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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 18446R-3 
 Symbol CG18446  Full Name CG18446 
 CG No CG18446  Old CG No CG18446 
 Synonyms CG18446 
 Accession No (Link to NCBI) NM_136685.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCGCAAAGATGTACCCGCAAAT 
 Primer Seq. 3'
aatctagaggtaccACATGGGTGGTATCTGAATCG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CGCAAAGATG TACCCGCAAA TTCCATCCGC CATACCCTCC CCACCATTTT CACCCACTGA 
0061 TCCTACGGAT ATGCCGCTGG TCAAGGAGAT TCTGGCTCGC AGTGAACATA TAAATGTTCC 
0121 CGAAGGAACC GTGCTCTGTG TTCCGTGCTA CCTGTGCAAA CAGCCCTTCA ATGATATTGA 
0181 ATCCTTCAAG GAGCACCTCA CCCAACATGC GGCGGAAATT AACGCCTGGA ATAACACGCG 
0241 TGCGCAGGAG CAGACACCTC CGCCGACGAT AACACCCTTT GTTCAGTCCA TGAATAAACC 
0301 ATTCGTGCAT CCCACAGATC AGCACTTATT TCATTCCATT GATCATGGTG ACATGGATCA 
0361 CCATCACAAT GCCCACTACC GCAATCGGAT GGAGTTTGGC TGTCCGCCAC CCATGGATTT 
0421 TTACTCACCG CCGCTCGAAC CAGAAATTCC ATTTCAAATG CCTGCGGTTC ATCAACATCC 
0481 GATTCAGATA NCACCCATGT  
 in silico PCR Fragment
0001 CGCAAAGATG TACCCGCAAA TTCCATCCGC CATACCCTCC CCACCATTTT CACCCACTGA 
0061 TCCTACGGAT ATGCCGCTGG TCAAGGAGAT TCTGGCTCGC AGTGAACATA TAAATGTTCC 
0121 CGAAGGAACC GTGCTCTGTG TTCCGTGCTA CCTGTGCAAA CAGCCCTTCA ATGATATTGA 
0181 ATCCTTCAAG GAGCACCTCA CCCAACATGC GGCGGAAATT AACGCCTGGA ATAACACGCG 
0241 TGCGCAGGAG CAGACACCTC CGCCGACGAT AACACCCTTT GTTCAGTCCA TGAATAAACC 
0301 ATTCGTGCAT CCCACAGATC AGCACTTATT TCATTCCATT GATCATGGTG ACATGGATCA 
0361 CCATCACAAT GCCCACTACC GCAATCGGAT GGAGTTTGGC TGTCCGCCAC CCATGGATTT 
0421 TTACTCACCG CCGCTCGAAC CAGAAATTCC ATTTCAAATG CCTGCGGTTC ATCAACATCC 
0481 GATTCAGATA CCACCCATGT  
 Assemble Data

18446R-3.IR_full       1   CGCAAAGATGTACCCGCAAATTCCATCCGCCATACCCTCCCCACCATTTTCACCCACTGA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18446R-3.in silico     1   CGCAAAGATGTACCCGCAAATTCCATCCGCCATACCCTCCCCACCATTTTCACCCACTGA 60


18446R-3.IR_full       61  TCCTACGGATATGCCGCTGGTCAAGGAGATTCTGGCTCGCAGTGAACATATAAATGTTCC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18446R-3.in silico     61  TCCTACGGATATGCCGCTGGTCAAGGAGATTCTGGCTCGCAGTGAACATATAAATGTTCC 120


18446R-3.IR_full       121 CGAAGGAACCGTGCTCTGTGTTCCGTGCTACCTGTGCAAACAGCCCTTCAATGATATTGA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18446R-3.in silico     121 CGAAGGAACCGTGCTCTGTGTTCCGTGCTACCTGTGCAAACAGCCCTTCAATGATATTGA 180


18446R-3.IR_full       181 ATCCTTCAAGGAGCACCTCACCCAACATGCGGCGGAAATTAACGCCTGGAATAACACGCG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18446R-3.in silico     181 ATCCTTCAAGGAGCACCTCACCCAACATGCGGCGGAAATTAACGCCTGGAATAACACGCG 240


18446R-3.IR_full       241 TGCGCAGGAGCAGACACCTCCGCCGACGATAACACCCTTTGTTCAGTCCATGAATAAACC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18446R-3.in silico     241 TGCGCAGGAGCAGACACCTCCGCCGACGATAACACCCTTTGTTCAGTCCATGAATAAACC 300


18446R-3.IR_full       301 ATTCGTGCATCCCACAGATCAGCACTTATTTCATTCCATTGATCATGGTGACATGGATCA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18446R-3.in silico     301 ATTCGTGCATCCCACAGATCAGCACTTATTTCATTCCATTGATCATGGTGACATGGATCA 360


18446R-3.IR_full       361 CCATCACAATGCCCACTACCGCAATCGGATGGAGTTTGGCTGTCCGCCACCCATGGATTT 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18446R-3.in silico     361 CCATCACAATGCCCACTACCGCAATCGGATGGAGTTTGGCTGTCCGCCACCCATGGATTT 420


18446R-3.IR_full       421 TTACTCACCGCCGCTCGAACCAGAAATTCCATTTCAAATGCCTGCGGTTCATCAACATCC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18446R-3.in silico     421 TTACTCACCGCCGCTCGAACCAGAAATTCCATTTCAAATGCCTGCGGTTCATCAACATCC 480


18446R-3.IR_full       481 GATTCAGATANCACCCATGT 500
                           |||||||||| |||||||||
18446R-3.in silico     481 GATTCAGATACCACCCATGT 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_136685.2  CG18446-RA (CG18446), mRNA 
0   NM_001038739.1  CG9900-RC, transcript variant C (mit(1)15), mRNA 
0   NM_080162.3  CG9900-RB, transcript variant B (mit(1)15), mRNA 
0   NM_206242.1  CG32306-RD, transcript variant D (CG32306), mRNA 
0   NM_167948.1  CG32306-RA, transcript variant A (CG32306), mRNA 
0   NM_139464.2  CG32306-RB, transcript variant B (CG32306), mRNA 
0   NM_206163.1  CG5170-RB, transcript variant B (Dp1), mRNA 
0   NM_079057.2  CG5170-RC, transcript variant C (Dp1), mRNA 
0   NM_206164.1  CG5170-RA, transcript variant A (Dp1), mRNA 
0   NM_166280.1  CG5170-RD, transcript variant D (Dp1), mRNA 
0   NM_166281.1  CG5170-RE, transcript variant E (Dp1), mRNA 
0   NM_166282.1  CG5170-RF, transcript variant F (Dp1), mRNA 
0   NM_206363.2  CG17839-RB, transcript variant B (CG17839), mRNA 
0   NM_001043141.1  CG17839-RC, transcript variant C (CG17839), mRNA 
0   NM_132317.1  CG12121-RA (CG12121), mRNA 
0   NM_137468.1  CG18536-RA (CG18536), mRNA 
0   NM_134927.1  CG15412-RA (CG15412), mRNA 
0   NM_138147.2  CG2736-RA (CG2736), mRNA 
0   NM_130578.2  CG32809-RD, transcript variant D (CG32809), mRNA 
0   NM_001043301.1  CG11958-RC, transcript variant C (Cnx99A), mRNA 
0   NM_057809.4  CG11958-RB, transcript variant B (Cnx99A), mRNA 
0   NM_001043302.1  CG11958-RD, transcript variant D (Cnx99A), mRNA 
0   NM_135235.2  CG10805-RA (CG10805), mRNA 
0   NM_170407.2  CG11958-RA, transcript variant A (Cnx99A), mRNA 
0   NM_137273.2  CG8060-RA (CG8060), mRNA 
0   NM_139852.2  CG8591-RA (CTCF), mRNA 
0   NM_206533.1  CG5911-RB, transcript variant B (ETHR), mRNA 
0   NM_142703.2  CG5911-RA, transcript variant A (ETHR), mRNA 
0   NM_132443.1  CG16922-RA (CG16922), mRNA 
0   27  NM_164808.2  CG31901-RA (CG31901), mRNA 

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