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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 16889R-1 
 Symbol adat  Full Name adat 
 CG No CG16889  Old CG No CG16889 
 Synonyms dADAT1, BG:DS00941.2, CG16889, Adat, adat 
 Accession No (Link to NCBI) NM_135832.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgAGGAAAGCCCACAGCCAATCA 
 Primer Seq. 3'
aatctagaggtaccCACTGCAGGACATGGATAGAG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 AGGAAAGCCC ACAGCCAATC AATGGACAAT TTTGGCGGGA ATCGTGGAGT TCAACCGGAA 
0061 CACGGAAGCA TGTCAACTAG TTTCGCTTGG ATGCGGAACA AAGTGCATTG GAGAATCAAA 
0121 ACTTTGTCCC AATGGCCTCA TCCTGAATGA TTCCCATGCC GAGGTGCTGG CACGTCGTGG 
0181 ATTTCTTCGC TTTCTATACC AGGAGCTCAA GCAGGATAGA ATCTTTCATT GGAACAGCAC 
0241 GCTAAGTACG TACGACATGG ATGAGCACGT GGAGTTCCAC TTTCTGAGCA CACAAACGCC 
0301 TTGTGGGGAT GCCTGCATCC TTGAGGAAGA GCAANCCAGC GGCGCGGGCC ANNCGCCAGC 
0361 GGCTGGATGA GGATTCCGAG ATGGTCTATA CGGGTGCCAA ACTAATAAGT GACCTTAGCG 
0421 ATGATCCAAT GTTgNAGACG CCAGGAgNTC TGCGAACGAA GCCCGGACGT GGAGAGCGCA 
0481 CTCTATCCAT GTCCTGCAGT G 
 in silico PCR Fragment
0001 AGGAAAGCCC ACAGCCAATC AATGGACAAT TTTGGCGGGA ATCGTGGAGT TCAACCGGAA 
0061 CACGGAAGCA TGTCAACTAG TTTCGCTTGG ATGCGGAACA AAGTGCATTG GAGAATCCAA 
0121 ACTTTGTCCC AATGGCCTCA TCCTGAATGA TTCCCATGCC GAGGTGCTGG CACGTCGTGG 
0181 ATTTCTTCGC TTTCTATACC AGGAGCTCAA GCAGGATAGA ATCTTTCATT GGAACAGCAC 
0241 GCTAAGTACG TACGACATGG ATGAGCACGT GGAGTTCCAC TTTCTGAGCA CACAAACGCC 
0301 TTGTGGGGAT GCCTGCATCC TTGAGGAAGA GCAA-CCAGC GGCGCGGGCC AAACGCCAGC 
0361 GGCTGGATGA GGATTCCGAG ATGGTCTATA CGGGTGCCAA ACTAATAAGT GACCTTAGCG 
0421 ATGATCCAAT GTTGCAGACG CCAGGAGCTC TGCGAACGAA GCCCGGACGT GGAGAGCGCA 
0481 CTCTATCCAT GTCCTGCAGT G 
 Assemble Data

16889R-1.IR_full       1   AGGAAAGCCCACAGCCAATCAATGGACAATTTTGGCGGGAATCGTGGAGTTCAACCGGAA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16889R-1.in silico     1   AGGAAAGCCCACAGCCAATCAATGGACAATTTTGGCGGGAATCGTGGAGTTCAACCGGAA 60


16889R-1.IR_full       61  CACGGAAGCATGTCAACTAGTTTCGCTTGGATGCGGAACAAAGTGCATTGGAGAATCAAA 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
16889R-1.in silico     61  CACGGAAGCATGTCAACTAGTTTCGCTTGGATGCGGAACAAAGTGCATTGGAGAATCCAA 120


16889R-1.IR_full       121 ACTTTGTCCCAATGGCCTCATCCTGAATGATTCCCATGCCGAGGTGCTGGCACGTCGTGG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16889R-1.in silico     121 ACTTTGTCCCAATGGCCTCATCCTGAATGATTCCCATGCCGAGGTGCTGGCACGTCGTGG 180


16889R-1.IR_full       181 ATTTCTTCGCTTTCTATACCAGGAGCTCAAGCAGGATAGAATCTTTCATTGGAACAGCAC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16889R-1.in silico     181 ATTTCTTCGCTTTCTATACCAGGAGCTCAAGCAGGATAGAATCTTTCATTGGAACAGCAC 240


16889R-1.IR_full       241 GCTAAGTACGTACGACATGGATGAGCACGTGGAGTTCCACTTTCTGAGCACACAAACGCC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16889R-1.in silico     241 GCTAAGTACGTACGACATGGATGAGCACGTGGAGTTCCACTTTCTGAGCACACAAACGCC 300


16889R-1.IR_full       301 TTGTGGGGATGCCTGCATCCTTGAGGAAGAGCAANCCAGCGGCGCGGGCCANNCGCCAGC 360
                           |||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||
16889R-1.in silico     301 TTGTGGGGATGCCTGCATCCTTGAGGAAGAGCAA-CCAGCGGCGCGGGCCAAACGCCAGC 360


16889R-1.IR_full       361 GGCTGGATGAGGATTCCGAGATGGTCTATACGGGTGCCAAACTAATAAGTGACCTTAGCG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16889R-1.in silico     361 GGCTGGATGAGGATTCCGAGATGGTCTATACGGGTGCCAAACTAATAAGTGACCTTAGCG 420


16889R-1.IR_full       421 ATGATCCAATGTTGNAGACGCCAGGAGNTCTGCGAACGAAGCCCGGACGTGGAGAGCGCA 480
                           |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
16889R-1.in silico     421 ATGATCCAATGTTGCAGACGCCAGGAGCTCTGCGAACGAAGCCCGGACGTGGAGAGCGCA 480


16889R-1.IR_full       481 CTCTATCCATGTCCTGCAGTG 501
                           |||||||||||||||||||||
16889R-1.in silico     481 CTCTATCCATGTCCTGCAGTG 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_135832.2  CG16889-RA (adat), mRNA 
0   NM_136974.2  CG12373-RA (mRpL18), mRNA 
0   NM_132962.1  CG8945-RC (CG8945), mRNA 
0   NM_134956.2  CG16712-RA (CG16712), mRNA 
0   NM_057923.2  CG6708-RA (Osbp), mRNA 
0   NM_137558.2  CG11906-RA (CG11906), mRNA 
0   NM_001038732.1  CG12598-RC, transcript variant C (Adar), mRNA 
0   NM_130584.2  CG12598-RA, transcript variant A (Adar), mRNA 
0   NM_166903.1  CG12598-RB, transcript variant B (Adar), mRNA 
0   NM_142370.1  CG5873-RA (CG5873), mRNA 
0   NM_133134.2  CG12359-RA (Ulp1), mRNA 
0   NM_168676.1  CG32165-RA (CG32165), mRNA 
0   NM_168677.1  CG32164-RA (CG32164), mRNA 
0   NM_139425.1  CG5691-RA (CG5691), mRNA 
0   NM_079944.2  CG3715-RA (Shc), mRNA 
0   NM_143560.1  CG15541-RA (CG15541), mRNA 
0   NM_139875.3  CG7546-RA, transcript variant A (CG7546), mRNA 
0   NM_168217.2  CG7546-RB, transcript variant B (CG7546), mRNA 
0   NM_169435.1  CG6946-RC, transcript variant C (glo), mRNA 
0   NM_141863.1  CG6946-RA, transcript variant A (glo), mRNA 
0   NM_169434.1  CG6946-RB, transcript variant B (glo), mRNA 
0   NM_135228.1  CG11321-RA, transcript variant A (CG11321), mRNA 
0   NM_164709.1  CG11321-RB, transcript variant B (CG11321), mRNA 
0   NM_144065.1  CG12589-RA (CG12589), mRNA 
0   NM_001014571.1  CG33556-RA (form3), mRNA 
0   NM_166470.1  CG9865-RB, transcript variant B (CG9865), mRNA 
0   NM_137756.2  CG9865-RA, transcript variant A (CG9865), mRNA 
0   NM_134487.2  CG14222-RA (CG14222), mRNA 
0   NM_078645.2  CG4252-RA (mei-41), mRNA 
0   NM_141462.2  CG1149-RA (MstProx), mRNA 

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