGGACAATCGGCTAATCCTCTTTGCGCTGGCCAACGGGGAGTGTCATCTGTACGA 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2069R-1.in silico     301 GAGTCCGGACAATCGGCTAATCCTCTTTGCGCTGGCCAACGGGGAGTGTCATCTGTACGA 360


2069R-1.IR_full       361 TAACCAAGGCAACTTTGCTATGAAGCTGCACATCCAGTGCGTGAACATAAGTGGCGGCTC 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2069R-1.in silico     361 TAACCAAGGCAACTTTGCTATGAAGCTGCACATCCAGTGCGTGAACATAAGTGGCGGCTC 420


2069R-1.IR_full       421 CTCCTCCAGAGGTCACCGCATAGCCAGCATCTGCTGGTTCAGTGGCAGGGTCGTCCAGAG 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
2069R-1.in silico     421 CTCCTCCAGAGGTCACCGCATAGCCAGCATCTGCTGGTTCAGTGGCAGGGTCGTCCAGAG 480


2069R-1.IR_full       481 TCGAAAGCGTCCAGTTCTGG 500
                          ||||||||||||||||||||
2069R-1.in silico     481 TCGAAAGCGTCCAGTTCTGG 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_139396.3  CG2069-RA (Oseg4), mRNA 
0   NM_141569.3  CG8202-RA (CG8202), mRNA 
0   NM_080317.2  CG2647-RA (per), mRNA 
0   NM_135153.2  CG9226-RA (CG9226), mRNA 
0   NM_001014757.2  CG33517-RD, transcript variant D (D2R), mRNA 
0   NM_001031909.1  CG33517-RE, transcript variant E (D2R), mRNA 
0   NM_001014758.2  CG33517-RC, transcript variant C (D2R), mRNA 
0   NM_001014760.2  CG33517-RA, transcript variant A (D2R), mRNA 
0   NM_001014759.1  CG33517-RB, transcript variant B (D2R), mRNA 
0   NM_140058.2  CG3529-RB (CG3529), mRNA 
0   NM_141691.1  CG8500-RA (CG8500), mRNA 
0   NM_132532.2  CG15739-RA (CG15739), mRNA 
0   NM_078981.2  CG8967-RA (otk), mRNA 
0   NM_141353.1  CG15580-RA, transcript variant A (CG15580), mRNA 
0   NM_140104.2  CG6736-RA (Ilp4), mRNA 
0   NM_078547.2  CG2979-RA (Yp2), mRNA 
0   NM_139889.1  CG7492-RA (CG7492), mRNA 
0   NM_169676.1  CG31150-RA (CG31150), mRNA 
0   NM_140842.1  CG9629-RA (CG9629), mRNA 
0   NM_134824.2  CG16995-RA (CG16995), mRNA 
0   NM_078704.2  CG17051-RA (dod), mRNA 
0   NM_132831.1  CG8184-RB (CG8184), mRNA 
0   NM_137100.2  CG8503-RA (CG8503), mRNA 
0   NM_078601.2  CG9533-RA (rut), mRNA 
0   NM_078696.2  CG1467-RA (Syx16), mRNA 
0   NM_141535.2  CG9601-RA (CG9601), mRNA 
0   NM_168647.1  CG32156-RA, transcript variant A (Mbs), mRNA 
0   NM_168648.1  CG32156-RB, transcript variant B (Mbs), mRNA 
0   NM_168646.1  CG32156-RC, transcript variant C (Mbs), mRNA 
0   NM_079838.2  CG5099-RA, transcript variant A (msi), mRNA 

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