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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 18444R-1 
 Symbol alphaTry  Full Name alphaTrypsin 
 CG No CG18444  Old CG No CG18444 
 Synonyms SP102, Try, DmAlphaTry, alpha, alphaTry, CG18444 
 Accession No (Link to NCBI) NM_057423.3 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGATCGTGATCCTCTTGTCCGC 
 Primer Seq. 3'
aatctagaggtaccAGAGGCTCCGTTAGCTGGGTT 
 Predicted Fragment Size
433 
 IR fragment full Seq
0001 GATCGTGATC CTCTTGTCCG CCGTGGTCTG CGCCCTGGGA GGCACCGTCC CTGAGGGACT 
0061 CCTGCCTCAG TTGGATGGCC GCATTGTCGG CGGCTCTGCT ACCACCATCA GCAGCTTCCC 
0121 CTGGCAGATC TCCCTGCAGC GCAGTGGCAG CCACTCCTGC GGTGGATCCA TCTACTCTGC 
0181 CAACATCATT GTGACCGCCG CTCACTGTCT GCAGTCCGTG TCCGCTTCAG TCCTGCAGGT 
0241 CCGTGCTGGA TCCACCTACT GGAGCTCTGG TGGCGTCGTC GCCAAGGTTT CCTCTTTCAA 
0301 GAACCACGAG GGATACAACG CTAACACCAT GGTCAACGAC ATCGCTGTCA TCCGTCTGAG 
0361 CTCTTCCCTG AGCTTCAGCT CAAGCATCAA GGCTATTAGC CTGGCCACTT ACAACCCAGC 
0421 TAACGGAGCC TCT 
 in silico PCR Fragment
0001 GATCGTGATC CTCTTGTCCG CCGTGGTCTG CGCCCTGGGA GGCACCGTCC CTGAGGGACT 
0061 CCTGCCTCAG TTGGATGGCC GCATTGTCGG CGGCTCTGCT ACCACCATCA GCAGCTTCCC 
0121 CTGGCAGATC TCCCTGCAGC GCAGTGGCAG CCACTCCTGC GGTGGATCCA TCTACTCTGC 
0181 CAACATCATT GTGACCGCCG CTCACTGTCT GCAGTCCGTG TCCGCTTCAG TCCTGCAGGT 
0241 CCGTGCTGGA TCCACCTACT GGAGCTCTGG TGGCGTCGTC GCCAAGGTTT CCTCTTTCAA 
0301 GAACCACGAG GGATACAACG CTAACACCAT GGTCAACGAC ATCGCTGTCA TCCGTCTGAG 
0361 CTCTTCCCTG AGCTTCAGCT CAAGCATCAA GGCTATTAGC CTGGCCACTT ACAACCCAGC 
0421 TAACGGAGCC TCT 
 Assemble Data

18444R-1.IR_full       1   GATCGTGATCCTCTTGTCCGCCGTGGTCTGCGCCCTGGGAGGCACCGTCCCTGAGGGACT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18444R-1.in silico     1   GATCGTGATCCTCTTGTCCGCCGTGGTCTGCGCCCTGGGAGGCACCGTCCCTGAGGGACT 60


18444R-1.IR_full       61  CCTGCCTCAGTTGGATGGCCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18444R-1.in silico     61  CCTGCCTCAGTTGGATGGCCGCATTGTCGGCGGCTCTGCTACCACCATCAGCAGCTTCCC 120


18444R-1.IR_full       121 CTGGCAGATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACTCTGC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18444R-1.in silico     121 CTGGCAGATCTCCCTGCAGCGCAGTGGCAGCCACTCCTGCGGTGGATCCATCTACTCTGC 180


18444R-1.IR_full       181 CAACATCATTGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCTTCAGTCCTGCAGGT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18444R-1.in silico     181 CAACATCATTGTGACCGCCGCTCACTGTCTGCAGTCCGTGTCCGCTTCAGTCCTGCAGGT 240


18444R-1.IR_full       241 CCGTGCTGGATCCACCTACTGGAGCTCTGGTGGCGTCGTCGCCAAGGTTTCCTCTTTCAA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18444R-1.in silico     241 CCGTGCTGGATCCACCTACTGGAGCTCTGGTGGCGTCGTCGCCAAGGTTTCCTCTTTCAA 300


18444R-1.IR_full       301 GAACCACGAGGGATACAACGCTAACACCATGGTCAACGACATCGCTGTCATCCGTCTGAG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18444R-1.in silico     301 GAACCACGAGGGATACAACGCTAACACCATGGTCAACGACATCGCTGTCATCCGTCTGAG 360


18444R-1.IR_full       361 CTCTTCCCTGAGCTTCAGCTCAAGCATCAAGGCTATTAGCCTGGCCACTTACAACCCAGC 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18444R-1.in silico     361 CTCTTCCCTGAGCTTCAGCTCAAGCATCAAGGCTATTAGCCTGGCCACTTACAACCCAGC 420


18444R-1.IR_full       421 TAACGGAGCCTCT 433
                           |||||||||||||
18444R-1.in silico     421 TAACGGAGCCTCT 433

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   415  NM_057423.3  CG18444-RA (alphaTry), mRNA 
32.53   135  79  42  36  NM_165823.1  CG30028-RA (gammaTry), mRNA 
32.53   135  79  42  36  NM_165825.1  CG30025-RA (CG30025), mRNA 
32.53   135  79  42  36  NM_165824.1  CG30031-RA (CG30031), mRNA 
32.53   135  79  42  36  NM_078970.3  CG12351-RA (deltaTry), mRNA 
28.91   120  71  75  50  NM_080165.1  CG18211-RA (betaTry), mRNA 
1.2   NM_166398.1  CG18065-RA, transcript variant A (CG18065), mRNA 
1.2   NM_001032270.1  CG13430-RB, transcript variant B (CG13430), mRNA 
1.2   NM_001032271.1  CG13430-RA, transcript variant A (CG13430), mRNA 
0.72   16  17  34  NM_080373.2  CG18681-RA (epsilonTry), mRNA 
0.48   NM_140083.1  CG18179-RA (CG18179), mRNA 
0   NM_140031.1  CG4821-RA, transcript variant A (Tequila), mRNA 
0   NM_168314.1  CG4821-RD, transcript variant D (Tequila), mRNA 
0   NM_168316.1  CG4821-RB, transcript variant B (Tequila), mRNA 
0   22  NM_137030.1  CG4812-RA (Ser8), mRNA 
0   NM_134673.2  CG11912-RA (CG11912), mRNA 
0   NM_141908.1  CG17404-RA (CG17404), mRNA 
0   NM_136119.1  CG16771-RA (CG16771), mRNA 
0   NM_169915.1  CG31205-RA (CG31205), mRNA 
0   NM_143104.1  CG11856-RA (Nup358), mRNA 
0   10  NM_137964.1  CG5372-RA (alphaPS5), mRNA 
0   NM_137491.2  CG5190-RA (CG5190), mRNA 
0   NM_168962.1  CG32451-RC, transcript variant C (SPoCk), mRNA 
0   NM_168963.1  CG32451-RA, transcript variant A (SPoCk), mRNA 
0   NM_168961.2  CG32451-RB, transcript variant B (SPoCk), mRNA 
0   NM_136592.1  CG11824-RA (CG11824), mRNA 
0   NM_169052.1  CG2666-RB, transcript variant B (kkv), mRNA 
0   NM_079509.1  CG2666-RA, transcript variant A (kkv), mRNA 
0   NM_206430.1  CG2666-RC, transcript variant C (kkv), mRNA 
0   NM_137885.2  CG3682-RA, transcript variant A (PIP5K59B), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
DC
++ 
DM
VM
 
VB
 
Caspase-3 signal
N
DB
++ 
DC
++ 
DM
VM
 
VB
 
Dcompartment   Penetrance
     

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