|
NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
|
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
18345R-2 |
Symbol |
trpl |
Full Name |
trp-like |
CG No |
CG18345 |
Old CG No |
CG18345 |
Synonyms |
TRPL, dTRPL, DmTRPL, dTrpL, TrpL, trp-l, CG1694, CG18345, trpl |
Accession No (Link to NCBI) |
NM_057547.3 |
Inserted Chr. |
lll |
Insertional Mutation |
|
Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
|
Reference
[Please submit your publication]
|
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
|
Comment |
|
Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgAAGTTCCTGCTGGCTGTCGAG |
Primer Seq. 3' |
aatctagaggtaccATGTTCACCCGGGAGAGGGAG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 AAGTTCCTGC TGGCTGTCGA GCGCGGCGAN TATGCCGAAT GTGCGCAGGA TCCTGCAGAA
0061 GGCGCTGCGC CAATCAGCAC ATCAACATCA ACTGCATGGA CCCATTGGNC CGTCGGGCCC
0121 TCACNCCTAG CGATAGACAA CGAGAACCTG GAGATGGTAG AGCTGCTCGT CGTCATGGGG
0181 GTGGAGACCA AGGACGCCCT ACTGCACGCC ATCAATGCGG AGTTTGTCGA GGCTGTGGAG
0241 CTCCTGCTCG AGCACGAGGA GCTTATCTAC AAGGAGGGCG AGCCCTACAG TTGGCAAAAA
0301 GTAGACATAA ACACGGCTAT GTTTGCGCCG GATATCACGC CTCTGATGCT GGCCGCCCAC
0361 AAGAACAACT TTGAGATACT TCGCATTCTG TTGGATCGCG GAGCAGNCGG TGCCAGTGCC
0421 ACATGATATA CGTTGCGGTT GTGAGGAGTG CGTCCGCCTG ACCGCGGAGG ACTCTCTGAG
0481 GCACTCCCTC TCCCGGGTGA ACAT |
in silico PCR Fragment |
0001 AAGTTCCTGC TGGCTGTCGA GCGCGGCGA- TATGCCGAAT GTGCGCAGGA TCCTGCAGAA
0061 GGCGCTGCGC C-ATCAGCAC ATCAACATCA ACTGCATGGA CCCATTGGGC CGTCGGGCCC
0121 TCAC-CCTAG CGATAGACAA CGAGAACCTG GAGATGGTAG AGCTGCTCGT CGTCATGGGG
0181 GTGGAGACCA AGGACGCCCT ACTGCACGCC ATCAATGCGG AGTTTGTCGA GGCTGTGGAG
0241 CTCCTGCTCG AGCACGAGGA GCTTATCTAC AAGGAGGGCG AGCCCTACAG TTGGCAAAAA
0301 GTAGACATAA ACACGGCTAT GTTTGCGCCG GATATCACGC CTCTGATGCT GGCCGCCCAC
0361 AAGAACAACT TTGAGATACT TCGCATTCTG TTGGATCGCG GAGCAG-CGG TGCCAGTGCC
0421 ACATGATATA CGTTGCGGTT GTGAGGAGTG CGTCCGCCTG ACCGCGGAGG ACTCTCTGAG
0481 GCACTCCCTC TCCCGGGTGA ACAT |
Assemble Data |
18345R-2.IR_full 1 AAGTTCCTGCTGGCTGTCGAGCGCGGCGANTATGCCGAATGTGCGCAGGATCCTGCAGAA 60
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
18345R-2.in silico 1 AAGTTCCTGCTGGCTGTCGAGCGCGGCGA-TATGCCGAATGTGCGCAGGATCCTGCAGAA 60
18345R-2.IR_full 61 GGCGCTGCGCCAATCAGCACATCAACATCAACTGCATGGACCCATTGGNCCGTCGGGCCC 120
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
18345R-2.in silico 61 GGCGCTGCGCC-ATCAGCACATCAACATCAACTGCATGGACCCATTGGGCCGTCGGGCCC 120
18345R-2.IR_full 121 TCACNCCTAGCGATAGACAACGAGAACCTGGAGATGGTAGAGCTGCTCGTCGTCATGGGG 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
18345R-2.in silico 121 TCAC-CCTAGCGATAGACAACGAGAACCTGGAGATGGTAGAGCTGCTCGTCGTCATGGGG 180
18345R-2.IR_full 181 GTGGAGACCAAGGACGCCCTACTGCACGCCATCAATGCGGAGTTTGTCGAGGCTGTGGAG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18345R-2.in silico 181 GTGGAGACCAAGGACGCCCTACTGCACGCCATCAATGCGGAGTTTGTCGAGGCTGTGGAG 240
18345R-2.IR_full 241 CTCCTGCTCGAGCACGAGGAGCTTATCTACAAGGAGGGCGAGCCCTACAGTTGGCAAAAA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18345R-2.in silico 241 CTCCTGCTCGAGCACGAGGAGCTTATCTACAAGGAGGGCGAGCCCTACAGTTGGCAAAAA 300
18345R-2.IR_full 301 GTAGACATAAACACGGCTATGTTTGCGCCGGATATCACGCCTCTGATGCTGGCCGCCCAC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18345R-2.in silico 301 GTAGACATAAACACGGCTATGTTTGCGCCGGATATCACGCCTCTGATGCTGGCCGCCCAC 360
18345R-2.IR_full 361 AAGAACAACTTTGAGATACTTCGCATTCTGTTGGATCGCGGAGCAGNCGGTGCCAGTGCC 420
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
18345R-2.in silico 361 AAGAACAACTTTGAGATACTTCGCATTCTGTTGGATCGCGGAGCAG-CGGTGCCAGTGCC 420
18345R-2.IR_full 421 ACATGATATACGTTGCGGTTGTGAGGAGTGCGTCCGCCTGACCGCGGAGGACTCTCTGAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18345R-2.in silico 421 ACATGATATACGTTGCGGTTGTGAGGAGTGCGTCCGCCTGACCGCGGAGGACTCTCTGAG 480
18345R-2.IR_full 481 GCACTCCCTCTCCCGGGTGAACAT 504
||||||||||||||||||||||||
18345R-2.in silico 481 GCACTCCCTCTCCCGGGTGAACAT 504
|
Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
2 |
NM_057547.3 |
CG18345-RA, transcript variant A (trpl), mRNA |
100 |
482 |
0 |
0 |
2 |
NM_165694.1 |
CG18345-RB, transcript variant B (trpl), mRNA |
0 |
0 |
3 |
3 |
2 |
NM_057374.2 |
CG3722-RA (shg), mRNA |
0 |
0 |
2 |
6 |
41 |
NM_135958.3 |
CG5996-RA, transcript variant A (trpgamma), mRNA |
0 |
0 |
2 |
6 |
41 |
NM_165169.3 |
CG5996-RB, transcript variant B (trpgamma), mRNA |
0 |
0 |
2 |
4 |
4 |
NM_079632.4 |
CG4264-RA, transcript variant A (Hsc70-4), mRNA |
0 |
0 |
2 |
4 |
4 |
NM_176502.1 |
CG4264-RE, transcript variant E (Hsc70-4), mRNA |
0 |
0 |
2 |
4 |
4 |
NM_169626.1 |
CG4264-RC, transcript variant C (Hsc70-4), mRNA |
0 |
0 |
2 |
4 |
4 |
NM_169627.1 |
CG4264-RD, transcript variant D (Hsc70-4), mRNA |
0 |
0 |
2 |
4 |
4 |
NM_169625.1 |
CG4264-RB, transcript variant B (Hsc70-4), mRNA |
0 |
0 |
2 |
4 |
4 |
NM_176503.1 |
CG4264-RF, transcript variant F (Hsc70-4), mRNA |
0 |
0 |
2 |
3 |
3 |
NM_132393.2 |
CG2221-RA (l(1)G0289), mRNA |
0 |
0 |
1 |
6 |
9 |
NR_002550.1 |
CR33655, miscRNA |
0 |
0 |
1 |
6 |
9 |
NM_137733.2 |
CG9485-RC, transcript variant C (CG9485), mRNA |
0 |
0 |
1 |
6 |
9 |
NM_166444.1 |
CG9485-RB, transcript variant B (CG9485), mRNA |
0 |
0 |
1 |
6 |
9 |
NM_166443.1 |
CG9485-RA, transcript variant A (CG9485), mRNA |
0 |
0 |
1 |
5 |
2 |
NM_080112.1 |
CG1857-RA (nec), mRNA |
0 |
0 |
1 |
5 |
2 |
NM_079814.2 |
CG5502-RA (RpL4), mRNA |
0 |
0 |
1 |
4 |
6 |
NM_130526.2 |
CG3655-RA (CG3655), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_141390.1 |
CG10296-RA (CG10296), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_170155.1 |
CG31127-RA (Wsck), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_206519.1 |
CG4433-RB, transcript variant B (CG4433), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_142600.2 |
CG4433-RA, transcript variant A (CG4433), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_144349.2 |
CG12132-RA (c11.1), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_137312.2 |
CG5348-RA (CG5348), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_137297.1 |
CG8303-RA (CG8303), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_078699.2 |
CG1692-RA (mal), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_132788.2 |
CG9114-RA (CG9114), mRNA |
0 |
0 |
0 |
8 |
31 |
NM_057420.3 |
CG7875-RA (trp), mRNA |
0 |
0 |
0 |
8 |
4 |
NM_135967.1 |
CG13272-RA (CG13272), mRNA |
|
Wing Disc |
GFP
|
Puc
|
Caspase
|
DAPI
|
Merge
|
Figure
|
JNK signal
N |
|
|
|
DB |
|
+ |
|
DC |
|
+ |
|
DM |
|
+ |
|
VM |
|
+- |
|
VB |
|
|
|
|
Caspase-3 signal
N |
|
|
|
DB |
|
++ |
|
DC |
|
++ |
|
DM |
|
+ |
|
VM |
|
+ |
|
VB |
|
+ |
|
|
|
|
|
|