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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
16973R-1 |
Symbol |
msn |
Full Name |
misshapen |
CG No |
CG16973 |
Old CG No |
CG16973 |
Synonyms |
MSN, Msn, DMSN, NIK, CG16973, MESR5, l(3)6286, msm, 6286, l(3)06946, unnamed, l(3)j1E2, l(3)03349, Nik, msn, HGK |
Accession No (Link to NCBI) |
NM_079940.4 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Parsons LM, Grzeschik NA, Amaratunga K, Burke P, Quinn LM, Richardson HE. A Kinome RNAi Screen in Drosophila Identifies Novel Genes Interacting with Lgl, aPKC, and Crb Cell Polarity Genes in Epithelial Tissues. G3 (Bethesda) (2017) 7(8) 2497-2509
[
PubMed ID = 28611255
]
[
RRC reference
]
Álvarez-Fernández C, Tamirisa S, Prada F, Chernomoretz A, Podhajcer O, Blanco E, Martín-Blanco E. Identification and functional analysis of healing regulators in Drosophila. PLoS Genet (2015) 11(2) e1004965
[
PubMed ID = 25647511
]
[
RRC reference
]
Lesch C, Jo J, Wu Y, Fish GS, Galko MJ. A targeted UAS-RNAi screen in Drosophila larvae identifies wound closure genes regulating distinct cellular processes. Genetics (2010) 186(3) 943-57
[
PubMed ID = 20813879
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGGCGCACCAGCAGCAACAACA |
Primer Seq. 3' |
aatctagaggtaccGGAGCACATTCTGCCCCTTGA |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 GGCGCANCCA GCAGCAACAA CAACTGGCTC CATCGGTCAA CTGTTCACTG GACGATATCG
0061 ATCTGACGGC CCTAAAAGAT CCAGCTGGCA TCTTTGAGCT CATCGAAGTT GTGGGCAATG
0121 GCACCTACGG TCAGGTCTAC AAGGGCCGTC ACACGAAGAC TGGTCAATTG GCTGCCATAA
0181 AGGTGATGGA CGTCACCGAG GACGAAGAGG AGGAGATCAA GCTGGAGATC AATGTGCTAA
0241 AGAAATACTC GAATCACCGC AACATCGCCA CCTACTACGG AGCCTTCATC AAGAAGTCGC
0301 CACCTGGGAA GGACGATCAG CTCTGGCTGG TGATGGAGTA CTGTGGTGCT GGATCGGTAA
0361 CGGATCTGGT CAAGTCCACC AAGGGTCAGA GCCTGAAGGA GGAGTGGATC GCCTACATCT
0421 GCCGCGAGAT TCTGCGGGGC CTGAGCTACC TGCACTCGAA CAAAGTCATC CATCGCGACA
0481 TCAAGGGGCA GAATGTGCTC C |
in silico PCR Fragment |
0001 GGCGCA-CCA GCAGCAACAA CAACTGGCTC CATCGGTCAA CTGTTCACTG GACGATATCG
0061 ATCTGACGGC CCTAAAAGAT CCAGCTGGCA TCTTTGAGCT CATCGAAGTT GTGGGCAATG
0121 GCACCTACGG TCAGGTCTAC AAGGGCCGTC ACACGAAGAC TGGTCAATTG GCTGCCATAA
0181 AGGTGATGGA CGTCACCGAG GACGAAGAGG AGGAGATCAA GCTGGAGATC AATGTGCTAA
0241 AGAAATACTC GAATCACCGC AACATCGCCA CCTACTACGG AGCCTTCATC AAGAAGTCGC
0301 CACCTGGGAA GGACGATCAG CTCTGGCTGG TGATGGAGTA CTGTGGTGCT GGATCGGTAA
0361 CGGATCTGGT CAAGTCCACC AAGGGTCAGA GCCTGAAGGA GGAGTGGATC GCCTACATCT
0421 GCCGCGAGAT TCTGCGGGGC CTGAGCTACC TGCACTCGAA CAAAGTCATC CATCGCGACA
0481 TCAAGGGGCA GAATGTGCTC C |
Assemble Data |
16973R-1.IR_full 1 GGCGCANCCAGCAGCAACAACAACTGGCTCCATCGGTCAACTGTTCACTGGACGATATCG 60
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16973R-1.in silico 1 GGCGCA-CCAGCAGCAACAACAACTGGCTCCATCGGTCAACTGTTCACTGGACGATATCG 60
16973R-1.IR_full 61 ATCTGACGGCCCTAAAAGATCCAGCTGGCATCTTTGAGCTCATCGAAGTTGTGGGCAATG 120
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16973R-1.in silico 61 ATCTGACGGCCCTAAAAGATCCAGCTGGCATCTTTGAGCTCATCGAAGTTGTGGGCAATG 120
16973R-1.IR_full 121 GCACCTACGGTCAGGTCTACAAGGGCCGTCACACGAAGACTGGTCAATTGGCTGCCATAA 180
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16973R-1.in silico 121 GCACCTACGGTCAGGTCTACAAGGGCCGTCACACGAAGACTGGTCAATTGGCTGCCATAA 180
16973R-1.IR_full 181 AGGTGATGGACGTCACCGAGGACGAAGAGGAGGAGATCAAGCTGGAGATCAATGTGCTAA 240
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16973R-1.in silico 181 AGGTGATGGACGTCACCGAGGACGAAGAGGAGGAGATCAAGCTGGAGATCAATGTGCTAA 240
16973R-1.IR_full 241 AGAAATACTCGAATCACCGCAACATCGCCACCTACTACGGAGCCTTCATCAAGAAGTCGC 300
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16973R-1.in silico 241 AGAAATACTCGAATCACCGCAACATCGCCACCTACTACGGAGCCTTCATCAAGAAGTCGC 300
16973R-1.IR_full 301 CACCTGGGAAGGACGATCAGCTCTGGCTGGTGATGGAGTACTGTGGTGCTGGATCGGTAA 360
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16973R-1.in silico 301 CACCTGGGAAGGACGATCAGCTCTGGCTGGTGATGGAGTACTGTGGTGCTGGATCGGTAA 360
16973R-1.IR_full 361 CGGATCTGGTCAAGTCCACCAAGGGTCAGAGCCTGAAGGAGGAGTGGATCGCCTACATCT 420
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16973R-1.in silico 361 CGGATCTGGTCAAGTCCACCAAGGGTCAGAGCCTGAAGGAGGAGTGGATCGCCTACATCT 420
16973R-1.IR_full 421 GCCGCGAGATTCTGCGGGGCCTGAGCTACCTGCACTCGAACAAAGTCATCCATCGCGACA 480
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16973R-1.in silico 421 GCCGCGAGATTCTGCGGGGCCTGAGCTACCTGCACTCGAACAAAGTCATCCATCGCGACA 480
16973R-1.IR_full 481 TCAAGGGGCAGAATGTGCTCC 501
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16973R-1.in silico 481 TCAAGGGGCAGAATGTGCTCC 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
1 |
17 |
NM_079940.4 |
CG16973-RA, transcript variant A (msn), mRNA |
100 |
482 |
0 |
1 |
12 |
NM_206252.2 |
CG16973-RB, transcript variant B (msn), mRNA |
100 |
482 |
0 |
1 |
10 |
NM_206249.2 |
CG16973-RE, transcript variant E (msn), mRNA |
100 |
482 |
0 |
1 |
10 |
NM_206251.2 |
CG16973-RD, transcript variant D (msn), mRNA |
100 |
482 |
0 |
1 |
10 |
NM_206250.2 |
CG16973-RC, transcript variant C (msn), mRNA |
0.62 |
3 |
3 |
4 |
12 |
NM_167666.1 |
CG14217-RE, transcript variant E (Tao-1), mRNA |
0.62 |
3 |
3 |
4 |
12 |
NM_167665.1 |
CG14217-RD, transcript variant D (Tao-1), mRNA |
0.41 |
2 |
3 |
6 |
3 |
NM_206187.2 |
CG10036-RB, transcript variant B (otp), mRNA |
0.41 |
2 |
3 |
6 |
3 |
NM_001043098.1 |
CG10036-RC, transcript variant C (otp), mRNA |
0.41 |
2 |
3 |
6 |
3 |
NM_079075.4 |
CG10036-RA, transcript variant A (otp), mRNA |
0.41 |
2 |
2 |
4 |
6 |
NM_170536.2 |
CG2048-RB, transcript variant B (dco), mRNA |
0.41 |
2 |
2 |
4 |
6 |
NM_170535.1 |
CG2048-RA, transcript variant A (dco), mRNA |
0.41 |
2 |
2 |
4 |
6 |
NM_079863.2 |
CG2048-RC, transcript variant C (dco), mRNA |
0.41 |
2 |
2 |
3 |
3 |
NM_167331.1 |
CG2028-RA, transcript variant A (CkIalpha), mRNA |
0.41 |
2 |
2 |
3 |
3 |
NM_167332.1 |
CG2028-RC, transcript variant C (CkIalpha), mRNA |
0.41 |
2 |
2 |
3 |
3 |
NM_078585.3 |
CG2028-RB, transcript variant B (CkIalpha), mRNA |
0.2 |
1 |
5 |
10 |
47 |
NM_168237.1 |
CG17888-RD, transcript variant D (Pdp1), mRNA |
0.2 |
1 |
4 |
10 |
23 |
NM_137583.3 |
CG11228-RA (hpo), mRNA |
0.2 |
1 |
3 |
3 |
13 |
NM_167647.2 |
CG12199-RB, transcript variant B (kek5), mRNA |
0.2 |
1 |
3 |
3 |
13 |
NM_133154.2 |
CG12199-RA, transcript variant A (kek5), mRNA |
0.2 |
1 |
2 |
3 |
3 |
NM_144352.2 |
CG32025-RA (desert), mRNA |
0 |
0 |
18 |
60 |
176 |
NM_168571.2 |
CG32133-RA (CG32133), mRNA |
0 |
0 |
12 |
64 |
261 |
NM_167334.1 |
CG4013-RB, transcript variant B (Smr), mRNA |
0 |
0 |
12 |
64 |
261 |
NM_080536.2 |
CG4013-RA, transcript variant A (Smr), mRNA |
0 |
0 |
12 |
64 |
261 |
NM_167335.1 |
CG4013-RC, transcript variant C (Smr), mRNA |
0 |
0 |
7 |
42 |
126 |
NM_135077.2 |
CG14023-RA (CG14023), mRNA |
0 |
0 |
6 |
30 |
72 |
NM_137690.2 |
CG10543-RA, transcript variant A (CG10543), mRNA |
0 |
0 |
6 |
28 |
62 |
NM_176241.1 |
CG10543-RC, transcript variant C (CG10543), mRNA |
0 |
0 |
6 |
28 |
61 |
NM_166416.1 |
CG10543-RB, transcript variant B (CG10543), mRNA |
0 |
0 |
6 |
26 |
80 |
NM_206286.1 |
CG10107-RC, transcript variant C (CG10107), mRNA |
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