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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 17604R-3 
 Symbol c(3)G  Full Name crossover suppressor on 3 of Gowen 
 CG No CG17604  Old CG No CG17604 
 Synonyms C(3)G, CG17604, c(3)g, c3G, cx, c(3)G 
 Accession No (Link to NCBI) NM_142233.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgAGCTCACTCGAAAGCCCCAAA 
 Primer Seq. 3'
aatctagaggtaccTCAGTTGGGTCAGCTCCAGTT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 AGCTCACTCG AAAGCCCCAA AACCAGGTAC AGTTGCCCAA GAAAAAAACA GCCAAATTCC 
0061 AACTGTTTGG AAAAAGGATC ATGTAAAAAC TCAACTTTTC GAAAGATCAA ACGAAAAGCC 
0121 ATCCAAAAAA AGAACTCCGC TAGTGGCTCC TAGAGTTCAG CAATCAAAAA TTGAAGCGCA 
0181 AACTTCTCAG GCTGTGGAAA AAACACAGGA AGACCAAACT TTTGCAGCCA CCATAGACAG 
0241 TTCAACAAAA AGTCTAAAAA AGTCTCCCAA AAACGAGGGA GAATTATGGG CAGATATTCA 
0301 GAAGCTGTCG CCCCACACGG GAATAATAAT TCATAGCTTC ATAAAGCAGT ACAACGAATC 
0361 GCTAAATAAT CTCAAGAAGA AAGGCTTGGT GGTCAGCAAG AAAATGAGAG CCATCGCCAT 
0421 GGACTCGTTG AAGAAAAAAT CGGAAAATAT CAGCTTGAAG GAAAAGTTGA CAAATATGGA 
0481 ACTGGAGCTG ACCCAACTGA  
 in silico PCR Fragment
0001 AGCTCACTCG AAAGCCCCAA AACCAGGTAC AGTTGCCCAA GAAAAAAACA GCCAAATTCC 
0061 AACTGTTTGG AAAAAGGATC ATGTAAAAAC TCAACTTTTC GAAAGATCAA ACGAAAAGCC 
0121 ATCCAAAAAA AGAACTCCGC TAGTGGCTCC TAGAGTTCAG CAATCAAAAA TTGAAGCGCA 
0181 AACTTCTCAG GCTGTGGAAA AAACACAGGA AGACCAAACT TTTGCAGCCA CCATAGACAG 
0241 TTCAACAAAA AGTCTAAAAA AGTCTCCCAA AAACGAGGGA GAATTATGGG CAGATATTCA 
0301 GAAGCTGTCG CCCCACACGG GAATAATAAT TCATAGCTTC ATAAAGCAGT ACAACGAATC 
0361 GCTAAATAAT CTCAAGAAGA AAGACTTGGT GGTCAGCAAG AAAATGAGAG CCATCGCCAT 
0421 GGACTCGCTG AAGAAAAAAT CGGAAAATAT CAGCTTGAAG GAAAAGTTGA CAAATATGGA 
0481 ACTGGAGCTG ACCCAACTGA  
 Assemble Data

17604R-3.IR_full       1   AGCTCACTCGAAAGCCCCAAAACCAGGTACAGTTGCCCAAGAAAAAAACAGCCAAATTCC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17604R-3.in silico     1   AGCTCACTCGAAAGCCCCAAAACCAGGTACAGTTGCCCAAGAAAAAAACAGCCAAATTCC 60


17604R-3.IR_full       61  AACTGTTTGGAAAAAGGATCATGTAAAAACTCAACTTTTCGAAAGATCAAACGAAAAGCC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17604R-3.in silico     61  AACTGTTTGGAAAAAGGATCATGTAAAAACTCAACTTTTCGAAAGATCAAACGAAAAGCC 120


17604R-3.IR_full       121 ATCCAAAAAAAGAACTCCGCTAGTGGCTCCTAGAGTTCAGCAATCAAAAATTGAAGCGCA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17604R-3.in silico     121 ATCCAAAAAAAGAACTCCGCTAGTGGCTCCTAGAGTTCAGCAATCAAAAATTGAAGCGCA 180


17604R-3.IR_full       181 AACTTCTCAGGCTGTGGAAAAAACACAGGAAGACCAAACTTTTGCAGCCACCATAGACAG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17604R-3.in silico     181 AACTTCTCAGGCTGTGGAAAAAACACAGGAAGACCAAACTTTTGCAGCCACCATAGACAG 240


17604R-3.IR_full       241 TTCAACAAAAAGTCTAAAAAAGTCTCCCAAAAACGAGGGAGAATTATGGGCAGATATTCA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17604R-3.in silico     241 TTCAACAAAAAGTCTAAAAAAGTCTCCCAAAAACGAGGGAGAATTATGGGCAGATATTCA 300


17604R-3.IR_full       301 GAAGCTGTCGCCCCACACGGGAATAATAATTCATAGCTTCATAAAGCAGTACAACGAATC 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17604R-3.in silico     301 GAAGCTGTCGCCCCACACGGGAATAATAATTCATAGCTTCATAAAGCAGTACAACGAATC 360


17604R-3.IR_full       361 GCTAAATAATCTCAAGAAGAAAGGCTTGGTGGTCAGCAAGAAAATGAGAGCCATCGCCAT 420
                           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
17604R-3.in silico     361 GCTAAATAATCTCAAGAAGAAAGACTTGGTGGTCAGCAAGAAAATGAGAGCCATCGCCAT 420


17604R-3.IR_full       421 GGACTCGTTGAAGAAAAAATCGGAAAATATCAGCTTGAAGGAAAAGTTGACAAATATGGA 480
                           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
17604R-3.in silico     421 GGACTCGCTGAAGAAAAAATCGGAAAATATCAGCTTGAAGGAAAAGTTGACAAATATGGA 480


17604R-3.IR_full       481 ACTGGAGCTGACCCAACTGA 500
                           ||||||||||||||||||||
17604R-3.in silico     481 ACTGGAGCTGACCCAACTGA 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_142233.1  CG17604-RA, transcript variant A (c(3)G), mRNA 
100   482  NM_169671.1  CG17604-RC, transcript variant C (c(3)G), mRNA 
100   482  NM_169670.1  CG17604-RB, transcript variant B (c(3)G), mRNA 
0   NM_141386.1  CG10298-RA (CG10298), mRNA 
0   NM_135725.1  CG5421-RA (CG5421), mRNA 
0   NM_130725.2  CG15239-RA (CG15239), mRNA 
0   NM_169820.1  CG14307-RC, transcript variant C (fru), mRNA 
0   NM_169818.1  CG14307-RH, transcript variant H (fru), mRNA 
0   NM_079673.2  CG14307-RF, transcript variant F (fru), mRNA 
0   NM_168301.1  CG5735-RD, transcript variant D (orb2), mRNA 
0   NM_140009.1  CG5735-RB, transcript variant B (orb2), mRNA 
0   NM_168300.1  CG5735-RC, transcript variant C (orb2), mRNA 
0   NM_140741.2  CG7510-RA (CG7510), mRNA 
0   NM_134768.3  CG17660-RA (CG17660), mRNA 
0   NM_167218.1  CG32685-RC (CG32685), mRNA 
0   NM_058053.3  CG6939-RA, transcript variant A (Sbf), mRNA 
0   NM_141108.1  CG7414-RA (CG7414), mRNA 
0   NM_169430.2  CG6939-RB, transcript variant B (Sbf), mRNA 
0   NM_136748.2  CG17765-RA (CG17765), mRNA 
0   NM_001015388.1  CG41127-PA (CG41127), mRNA 
0   NM_206154.1  CG33130-RB, transcript variant B (l(2)k07433), mRNA 
0   NM_176218.1  CG33130-RA, transcript variant A (l(2)k07433), mRNA 
0   NM_206153.1  CG33130-RC, transcript variant C (l(2)k07433), mRNA 
0   NM_135935.2  CG12455-RA, transcript variant A (CG12455), mRNA 
0   NM_206506.1  CG7467-RC, transcript variant C (osa), mRNA 
0   NM_079668.2  CG7467-RB, transcript variant B (osa), mRNA 
0   NM_169775.1  CG7467-RA, transcript variant A (osa), mRNA 
0   NM_170275.1  CG5462-RA, transcript variant A (scrib), mRNA 
0   NM_001014669.1  CG5462-RI, transcript variant I (scrib), mRNA 
0   NM_170277.1  CG5462-RC, transcript variant C (scrib), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
+- 
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
DC
++ 
DM
VM
 
VB
 
Dcompartment   Penetrance
   

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