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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
18332R-3 |
| Symbol |
CSN3 |
Full Name |
COP9 complex homolog subunit 3 |
| CG No |
CG18332 |
Old CG No |
CG18332 |
| Synonyms |
Dch3, DCH3, CH3, CG18332, CSN3 |
| Accession No (Link to NCBI) |
NM_079466.2 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
semi-lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340
[
PubMed ID = 25473846
]
[
RRC reference
]
Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G.
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network.
Dev Cell (2010) 18(5) 862-76
[
PubMed ID = 20493818
]
[
RRC reference
]
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| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgGAGTGCGTCCGGAAGCTATCG |
| Primer Seq. 3' |
aatctagaggtaccGTTGCGTCTTGCACTCGGCTG |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 NAGTGCGTCC gGAAGCTATC GGGAGCTGGC CGAGGAGCTG CCGGAGTCGC TGTCGCTGCT
0061 AGCCCGCAAC TGGAGCATTC TGGACAACGT GCTGGAGACG CTAGACATGC AGCAGCACTC
0121 GCTGGGCGTG CTCTATGTGC TCCTGGCCAA ACTGCACAGT GCGTCCACCG CGNAATCCGG
0181 AGCCGGNTAC AACTTATCCA GCTGATGCGG GACTTTGTGC AGCGCAACAA TAACGANGCA
0241 GCTGCGCTAT GCGGTGTGCG CCNTTTTACG AAACATGCCA TCTGTTTACC GAGTTTGTGG
0301 TGCAAAAGAA CCTCAGCATC CTGGGCATAC GCATCATTTC GCGCGCCATC GACCAGATTC
0361 GACAGTTGGA AACCCAGTTA ACTCCCATAC ACGCCGATCT CTGCCTGCTC AGCCTGAAGG
0421 CGANAAAACT TCAGTGTGGT GCTGCCGTAT CTGGACGCGG ACATCACGGA CATCTCCACC
0481 GTGGCAGCCG AGTGCAAGAC GCAAC |
| in silico PCR Fragment |
0001 GAGTGCGTCC GGAAGCTATC GGGAGCTGGC CGAGGAGCTG CCGGAGTCGC TGTCGCTGCT
0061 AGCCCGCAAC TGGAGCATTC TGGACAACGT GCTGGAGACG CTAGACATGC AGCAGCACTC
0121 GCTGGGCGTG CTCTATGTGC TCCTGGCCAA ACTGCACAGT GCGTCCACCG CG-AATCCGG
0181 AGCCGG-TAC AACTTATCCA GCTGATGCGG GACTTTGTGC AGCGCAACAA TAACGA-GCA
0241 GCTGCGCTAT GCGGTGTGCG CC-TTTTACG AAACATGCCA TCTGTTTACC GAGTTTGTGG
0301 TGCAAAAGAA CCTCAGCATC CTGGGCATAC GCATCATTTC GCGCGCCATC GACCAGATTC
0361 GACAGTTGGA AACCCAGTTA ACTCCCATAC ACGCCGATCT CTGCCTGCTC AGCCTGAAGG
0421 CGA-AAAACT TCAGTGTGGT GCTGCCGTAT CTGGACGCGG ACATCACGGA CATCTCCACC
0481 GTGGCAGCCG AGTGCAAGAC GCAAC |
| Assemble Data |
18332R-3.IR_full 1 AGTGCGTCCGGAAGCTATCGGGAGCTGGCCGAGGAGCTGCCGGAGTCGCTGTCGCTGCT 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18332R-3.in silico 1 AGTGCGTCCGGAAGCTATCGGGAGCTGGCCGAGGAGCTGCCGGAGTCGCTGTCGCTGCT 59
18332R-3.IR_full 61 AGCCCGCAACTGGAGCATTCTGGACAACGTGCTGGAGACGCTAGACATGCAGCAGCACTC 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18332R-3.in silico 61 AGCCCGCAACTGGAGCATTCTGGACAACGTGCTGGAGACGCTAGACATGCAGCAGCACTC 119
18332R-3.IR_full 121 GCTGGGCGTGCTCTATGTGCTCCTGGCCAAACTGCACAGTGCGTCCACCGCGNAATCCGG 179
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
18332R-3.in silico 121 GCTGGGCGTGCTCTATGTGCTCCTGGCCAAACTGCACAGTGCGTCCACCGCG-AATCCGG 179
18332R-3.IR_full 181 AGCCGGNTACAACTTATCCAGCTGATGCGGGACTTTGTGCAGCGCAACAATAACGANGCA 239
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
18332R-3.in silico 181 AGCCGG-TACAACTTATCCAGCTGATGCGGGACTTTGTGCAGCGCAACAATAACGA-GCA 239
18332R-3.IR_full 241 GCTGCGCTATGCGGTGTGCGCCNTTTTACGAAACATGCCATCTGTTTACCGAGTTTGTGG 299
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
18332R-3.in silico 241 GCTGCGCTATGCGGTGTGCGCC-TTTTACGAAACATGCCATCTGTTTACCGAGTTTGTGG 299
18332R-3.IR_full 301 TGCAAAAGAACCTCAGCATCCTGGGCATACGCATCATTTCGCGCGCCATCGACCAGATTC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18332R-3.in silico 301 TGCAAAAGAACCTCAGCATCCTGGGCATACGCATCATTTCGCGCGCCATCGACCAGATTC 359
18332R-3.IR_full 361 GACAGTTGGAAACCCAGTTAACTCCCATACACGCCGATCTCTGCCTGCTCAGCCTGAAGG 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18332R-3.in silico 361 GACAGTTGGAAACCCAGTTAACTCCCATACACGCCGATCTCTGCCTGCTCAGCCTGAAGG 419
18332R-3.IR_full 421 CGANAAAACTTCAGTGTGGTGCTGCCGTATCTGGACGCGGACATCACGGACATCTCCACC 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18332R-3.in silico 421 CGA-AAAACTTCAGTGTGGTGCTGCCGTATCTGGACGCGGACATCACGGACATCTCCACC 479
18332R-3.IR_full 481 GTGGCAGCCGAGTGCAAGACGCAAC 504
|||||||||||||||||||||||||
18332R-3.in silico 481 GTGGCAGCCGAGTGCAAGACGCAAC 504
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_079466.2 |
CG18332-RA (CSN3), mRNA |
| 0 |
0 |
5 |
4 |
9 |
NM_057771.2 |
CG1864-RB, transcript variant B (Hr38), mRNA |
| 0 |
0 |
4 |
4 |
2 |
NM_142435.2 |
CG7183-RA (CG7183), mRNA |
| 0 |
0 |
3 |
7 |
5 |
NM_078604.3 |
CG32592-RA (hiw), mRNA |
| 0 |
0 |
3 |
3 |
5 |
NM_167357.1 |
CG15745-RB, transcript variant B (CG15745), mRNA |
| 0 |
0 |
3 |
3 |
5 |
NM_132645.2 |
CG15745-RA, transcript variant A (CG15745), mRNA |
| 0 |
0 |
2 |
7 |
2 |
NM_137299.1 |
CG5065-RA (CG5065), mRNA |
| 0 |
0 |
2 |
4 |
5 |
NM_137296.2 |
CG8306-RA (CG8306), mRNA |
| 0 |
0 |
2 |
3 |
2 |
NM_134609.1 |
CG10918-RA (CG10918), mRNA |
| 0 |
0 |
2 |
2 |
9 |
NM_165849.1 |
CG8983-RA, transcript variant A (ERp60), mRNA |
| 0 |
0 |
2 |
2 |
9 |
NM_136866.2 |
CG8983-RB, transcript variant B (ERp60), mRNA |
| 0 |
0 |
2 |
2 |
6 |
NM_130540.2 |
CG11398-RA (CG11398), mRNA |
| 0 |
0 |
2 |
2 |
6 |
NM_176065.1 |
CG1864-RC, transcript variant C (Hr38), mRNA |
| 0 |
0 |
2 |
2 |
4 |
NM_001042868.1 |
CG34124-RA (CG34124), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_170050.1 |
CG31365-RA (CG31365), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_139894.1 |
CG8492-RA (CG8492), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_136069.2 |
CG10600-RA (CG10600), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_135483.2 |
CG31712-RA (CG31712), mRNA |
| 0 |
0 |
1 |
7 |
6 |
NM_140321.1 |
CG10660-RA (CG10660), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_165709.1 |
CG1516-RI, transcript variant I (CG1516), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_165705.1 |
CG1516-RA, transcript variant A (CG1516), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_165710.1 |
CG1516-RJ, transcript variant J (CG1516), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_136683.2 |
CG1516-RE, transcript variant E (CG1516), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_165707.1 |
CG1516-RD, transcript variant D (CG1516), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_165706.1 |
CG1516-RB, transcript variant B (CG1516), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_165711.1 |
CG1516-RK, transcript variant K (CG1516), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_165708.1 |
CG1516-RG, transcript variant G (CG1516), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_165712.1 |
CG1516-RL, transcript variant L (CG1516), mRNA |
| 0 |
0 |
1 |
4 |
4 |
NM_137613.2 |
CG11099-RA (CG11099), mRNA |
| 0 |
0 |
1 |
3 |
9 |
NM_136422.2 |
CG1845-RA (CG1845), mRNA |
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