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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 18345R-2 
 Symbol trpl  Full Name trp-like 
 CG No CG18345  Old CG No CG18345 
 Synonyms TRPL, dTRPL, DmTRPL, dTrpL, TrpL, trp-l, CG1694, CG18345, trpl 
 Accession No (Link to NCBI) NM_057547.3 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgAAGTTCCTGCTGGCTGTCGAG 
 Primer Seq. 3'
aatctagaggtaccATGTTCACCCGGGAGAGGGAG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 AAGTTCCTGC TGGCTGTCGA GCGCGGCGAN TATGCCGAAT GTGCGCAGGA TCCTGCAGAA 
0061 GGCGCTGCGC CAATCAGCAC ATCAACATCA ACTGCATGGA CCCATTGGNC CGTCGGGCCC 
0121 TCACNCCTAG CGATAGACAA CGAGAACCTG GAGATGGTAG AGCTGCTCGT CGTCATGGGG 
0181 GTGGAGACCA AGGACGCCCT ACTGCACGCC ATCAATGCGG AGTTTGTCGA GGCTGTGGAG 
0241 CTCCTGCTCG AGCACGAGGA GCTTATCTAC AAGGAGGGCG AGCCCTACAG TTGGCAAAAA 
0301 GTAGACATAA ACACGGCTAT GTTTGCGCCG GATATCACGC CTCTGATGCT GGCCGCCCAC 
0361 AAGAACAACT TTGAGATACT TCGCATTCTG TTGGATCGCG GAGCAGNCGG TGCCAGTGCC 
0421 ACATGATATA CGTTGCGGTT GTGAGGAGTG CGTCCGCCTG ACCGCGGAGG ACTCTCTGAG 
0481 GCACTCCCTC TCCCGGGTGA ACAT 
 in silico PCR Fragment
0001 AAGTTCCTGC TGGCTGTCGA GCGCGGCGA- TATGCCGAAT GTGCGCAGGA TCCTGCAGAA 
0061 GGCGCTGCGC C-ATCAGCAC ATCAACATCA ACTGCATGGA CCCATTGGGC CGTCGGGCCC 
0121 TCAC-CCTAG CGATAGACAA CGAGAACCTG GAGATGGTAG AGCTGCTCGT CGTCATGGGG 
0181 GTGGAGACCA AGGACGCCCT ACTGCACGCC ATCAATGCGG AGTTTGTCGA GGCTGTGGAG 
0241 CTCCTGCTCG AGCACGAGGA GCTTATCTAC AAGGAGGGCG AGCCCTACAG TTGGCAAAAA 
0301 GTAGACATAA ACACGGCTAT GTTTGCGCCG GATATCACGC CTCTGATGCT GGCCGCCCAC 
0361 AAGAACAACT TTGAGATACT TCGCATTCTG TTGGATCGCG GAGCAG-CGG TGCCAGTGCC 
0421 ACATGATATA CGTTGCGGTT GTGAGGAGTG CGTCCGCCTG ACCGCGGAGG ACTCTCTGAG 
0481 GCACTCCCTC TCCCGGGTGA ACAT 
 Assemble Data

18345R-2.IR_full       1   AAGTTCCTGCTGGCTGTCGAGCGCGGCGANTATGCCGAATGTGCGCAGGATCCTGCAGAA 60
                           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
18345R-2.in silico     1   AAGTTCCTGCTGGCTGTCGAGCGCGGCGA-TATGCCGAATGTGCGCAGGATCCTGCAGAA 60


18345R-2.IR_full       61  GGCGCTGCGCCAATCAGCACATCAACATCAACTGCATGGACCCATTGGNCCGTCGGGCCC 120
                           ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
18345R-2.in silico     61  GGCGCTGCGCC-ATCAGCACATCAACATCAACTGCATGGACCCATTGGGCCGTCGGGCCC 120


18345R-2.IR_full       121 TCACNCCTAGCGATAGACAACGAGAACCTGGAGATGGTAGAGCTGCTCGTCGTCATGGGG 180
                           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
18345R-2.in silico     121 TCAC-CCTAGCGATAGACAACGAGAACCTGGAGATGGTAGAGCTGCTCGTCGTCATGGGG 180


18345R-2.IR_full       181 GTGGAGACCAAGGACGCCCTACTGCACGCCATCAATGCGGAGTTTGTCGAGGCTGTGGAG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18345R-2.in silico     181 GTGGAGACCAAGGACGCCCTACTGCACGCCATCAATGCGGAGTTTGTCGAGGCTGTGGAG 240


18345R-2.IR_full       241 CTCCTGCTCGAGCACGAGGAGCTTATCTACAAGGAGGGCGAGCCCTACAGTTGGCAAAAA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18345R-2.in silico     241 CTCCTGCTCGAGCACGAGGAGCTTATCTACAAGGAGGGCGAGCCCTACAGTTGGCAAAAA 300


18345R-2.IR_full       301 GTAGACATAAACACGGCTATGTTTGCGCCGGATATCACGCCTCTGATGCTGGCCGCCCAC 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18345R-2.in silico     301 GTAGACATAAACACGGCTATGTTTGCGCCGGATATCACGCCTCTGATGCTGGCCGCCCAC 360


18345R-2.IR_full       361 AAGAACAACTTTGAGATACTTCGCATTCTGTTGGATCGCGGAGCAGNCGGTGCCAGTGCC 420
                           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
18345R-2.in silico     361 AAGAACAACTTTGAGATACTTCGCATTCTGTTGGATCGCGGAGCAG-CGGTGCCAGTGCC 420


18345R-2.IR_full       421 ACATGATATACGTTGCGGTTGTGAGGAGTGCGTCCGCCTGACCGCGGAGGACTCTCTGAG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18345R-2.in silico     421 ACATGATATACGTTGCGGTTGTGAGGAGTGCGTCCGCCTGACCGCGGAGGACTCTCTGAG 480


18345R-2.IR_full       481 GCACTCCCTCTCCCGGGTGAACAT 504
                           ||||||||||||||||||||||||
18345R-2.in silico     481 GCACTCCCTCTCCCGGGTGAACAT 504

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_057547.3  CG18345-RA, transcript variant A (trpl), mRNA 
100   482  NM_165694.1  CG18345-RB, transcript variant B (trpl), mRNA 
0   NM_057374.2  CG3722-RA (shg), mRNA 
0   41  NM_135958.3  CG5996-RA, transcript variant A (trpgamma), mRNA 
0   41  NM_165169.3  CG5996-RB, transcript variant B (trpgamma), mRNA 
0   NM_079632.4  CG4264-RA, transcript variant A (Hsc70-4), mRNA 
0   NM_176502.1  CG4264-RE, transcript variant E (Hsc70-4), mRNA 
0   NM_169626.1  CG4264-RC, transcript variant C (Hsc70-4), mRNA 
0   NM_169627.1  CG4264-RD, transcript variant D (Hsc70-4), mRNA 
0   NM_169625.1  CG4264-RB, transcript variant B (Hsc70-4), mRNA 
0   NM_176503.1  CG4264-RF, transcript variant F (Hsc70-4), mRNA 
0   NM_132393.2  CG2221-RA (l(1)G0289), mRNA 
0   NR_002550.1  CR33655, miscRNA 
0   NM_137733.2  CG9485-RC, transcript variant C (CG9485), mRNA 
0   NM_166444.1  CG9485-RB, transcript variant B (CG9485), mRNA 
0   NM_166443.1  CG9485-RA, transcript variant A (CG9485), mRNA 
0   NM_080112.1  CG1857-RA (nec), mRNA 
0   NM_079814.2  CG5502-RA (RpL4), mRNA 
0   NM_130526.2  CG3655-RA (CG3655), mRNA 
0   NM_141390.1  CG10296-RA (CG10296), mRNA 
0   NM_170155.1  CG31127-RA (Wsck), mRNA 
0   NM_206519.1  CG4433-RB, transcript variant B (CG4433), mRNA 
0   NM_142600.2  CG4433-RA, transcript variant A (CG4433), mRNA 
0   NM_144349.2  CG12132-RA (c11.1), mRNA 
0   NM_137312.2  CG5348-RA (CG5348), mRNA 
0   NM_137297.1  CG8303-RA (CG8303), mRNA 
0   NM_078699.2  CG1692-RA (mal), mRNA 
0   NM_132788.2  CG9114-RA (CG9114), mRNA 
0   31  NM_057420.3  CG7875-RA (trp), mRNA 
0   NM_135967.1  CG13272-RA (CG13272), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
DC
DM
VM
+- 
VB
 
Caspase-3 signal
N
 
DB
++ 
DC
++ 
DM
VM
VB
Dcompartment   Penetrance
     

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