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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 16973R-1 
 Symbol msn  Full Name misshapen 
 CG No CG16973  Old CG No CG16973 
 Synonyms MSN, Msn, DMSN, NIK, CG16973, MESR5, l(3)6286, msm, 6286, l(3)06946, unnamed, l(3)j1E2, l(3)03349, Nik, msn, HGK 
 Accession No (Link to NCBI) NM_079940.4 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Parsons LM, Grzeschik NA, Amaratunga K, Burke P, Quinn LM, Richardson HE.
A Kinome RNAi Screen in Drosophila Identifies Novel Genes Interacting with Lgl, aPKC, and Crb Cell Polarity Genes in Epithelial Tissues.
G3 (Bethesda) (2017) 7(8) 2497-2509 [ PubMed ID = 28611255 ] [ RRC reference ]

Álvarez-Fernández C, Tamirisa S, Prada F, Chernomoretz A, Podhajcer O, Blanco E, Martín-Blanco E.
Identification and functional analysis of healing regulators in Drosophila.
PLoS Genet (2015) 11(2) e1004965 [ PubMed ID = 25647511 ] [ RRC reference ]

Lesch C, Jo J, Wu Y, Fish GS, Galko MJ.
A targeted UAS-RNAi screen in Drosophila larvae identifies wound closure genes regulating distinct cellular processes.
Genetics (2010) 186(3) 943-57 [ PubMed ID = 20813879 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGGCGCACCAGCAGCAACAACA 
 Primer Seq. 3'
aatctagaggtaccGGAGCACATTCTGCCCCTTGA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GGCGCANCCA GCAGCAACAA CAACTGGCTC CATCGGTCAA CTGTTCACTG GACGATATCG 
0061 ATCTGACGGC CCTAAAAGAT CCAGCTGGCA TCTTTGAGCT CATCGAAGTT GTGGGCAATG 
0121 GCACCTACGG TCAGGTCTAC AAGGGCCGTC ACACGAAGAC TGGTCAATTG GCTGCCATAA 
0181 AGGTGATGGA CGTCACCGAG GACGAAGAGG AGGAGATCAA GCTGGAGATC AATGTGCTAA 
0241 AGAAATACTC GAATCACCGC AACATCGCCA CCTACTACGG AGCCTTCATC AAGAAGTCGC 
0301 CACCTGGGAA GGACGATCAG CTCTGGCTGG TGATGGAGTA CTGTGGTGCT GGATCGGTAA 
0361 CGGATCTGGT CAAGTCCACC AAGGGTCAGA GCCTGAAGGA GGAGTGGATC GCCTACATCT 
0421 GCCGCGAGAT TCTGCGGGGC CTGAGCTACC TGCACTCGAA CAAAGTCATC CATCGCGACA 
0481 TCAAGGGGCA GAATGTGCTC C 
 in silico PCR Fragment
0001 GGCGCA-CCA GCAGCAACAA CAACTGGCTC CATCGGTCAA CTGTTCACTG GACGATATCG 
0061 ATCTGACGGC CCTAAAAGAT CCAGCTGGCA TCTTTGAGCT CATCGAAGTT GTGGGCAATG 
0121 GCACCTACGG TCAGGTCTAC AAGGGCCGTC ACACGAAGAC TGGTCAATTG GCTGCCATAA 
0181 AGGTGATGGA CGTCACCGAG GACGAAGAGG AGGAGATCAA GCTGGAGATC AATGTGCTAA 
0241 AGAAATACTC GAATCACCGC AACATCGCCA CCTACTACGG AGCCTTCATC AAGAAGTCGC 
0301 CACCTGGGAA GGACGATCAG CTCTGGCTGG TGATGGAGTA CTGTGGTGCT GGATCGGTAA 
0361 CGGATCTGGT CAAGTCCACC AAGGGTCAGA GCCTGAAGGA GGAGTGGATC GCCTACATCT 
0421 GCCGCGAGAT TCTGCGGGGC CTGAGCTACC TGCACTCGAA CAAAGTCATC CATCGCGACA 
0481 TCAAGGGGCA GAATGTGCTC C 
 Assemble Data

16973R-1.IR_full       1   GGCGCANCCAGCAGCAACAACAACTGGCTCCATCGGTCAACTGTTCACTGGACGATATCG 60
                           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
16973R-1.in silico     1   GGCGCA-CCAGCAGCAACAACAACTGGCTCCATCGGTCAACTGTTCACTGGACGATATCG 60


16973R-1.IR_full       61  ATCTGACGGCCCTAAAAGATCCAGCTGGCATCTTTGAGCTCATCGAAGTTGTGGGCAATG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16973R-1.in silico     61  ATCTGACGGCCCTAAAAGATCCAGCTGGCATCTTTGAGCTCATCGAAGTTGTGGGCAATG 120


16973R-1.IR_full       121 GCACCTACGGTCAGGTCTACAAGGGCCGTCACACGAAGACTGGTCAATTGGCTGCCATAA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16973R-1.in silico     121 GCACCTACGGTCAGGTCTACAAGGGCCGTCACACGAAGACTGGTCAATTGGCTGCCATAA 180


16973R-1.IR_full       181 AGGTGATGGACGTCACCGAGGACGAAGAGGAGGAGATCAAGCTGGAGATCAATGTGCTAA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16973R-1.in silico     181 AGGTGATGGACGTCACCGAGGACGAAGAGGAGGAGATCAAGCTGGAGATCAATGTGCTAA 240


16973R-1.IR_full       241 AGAAATACTCGAATCACCGCAACATCGCCACCTACTACGGAGCCTTCATCAAGAAGTCGC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16973R-1.in silico     241 AGAAATACTCGAATCACCGCAACATCGCCACCTACTACGGAGCCTTCATCAAGAAGTCGC 300


16973R-1.IR_full       301 CACCTGGGAAGGACGATCAGCTCTGGCTGGTGATGGAGTACTGTGGTGCTGGATCGGTAA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16973R-1.in silico     301 CACCTGGGAAGGACGATCAGCTCTGGCTGGTGATGGAGTACTGTGGTGCTGGATCGGTAA 360


16973R-1.IR_full       361 CGGATCTGGTCAAGTCCACCAAGGGTCAGAGCCTGAAGGAGGAGTGGATCGCCTACATCT 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16973R-1.in silico     361 CGGATCTGGTCAAGTCCACCAAGGGTCAGAGCCTGAAGGAGGAGTGGATCGCCTACATCT 420


16973R-1.IR_full       421 GCCGCGAGATTCTGCGGGGCCTGAGCTACCTGCACTCGAACAAAGTCATCCATCGCGACA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16973R-1.in silico     421 GCCGCGAGATTCTGCGGGGCCTGAGCTACCTGCACTCGAACAAAGTCATCCATCGCGACA 480


16973R-1.IR_full       481 TCAAGGGGCAGAATGTGCTCC 501
                           |||||||||||||||||||||
16973R-1.in silico     481 TCAAGGGGCAGAATGTGCTCC 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  17  NM_079940.4  CG16973-RA, transcript variant A (msn), mRNA 
100   482  12  NM_206252.2  CG16973-RB, transcript variant B (msn), mRNA 
100   482  10  NM_206249.2  CG16973-RE, transcript variant E (msn), mRNA 
100   482  10  NM_206251.2  CG16973-RD, transcript variant D (msn), mRNA 
100   482  10  NM_206250.2  CG16973-RC, transcript variant C (msn), mRNA 
0.62   12  NM_167666.1  CG14217-RE, transcript variant E (Tao-1), mRNA 
0.62   12  NM_167665.1  CG14217-RD, transcript variant D (Tao-1), mRNA 
0.41   NM_206187.2  CG10036-RB, transcript variant B (otp), mRNA 
0.41   NM_001043098.1  CG10036-RC, transcript variant C (otp), mRNA 
0.41   NM_079075.4  CG10036-RA, transcript variant A (otp), mRNA 
0.41   NM_170536.2  CG2048-RB, transcript variant B (dco), mRNA 
0.41   NM_170535.1  CG2048-RA, transcript variant A (dco), mRNA 
0.41   NM_079863.2  CG2048-RC, transcript variant C (dco), mRNA 
0.41   NM_167331.1  CG2028-RA, transcript variant A (CkIalpha), mRNA 
0.41   NM_167332.1  CG2028-RC, transcript variant C (CkIalpha), mRNA 
0.41   NM_078585.3  CG2028-RB, transcript variant B (CkIalpha), mRNA 
0.2   10  47  NM_168237.1  CG17888-RD, transcript variant D (Pdp1), mRNA 
0.2   10  23  NM_137583.3  CG11228-RA (hpo), mRNA 
0.2   13  NM_167647.2  CG12199-RB, transcript variant B (kek5), mRNA 
0.2   13  NM_133154.2  CG12199-RA, transcript variant A (kek5), mRNA 
0.2   NM_144352.2  CG32025-RA (desert), mRNA 
0   18  60  176  NM_168571.2  CG32133-RA (CG32133), mRNA 
0   12  64  261  NM_167334.1  CG4013-RB, transcript variant B (Smr), mRNA 
0   12  64  261  NM_080536.2  CG4013-RA, transcript variant A (Smr), mRNA 
0   12  64  261  NM_167335.1  CG4013-RC, transcript variant C (Smr), mRNA 
0   42  126  NM_135077.2  CG14023-RA (CG14023), mRNA 
0   30  72  NM_137690.2  CG10543-RA, transcript variant A (CG10543), mRNA 
0   28  62  NM_176241.1  CG10543-RC, transcript variant C (CG10543), mRNA 
0   28  61  NM_166416.1  CG10543-RB, transcript variant B (CG10543), mRNA 
0   26  80  NM_206286.1  CG10107-RC, transcript variant C (CG10107), mRNA 

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