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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 1885R-1 
 Symbol CG1885  Full Name CG1885 
 CG No CG1885  Old CG No CG1885 
 Synonyms CG1885 
 Accession No (Link to NCBI) NM_132279.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATGACGAGTCGCCAGCGAACT 
 Primer Seq. 3'
aatctagaggtaccTCGTACACTTCGCACGCATCC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ATGACGAGTC GCCAGCGAAC TGTGATCATA TTCAAATCGG AATCGGAAAG CAGCGATGTG 
0061 TACGCAGAAA CGCTGGAGAA GCACGATTTC AATCCCGTCT TTGTGCCCAC GCTGAGTTTC 
0121 GGCTTCAAGA ATCTCGANTG AGCTGCNGCN CCAAGCTTCA GAATCCGGAT AAATATGCCG 
0181 GCATCATATT CACACTCGCC GCGCTGCGTG GANGGCCGTG GCTGAATCCC TCAATCTCGG 
0241 CGAGCTACCC GGCGGTTGGA AGATGTTGCA TAACTATGCC GTCGGCGAGG TGACCCACAA 
0301 TCTGGCGCTA AGCACCTTGG ACCAGCTATT CACCCACGGC AAACAGACGG GCAATGCCCG 
0361 GGCATTGGGC GACTATATAG TGGATACGTT CGATGGATCG CGTGCATTGC CGCTACTATT 
0421 GCCATGCGGT AATCTGGCCA CCGATACGCT GCTATCCAAG CTGGCCGAGA ATGGCTTCTC 
0481 CGTGGATGCG TGCGAAGTGT ACGA 
 in silico PCR Fragment
0001 ATGACGAGTC GCCAGCGAAC TGTGATCATA TTCAAATCGG AATCGGAAAG CAGCGATGTG 
0061 TACGCAGAAA CGCTGGAGAA GCACGATTTC AATCCCGTCT TTGTGCCCAC GCTGAGTTTC 
0121 GGCTTCAAGA ATCTCGA-TG AGCTGC-GCG CCAAGCTTCA GAATCCGGAT AAATATGCCG 
0181 GCATCATATT CACA-TCGCC GCGCTGCGTG GA-GGCCGTG GCTGAATCCC TCAATCTCGG 
0241 CGAGCTACCC GGCGGTTGGA AGATGTTGCA TAACTATGCC GTCGGCGAGG TGACCCACAA 
0301 TCTGGCGCTA AGCACCTTGG ACCAGCTATT CACCCACGGC AAACAGACGG GCAATGCCCG 
0361 GGCATTGGGC GACTATATAG TGGATACGTT CGATGGATCG CGTGCATTGC CGCTACTATT 
0421 GCCATGCGGT AATCTGGCCA CCGATACGCT GCTATCCAAG CTGGCCGAGA ATGGCTTCTC 
0481 CGTGGATGCG TGCGAAGTGT ACGA 
 Assemble Data

1885R-1.IR_full       1   ATGACGAGTCGCCAGCGAACTGTGATCATATTCAAATCGGAATCGGAAAGCAGCGATGTG 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1885R-1.in silico     1   ATGACGAGTCGCCAGCGAACTGTGATCATATTCAAATCGGAATCGGAAAGCAGCGATGTG 60


1885R-1.IR_full       61  TACGCAGAAACGCTGGAGAAGCACGATTTCAATCCCGTCTTTGTGCCCACGCTGAGTTTC 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1885R-1.in silico     61  TACGCAGAAACGCTGGAGAAGCACGATTTCAATCCCGTCTTTGTGCCCACGCTGAGTTTC 120


1885R-1.IR_full       121 GGCTTCAAGAATCTCGANTGAGCTGCNGCNCCAAGCTTCAGAATCCGGATAAATATGCCG 180
                          ||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
1885R-1.in silico     121 GGCTTCAAGAATCTCGA-TGAGCTGC-GCGCCAAGCTTCAGAATCCGGATAAATATGCCG 180


1885R-1.IR_full       181 GCATCATATTCACACTCGCCGCGCTGCGTGGANGGCCGTGGCTGAATCCCTCAATCTCGG 240
                          |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
1885R-1.in silico     181 GCATCATATTCACA-TCGCCGCGCTGCGTGGA-GGCCGTGGCTGAATCCCTCAATCTCGG 240


1885R-1.IR_full       241 CGAGCTACCCGGCGGTTGGAAGATGTTGCATAACTATGCCGTCGGCGAGGTGACCCACAA 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1885R-1.in silico     241 CGAGCTACCCGGCGGTTGGAAGATGTTGCATAACTATGCCGTCGGCGAGGTGACCCACAA 300


1885R-1.IR_full       301 TCTGGCGCTAAGCACCTTGGACCAGCTATTCACCCACGGCAAACAGACGGGCAATGCCCG 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1885R-1.in silico     301 TCTGGCGCTAAGCACCTTGGACCAGCTATTCACCCACGGCAAACAGACGGGCAATGCCCG 360


1885R-1.IR_full       361 GGCATTGGGCGACTATATAGTGGATACGTTCGATGGATCGCGTGCATTGCCGCTACTATT 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1885R-1.in silico     361 GGCATTGGGCGACTATATAGTGGATACGTTCGATGGATCGCGTGCATTGCCGCTACTATT 420


1885R-1.IR_full       421 GCCATGCGGTAATCTGGCCACCGATACGCTGCTATCCAAGCTGGCCGAGAATGGCTTCTC 480
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1885R-1.in silico     421 GCCATGCGGTAATCTGGCCACCGATACGCTGCTATCCAAGCTGGCCGAGAATGGCTTCTC 480


1885R-1.IR_full       481 CGTGGATGCGTGCGAAGTGTACGA 504
                          ||||||||||||||||||||||||
1885R-1.in silico     481 CGTGGATGCGTGCGAAGTGTACGA 504

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_132279.2  CG1885-RA (CG1885), mRNA 
0.41   NM_166415.1  CG3216-RB, transcript variant B (CG3216), mRNA 
0.41   NM_137688.1  CG3216-RA, transcript variant A (CG3216), mRNA 
0   NM_142232.1  CG9589-RA (CG9589), mRNA 
0   NM_168482.1  CG32095-RA (CG32095), mRNA 
0   NM_168948.3  CG12673-RA (olf413), mRNA 
0   NM_130518.2  CG3703-RA (CG3703), mRNA 
0   NM_132380.1  CG15311-RA (CG15311), mRNA 
0   NM_135228.1  CG11321-RA, transcript variant A (CG11321), mRNA 
0   NM_164709.1  CG11321-RB, transcript variant B (CG11321), mRNA 
0   NM_170360.1  CG4976-RA (Mes-4), mRNA 
0   NM_164382.1  CG3935-RA (al), mRNA 
0   NM_001014496.1  CG1506-RC, transcript variant C (Ac3), mRNA 
0   NM_165389.1  CG1506-RB, transcript variant B (Ac3), mRNA 
0   NM_136272.2  CG1506-RA, transcript variant A (Ac3), mRNA 
0   NM_142285.1  CG12753-RA, transcript variant A (CG12753), mRNA 
0   NM_001038969.1  CG12753-RB, transcript variant B (CG12753), mRNA 
0   NM_206301.1  CG7986-RC, transcript variant C (Atg18), mRNA 
0   NM_139927.2  CG7986-RA, transcript variant A (Atg18), mRNA 
0   NM_168259.1  CG7986-RB, transcript variant B (Atg18), mRNA 
0   NM_136453.1  CG2105-RA, transcript variant A (Corin), mRNA 
0   NM_206051.1  CG2105-RB, transcript variant B (Corin), mRNA 
0   NM_141559.3  CG8112-RA (CG8112), mRNA 
0   NM_001014630.1  CG33547-RA (Rim), mRNA 
0   NM_001038769.1  CG14617-RC, transcript variant C (CG14617), mRNA 
0   NM_166411.1  CG8994-RB, transcript variant B (exu), mRNA 
0   NM_166410.1  CG8994-RA, transcript variant A (exu), mRNA 
0   NM_166412.1  CG8994-RC, transcript variant C (exu), mRNA 
0   NM_176775.1  CG14617-RA, transcript variant A (CG14617), mRNA 
0   NM_001038770.1  CG14617-RE, transcript variant E (CG14617), mRNA 

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