National Institute of Genetics
Contact us      Quick Search       
NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -
Home Home
Japanese | English  
NIG-RNAi Strains Detail
Request : Click the "Order" button to request for this stock discarded request_help.gif
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 18095R-3 
 Symbol CG18095  Full Name CG18095 
 CG No CG18095  Old CG No CG18095 
 Synonyms DS05899.7, BG:DS05899.7, CG18095 
 Accession No (Link to NCBI) NM_135853.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]

Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGCTGATCTTTAGCTTTAGCCC 
 Primer Seq. 3'
aatctagaggtaccTACCATCTATGTGCGCCAGTT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GCTGTATCTT TAGCTTTAGC CCGAGGTTAA GTTGCCTGCA GTTGAGCAAG TGCAATAATA 
0061 CTGAGGTGAC CTTAATACGG AAGACGGAGC TCTTGACGTC ACTCACATTG AGCANACTNG 
0121 CACGCTGCCG CATGTGGAAA ATGGATTTTT CGTACGGTTT GATCATCTGC TTCATTTGGA 
0181 ACTGCAGCAC AGTGGACTGA GTGATTTAGA TGATTTTTCA CTGAATGGCT TGACAAAGTT 
0241 ACAATACCTT TCCCTGTCCC ACAACAATCT GAGCAGTCTG AGATCCTGGT CCAGTGAGCC 
0301 TTTGGGTGCA TTAACCAATT TGGATCTAAG CCACAATATG TTAAGCAAAC TGAGTGTCAA 
0361 GAGCTTTGAG CAATATCCCC AGTTGCAACA GCTCGNCTTG CGTTACAATC GGATTAGTCA 
0421 AATAGAGAAT GACTCCTTTG ATGGATTATC TCATTTAAAG CATCTTTATC TGAACGGAAA 
0481 CCAACTGGCG CACATAGATG GTA 
 in silico PCR Fragment
0001 GCTG-ATCTT TAGCTTTAGC CCGAGGTTAA GTTGCCTGCA GTTGAGCAAG TGCAATAATA 
0061 CTGAGGTGAC CTTAATACGG AAGACGGAGC TCTTGACGTC ACTCACATTG AGCA-ACT-G 
0121 CACGCTGCCG CATGTGGAAA ATGGATTTTT CGTACGGTTT GATCATCTGC TTCATTTAGA 
0181 ACTGCAGCAC AGTGGACTGA GTGATTTAGA TGATTTTTCA CTGAATGGCT TGACAAAGTT 
0241 ACAATACCTT TCCCTGTCCC ACAACAATCT GAGCAGTCTG AGATCCTGGT CCAGTGAGCC 
0301 TTTGGGTGCA TTAACCAATT TGGATCTAAG CCACAATATG TTAAGCAAAC TGAGTGTCAA 
0361 GAGCTTTGAG CAATATCCCC AGTTGCAACA GCTCGACTTG CGTTACAATC GGATTAGTCA 
0421 AATAGAGAAT GACTCCTTTG ATGGATTATC TCATTTAAAG CATCTTTATC TGAACGGAAA 
0481 CCAACTGGCG CACATAGATG GTA 
 Assemble Data

18095R-3.IR_full       1   GCTGTATCTTTAGCTTTAGCCCGAGGTTAAGTTGCCTGCAGTTGAGCAAGTGCAATAATA 60
                           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
18095R-3.in silico     1   GCTG-ATCTTTAGCTTTAGCCCGAGGTTAAGTTGCCTGCAGTTGAGCAAGTGCAATAATA 60


18095R-3.IR_full       61  CTGAGGTGACCTTAATACGGAAGACGGAGCTCTTGACGTCACTCACATTGAGCANACTNG 120
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
18095R-3.in silico     61  CTGAGGTGACCTTAATACGGAAGACGGAGCTCTTGACGTCACTCACATTGAGCA-ACT-G 120


18095R-3.IR_full       121 CACGCTGCCGCATGTGGAAAATGGATTTTTCGTACGGTTTGATCATCTGCTTCATTTGGA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
18095R-3.in silico     121 CACGCTGCCGCATGTGGAAAATGGATTTTTCGTACGGTTTGATCATCTGCTTCATTTAGA 180


18095R-3.IR_full       181 ACTGCAGCACAGTGGACTGAGTGATTTAGATGATTTTTCACTGAATGGCTTGACAAAGTT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18095R-3.in silico     181 ACTGCAGCACAGTGGACTGAGTGATTTAGATGATTTTTCACTGAATGGCTTGACAAAGTT 240


18095R-3.IR_full       241 ACAATACCTTTCCCTGTCCCACAACAATCTGAGCAGTCTGAGATCCTGGTCCAGTGAGCC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18095R-3.in silico     241 ACAATACCTTTCCCTGTCCCACAACAATCTGAGCAGTCTGAGATCCTGGTCCAGTGAGCC 300


18095R-3.IR_full       301 TTTGGGTGCATTAACCAATTTGGATCTAAGCCACAATATGTTAAGCAAACTGAGTGTCAA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18095R-3.in silico     301 TTTGGGTGCATTAACCAATTTGGATCTAAGCCACAATATGTTAAGCAAACTGAGTGTCAA 360


18095R-3.IR_full       361 GAGCTTTGAGCAATATCCCCAGTTGCAACAGCTCGNCTTGCGTTACAATCGGATTAGTCA 420
                           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
18095R-3.in silico     361 GAGCTTTGAGCAATATCCCCAGTTGCAACAGCTCGACTTGCGTTACAATCGGATTAGTCA 420


18095R-3.IR_full       421 AATAGAGAATGACTCCTTTGATGGATTATCTCATTTAAAGCATCTTTATCTGAACGGAAA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18095R-3.in silico     421 AATAGAGAATGACTCCTTTGATGGATTATCTCATTTAAAGCATCTTTATCTGAACGGAAA 480


18095R-3.IR_full       481 CCAACTGGCGCACATAGATGGTA 503
                           |||||||||||||||||||||||
18095R-3.in silico     481 CCAACTGGCGCACATAGATGGTA 503

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_135853.2  CG18095-RA (CG18095), mRNA 
0   NM_167001.1  CG4944-RA, transcript variant A (cib), mRNA 
0   NM_167002.1  CG4944-RC, transcript variant C (cib), mRNA 
0   NM_135336.2  CG7466-RA (CG7466), mRNA 
0   NM_137196.1  CG12964-RA (CG12964), mRNA 
0   NM_132363.1  CG1791-RA (CG1791), mRNA 
0   NM_135537.1  CG5375-RA (CG5375), mRNA 
0   NM_141569.3  CG8202-RA (CG8202), mRNA 
0   NM_166019.1  CG18076-RH, transcript variant H (shot), mRNA 
0   NM_166018.1  CG18076-RC, transcript variant C (shot), mRNA 
0   NM_079009.2  CG18076-RA, transcript variant A (shot), mRNA 
0   NM_166017.1  CG18076-RE, transcript variant E (shot), mRNA 
0   NM_166016.1  CG18076-RB, transcript variant B (shot), mRNA 
0   NM_166015.1  CG18076-RG, transcript variant G (shot), mRNA 
0   NM_135409.1  CG9468-RA (CG9468), mRNA 
0   NM_135408.2  CG9466-RA (CG9466), mRNA 
0   NM_001043328.1  CG8144-RK, transcript variant K (ps), mRNA 
0   NM_001043329.1  CG8144-RG, transcript variant G (ps), mRNA 
0   NM_001043330.1  CG8144-RJ, transcript variant J (ps), mRNA 
0   NM_001043331.1  CG8144-RH, transcript variant H (ps), mRNA 
0   NM_169283.1  CG8144-RB, transcript variant B (ps), mRNA 
0   NM_001043327.1  CG8144-RF, transcript variant F (ps), mRNA 
0   NM_001043326.1  CG8144-RI, transcript variant I (ps), mRNA 
0   NM_169284.2  CG8144-RD, transcript variant D (ps), mRNA 
0   NM_169285.3  CG8144-RC, transcript variant C (ps), mRNA 
0   NM_080303.2  CG3707-RA, transcript variant A (wapl), mRNA 
0   NM_166931.1  CG3707-RB, transcript variant B (wapl), mRNA 
0   NM_167438.1  CG9151-RB, transcript variant B (acj6), mRNA 
0   NM_001014744.1  CG9151-RC, transcript variant C (acj6), mRNA 
0   NM_080137.2  CG9151-RA, transcript variant A (acj6), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
DC
++ 
DM
VM
VB
+- 
Caspase-3 signal
N
DB
DC
++ 
DM
++ 
VM
VB
Dcompartment   Penetrance
     

SHIGEN - SHared Information of GENetic resources - National Institute of Genetics (NIG)
Copyright (c) National Institute of Genetics (NIG)
All rights reserved.
The NIG-Fly is a part of the National BioResource Project which started in 2002.