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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
discarded
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
18095R-3 |
Symbol |
CG18095 |
Full Name |
CG18095 |
CG No |
CG18095 |
Old CG No |
CG18095 |
Synonyms |
DS05899.7, BG:DS05899.7, CG18095 |
Accession No (Link to NCBI) |
NM_135853.2 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD. Zyxin links fat signaling to the hippo pathway. PLoS Biol (2011) 9(6) e1000624
[
PubMed ID = 21666802
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGCTGATCTTTAGCTTTAGCCC |
Primer Seq. 3' |
aatctagaggtaccTACCATCTATGTGCGCCAGTT |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 GCTGTATCTT TAGCTTTAGC CCGAGGTTAA GTTGCCTGCA GTTGAGCAAG TGCAATAATA
0061 CTGAGGTGAC CTTAATACGG AAGACGGAGC TCTTGACGTC ACTCACATTG AGCANACTNG
0121 CACGCTGCCG CATGTGGAAA ATGGATTTTT CGTACGGTTT GATCATCTGC TTCATTTGGA
0181 ACTGCAGCAC AGTGGACTGA GTGATTTAGA TGATTTTTCA CTGAATGGCT TGACAAAGTT
0241 ACAATACCTT TCCCTGTCCC ACAACAATCT GAGCAGTCTG AGATCCTGGT CCAGTGAGCC
0301 TTTGGGTGCA TTAACCAATT TGGATCTAAG CCACAATATG TTAAGCAAAC TGAGTGTCAA
0361 GAGCTTTGAG CAATATCCCC AGTTGCAACA GCTCGNCTTG CGTTACAATC GGATTAGTCA
0421 AATAGAGAAT GACTCCTTTG ATGGATTATC TCATTTAAAG CATCTTTATC TGAACGGAAA
0481 CCAACTGGCG CACATAGATG GTA |
in silico PCR Fragment |
0001 GCTG-ATCTT TAGCTTTAGC CCGAGGTTAA GTTGCCTGCA GTTGAGCAAG TGCAATAATA
0061 CTGAGGTGAC CTTAATACGG AAGACGGAGC TCTTGACGTC ACTCACATTG AGCA-ACT-G
0121 CACGCTGCCG CATGTGGAAA ATGGATTTTT CGTACGGTTT GATCATCTGC TTCATTTAGA
0181 ACTGCAGCAC AGTGGACTGA GTGATTTAGA TGATTTTTCA CTGAATGGCT TGACAAAGTT
0241 ACAATACCTT TCCCTGTCCC ACAACAATCT GAGCAGTCTG AGATCCTGGT CCAGTGAGCC
0301 TTTGGGTGCA TTAACCAATT TGGATCTAAG CCACAATATG TTAAGCAAAC TGAGTGTCAA
0361 GAGCTTTGAG CAATATCCCC AGTTGCAACA GCTCGACTTG CGTTACAATC GGATTAGTCA
0421 AATAGAGAAT GACTCCTTTG ATGGATTATC TCATTTAAAG CATCTTTATC TGAACGGAAA
0481 CCAACTGGCG CACATAGATG GTA |
Assemble Data |
18095R-3.IR_full 1 GCTGTATCTTTAGCTTTAGCCCGAGGTTAAGTTGCCTGCAGTTGAGCAAGTGCAATAATA 60
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
18095R-3.in silico 1 GCTG-ATCTTTAGCTTTAGCCCGAGGTTAAGTTGCCTGCAGTTGAGCAAGTGCAATAATA 60
18095R-3.IR_full 61 CTGAGGTGACCTTAATACGGAAGACGGAGCTCTTGACGTCACTCACATTGAGCANACTNG 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
18095R-3.in silico 61 CTGAGGTGACCTTAATACGGAAGACGGAGCTCTTGACGTCACTCACATTGAGCA-ACT-G 120
18095R-3.IR_full 121 CACGCTGCCGCATGTGGAAAATGGATTTTTCGTACGGTTTGATCATCTGCTTCATTTGGA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
18095R-3.in silico 121 CACGCTGCCGCATGTGGAAAATGGATTTTTCGTACGGTTTGATCATCTGCTTCATTTAGA 180
18095R-3.IR_full 181 ACTGCAGCACAGTGGACTGAGTGATTTAGATGATTTTTCACTGAATGGCTTGACAAAGTT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18095R-3.in silico 181 ACTGCAGCACAGTGGACTGAGTGATTTAGATGATTTTTCACTGAATGGCTTGACAAAGTT 240
18095R-3.IR_full 241 ACAATACCTTTCCCTGTCCCACAACAATCTGAGCAGTCTGAGATCCTGGTCCAGTGAGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18095R-3.in silico 241 ACAATACCTTTCCCTGTCCCACAACAATCTGAGCAGTCTGAGATCCTGGTCCAGTGAGCC 300
18095R-3.IR_full 301 TTTGGGTGCATTAACCAATTTGGATCTAAGCCACAATATGTTAAGCAAACTGAGTGTCAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18095R-3.in silico 301 TTTGGGTGCATTAACCAATTTGGATCTAAGCCACAATATGTTAAGCAAACTGAGTGTCAA 360
18095R-3.IR_full 361 GAGCTTTGAGCAATATCCCCAGTTGCAACAGCTCGNCTTGCGTTACAATCGGATTAGTCA 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
18095R-3.in silico 361 GAGCTTTGAGCAATATCCCCAGTTGCAACAGCTCGACTTGCGTTACAATCGGATTAGTCA 420
18095R-3.IR_full 421 AATAGAGAATGACTCCTTTGATGGATTATCTCATTTAAAGCATCTTTATCTGAACGGAAA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
18095R-3.in silico 421 AATAGAGAATGACTCCTTTGATGGATTATCTCATTTAAAGCATCTTTATCTGAACGGAAA 480
18095R-3.IR_full 481 CCAACTGGCGCACATAGATGGTA 503
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18095R-3.in silico 481 CCAACTGGCGCACATAGATGGTA 503
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
1 |
NM_135853.2 |
CG18095-RA (CG18095), mRNA |
0 |
0 |
2 |
4 |
2 |
NM_167001.1 |
CG4944-RA, transcript variant A (cib), mRNA |
0 |
0 |
2 |
4 |
2 |
NM_167002.1 |
CG4944-RC, transcript variant C (cib), mRNA |
0 |
0 |
1 |
6 |
6 |
NM_135336.2 |
CG7466-RA (CG7466), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_137196.1 |
CG12964-RA (CG12964), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_132363.1 |
CG1791-RA (CG1791), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_135537.1 |
CG5375-RA (CG5375), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_141569.3 |
CG8202-RA (CG8202), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_166019.1 |
CG18076-RH, transcript variant H (shot), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_166018.1 |
CG18076-RC, transcript variant C (shot), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_079009.2 |
CG18076-RA, transcript variant A (shot), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_166017.1 |
CG18076-RE, transcript variant E (shot), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_166016.1 |
CG18076-RB, transcript variant B (shot), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_166015.1 |
CG18076-RG, transcript variant G (shot), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_135409.1 |
CG9468-RA (CG9468), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_135408.2 |
CG9466-RA (CG9466), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_001043328.1 |
CG8144-RK, transcript variant K (ps), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_001043329.1 |
CG8144-RG, transcript variant G (ps), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_001043330.1 |
CG8144-RJ, transcript variant J (ps), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_001043331.1 |
CG8144-RH, transcript variant H (ps), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_169283.1 |
CG8144-RB, transcript variant B (ps), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_001043327.1 |
CG8144-RF, transcript variant F (ps), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_001043326.1 |
CG8144-RI, transcript variant I (ps), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_169284.2 |
CG8144-RD, transcript variant D (ps), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_169285.3 |
CG8144-RC, transcript variant C (ps), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_080303.2 |
CG3707-RA, transcript variant A (wapl), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_166931.1 |
CG3707-RB, transcript variant B (wapl), mRNA |
0 |
0 |
0 |
6 |
5 |
NM_167438.1 |
CG9151-RB, transcript variant B (acj6), mRNA |
0 |
0 |
0 |
6 |
5 |
NM_001014744.1 |
CG9151-RC, transcript variant C (acj6), mRNA |
0 |
0 |
0 |
6 |
5 |
NM_080137.2 |
CG9151-RA, transcript variant A (acj6), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
N |
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DB |
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+ |
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DC |
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++ |
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DM |
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+ |
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VM |
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+ |
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VB |
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+- |
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Caspase-3 signal
N |
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+ |
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DB |
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+ |
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DC |
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++ |
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DM |
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++ |
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VM |
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+ |
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VB |
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+ |
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