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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 17379R-3 
 Symbol CG17379  Full Name CG17379 
 CG No CG17379  Old CG No CG17379 
 Synonyms CG17379 
 Accession No (Link to NCBI) NM_142887.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]

Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgTACAGCATGGTATTCAGTCCC 
 Primer Seq. 3' 
aatctagaggtaccGACCACTTTTCCATTGGCATC 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 TACAGCATGG TATTCAGTCC CATGGCATTT GGGATCACTA TTGTTGCCAT GGTGTTGATT 
0061 TCATTGACTT TATCTATGGC TCTGCGTCTT CACGGATATA GAGTCAGCTT TAGTGAGTAC 
0121 TTTCTTCATG ACAGCTGTCT GAGAGGAGTC CTGTCTCAAT CCTTCTACGA GGTCCTTCGA 
0181 GCTCCAGCCT TGATAAAGGC CATGTATCTG GTGATCTGTT TGCTGGGACT GCTGATCACC 
0241 TCATGGTATA ACTCGTACTT CTCCACTTTT GTGACCAGTG CCCCCAGATT TCCACAACTC 
0301 ACCAGCTATG AGAGCATTAG GCATTCTAAT ATCAAGATAG TGATTTGGAA GCCGGAATAC 
0361 GAAATGCTTC TGTTCTTTTC GGAAAACATG GAGAAATACT CGTCGATCTT TCAGCTGCAA 
0421 GAGGACTACA AAGAGTTTTT GCATTTGCGT GACTCTTTCG ACACCAGATA CGGCTATATG 
0481 ATGCCAATGG AAAAGTGGTC  
 in silico PCR Fragment 
0001 TACAGCATGG TATTCAGTCC CATGGCATTT GGGATCACTA TTGTTGCCAT GGTGTTGATT 
0061 TCATTGACTT TATCTATGGC TCTGCGTCTT CACGGATATA GAGTCAGCTT TAGTGAGTAC 
0121 TTTCTTCATG ACAGCTGTCT GAGAGGAGTC CTGTCTCAAT CCTTCTACGA GGTCCTTCGA 
0181 GCTCCAGCCT TGATAAAGGC CATGTATCTG GTGATCTGTT TGCTGGGACT GCTGATCACC 
0241 TCATGGTATA ACTCGTACTT CTCCACTTTT GTGACCAGTG CCCCCAGATT TCCACAACTC 
0301 ACCAGCTATG AGAGCATTAG GCATTCTAAT ATCAAGATAG TGATTTGGAA GCCGGAATAC 
0361 GAAATGCTTC TGTTCTTTTC GGAAAACATG GAGAAATACT CGTCGATCTT TCAGCTGCAA 
0421 GAGGACTACA AAGAGTTTTT GCATTTGCGT GACTCTTTCG ACACCAGATA CGGCTATATG 
0481 ATGCCAATGG AAAAGTGGTC  
 Assemble Data 

17379R-3.IR_full       1   TACAGCATGGTATTCAGTCCCATGGCATTTGGGATCACTATTGTTGCCATGGTGTTGATT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17379R-3.in silico     1   TACAGCATGGTATTCAGTCCCATGGCATTTGGGATCACTATTGTTGCCATGGTGTTGATT 60


17379R-3.IR_full       61  TCATTGACTTTATCTATGGCTCTGCGTCTTCACGGATATAGAGTCAGCTTTAGTGAGTAC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17379R-3.in silico     61  TCATTGACTTTATCTATGGCTCTGCGTCTTCACGGATATAGAGTCAGCTTTAGTGAGTAC 120


17379R-3.IR_full       121 TTTCTTCATGACAGCTGTCTGAGAGGAGTCCTGTCTCAATCCTTCTACGAGGTCCTTCGA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17379R-3.in silico     121 TTTCTTCATGACAGCTGTCTGAGAGGAGTCCTGTCTCAATCCTTCTACGAGGTCCTTCGA 180


17379R-3.IR_full       181 GCTCCAGCCTTGATAAAGGCCATGTATCTGGTGATCTGTTTGCTGGGACTGCTGATCACC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17379R-3.in silico     181 GCTCCAGCCTTGATAAAGGCCATGTATCTGGTGATCTGTTTGCTGGGACTGCTGATCACC 240


17379R-3.IR_full       241 TCATGGTATAACTCGTACTTCTCCACTTTTGTGACCAGTGCCCCCAGATTTCCACAACTC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17379R-3.in silico     241 TCATGGTATAACTCGTACTTCTCCACTTTTGTGACCAGTGCCCCCAGATTTCCACAACTC 300


17379R-3.IR_full       301 ACCAGCTATGAGAGCATTAGGCATTCTAATATCAAGATAGTGATTTGGAAGCCGGAATAC 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17379R-3.in silico     301 ACCAGCTATGAGAGCATTAGGCATTCTAATATCAAGATAGTGATTTGGAAGCCGGAATAC 360


17379R-3.IR_full       361 GAAATGCTTCTGTTCTTTTCGGAAAACATGGAGAAATACTCGTCGATCTTTCAGCTGCAA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17379R-3.in silico     361 GAAATGCTTCTGTTCTTTTCGGAAAACATGGAGAAATACTCGTCGATCTTTCAGCTGCAA 420


17379R-3.IR_full       421 GAGGACTACAAAGAGTTTTTGCATTTGCGTGACTCTTTCGACACCAGATACGGCTATATG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
17379R-3.in silico     421 GAGGACTACAAAGAGTTTTTGCATTTGCGTGACTCTTTCGACACCAGATACGGCTATATG 480


17379R-3.IR_full       481 ATGCCAATGGAAAAGTGGTC 500
                           ||||||||||||||||||||
17379R-3.in silico     481 ATGCCAATGGAAAAGTGGTC 500



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  0  25  NM_142887.1  CG17379-RA (CG17379), mRNA 
0   0  1  3  2  NM_078829.1  CG16960-RA (Or33a), mRNA 
0   0  1  2  6  NM_134318.1  CG10327-RC, transcript variant C (TBPH), mRNA 
0   0  1  2  6  NM_166628.1  CG10327-RD, transcript variant D (TBPH), mRNA 
0   0  1  2  6  NM_058051.2  CG10327-RA, transcript variant A (TBPH), mRNA 
0   0  1  2  6  NM_058052.2  CG10327-RB, transcript variant B (TBPH), mRNA 
0   0  1  2  5  NM_139836.2  CG8610-RA (Cdc27), mRNA 
0   0  1  2  2  NM_137232.3  CG8389-RB, transcript variant B (CG8389), mRNA 
0   0  1  2  2  NM_166132.2  CG8389-RA, transcript variant A (CG8389), mRNA 
0   0  1  2  2  NM_078783.2  CG7068-RA (TepIII), mRNA 
0   0  0  6  7  NM_136875.2  CG17509-RA (CG17509), mRNA 
0   0  0  5  6  NM_140688.2  CG7728-RA (CG7728), mRNA 
0   0  0  4  6  NM_135262.1  CG13786-RA (CG13786), mRNA 
0   0  0  4  2  NM_176462.1  CG31116-RD, transcript variant D (CG31116), mRNA 
0   0  0  4  2  NM_169431.2  CG31116-RC, transcript variant C (CG31116), mRNA 
0   0  0  4  2  NM_169432.2  CG31116-RA, transcript variant A (CG31116), mRNA 
0   0  0  4  2  NM_141697.1  CG9461-RA (CG9461), mRNA 
0   0  0  3  6  NM_001014656.1  CG10693-RL, transcript variant L (slo), mRNA 
0   0  0  3  4  NM_135456.2  CG3841-RA (CG3841), mRNA 
0   0  0  3  3  NM_135247.2  CG9138-RA (SP1070), mRNA 
0   0  0  3  3  NM_134643.2  CG11372-RA (galectin), mRNA 
0   0  0  3  3  NM_135075.2  CG14030-RA (CG14030), mRNA 
0   0  0  3  3  NM_141695.1  CG9467-RA (CG9467), mRNA 
0   0  0  3  3  NM_137198.1  CG30464-RA (CG30464), mRNA 
0   0  0  3  3  NM_132517.1  CG15221-RA (CG15221), mRNA 
0   0  0  3  2  NM_206715.1  CG5541-RA, transcript variant A (CG5541), mRNA 
0   0  0  3  2  NM_206714.1  CG5541-RB, transcript variant B (CG5541), mRNA 
0   0  0  3  2  NM_169912.1  CG4058-RB, transcript variant B (Nep4), mRNA 
0   0  0  3  2  NM_142647.2  CG4058-RA, transcript variant A (Nep4), mRNA 
0   0  0  3  2  NM_169867.1  CG16718-RB, transcript variant B (CG16718), mRNA 

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