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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 16879R-1 
 Symbol CG16879  Full Name CG16879 
 CG No CG16879  Old CG No CG16879 
 Synonyms DS01759.1, BG:DS01759.1, CG16879 
 Accession No (Link to NCBI) NM_135857.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGCACTCGAATGGCAGTGGCAA 
 Primer Seq. 3'
aatctagaggtaccGGTCCACATCAGCGGGATTAT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GCACATCGAA TGGCAGTGGC AAGCCTCGTA CAGACCAGTC TGCGTCACCT AACCCACAGT 
0061 CCTCGGCGAT GACTGCCTCG TCGGAGGGTT GGAGCAGCAA AAGGAAGCTC TATGCCATCG 
0121 ATGAGCGCGA GGAGAGCTCG CCAGTGACTG TGGGCAAGGT GGAGACTGAT TTGGCCTACG 
0181 ATGCGGATGT GGACGAGCTG GAACAgCCGA CGGCCGAGCG CGAGATCATC TACGAGCTGT 
0241 TCCAGCCGTG GGCCCTCAGC ACATATGGCG ATCAGGCCAA GACCAAGACG ATAACATTGC 
0301 GCAAGAAGGC GCGAATTCTT AAAGCCCTCG AGGGCAAGGA GCACAGTCGT CCCGATAGCT 
0361 CCAAGTTCCG CTTTTGGGTC AAGACAAAGG GCTTCACTAC TAATCGACCC GAGGGCTTTG 
0421 AAGAGGCACC AGGCAGTCGG CGCCACTTGA AAAATCTTCC TAGCTCGGCC ATTTTGTCGG 
0481 ATAATCCCGC TGATGTGGAC C 
 in silico PCR Fragment
0001 GCAC-TCGAA TGGCAGTGGC AAGCCTCGTA CAGACCAGTC TGCGTCACCT AACCCACAGT 
0061 CCTCGGCGAT GACTGCCTCG TCGGAGGGTT GGAGCAGCAA AAGGAAGCTC TATGCCATCG 
0121 ATGAGCGCGA GGAGAGCTCG CCAGTGACTG TGGGCAAGGT GGAGACTGAT TTGGCCTACG 
0181 ATGCGGATGT GGACGAGCTG GAACAGCCGA CGGCCGAGCG CGAGATCATC TACGAGCTGT 
0241 TCCAGCCGTG GGCCCTCAGC ACATATGGCG ATCAGGCCAA GACCAAGACG ATAACATTGC 
0301 GCAAGAAGGC GCGAATTCTT AAAGCCCTCG AGGGCAAGGA GCACAGTCGT CCCGATAGCT 
0361 CCAAGTTCCG CTTTTGGGTC AAGACAAAGG GCTTCACTAC TAATCGACCC GAGGGCTTTG 
0421 AAGAGGCACC AGGCAGTCGG CGCCACCTGA AAAATCTTCC TAGCTCGGCC ATTTTGTCGG 
0481 ATAATCCCGC TGATGTGGAC C 
 Assemble Data

16879R-1.IR_full       1   GCACATCGAATGGCAGTGGCAAGCCTCGTACAGACCAGTCTGCGTCACCTAACCCACAGT 60
                           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
16879R-1.in silico     1   GCAC-TCGAATGGCAGTGGCAAGCCTCGTACAGACCAGTCTGCGTCACCTAACCCACAGT 60


16879R-1.IR_full       61  CCTCGGCGATGACTGCCTCGTCGGAGGGTTGGAGCAGCAAAAGGAAGCTCTATGCCATCG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16879R-1.in silico     61  CCTCGGCGATGACTGCCTCGTCGGAGGGTTGGAGCAGCAAAAGGAAGCTCTATGCCATCG 120


16879R-1.IR_full       121 ATGAGCGCGAGGAGAGCTCGCCAGTGACTGTGGGCAAGGTGGAGACTGATTTGGCCTACG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16879R-1.in silico     121 ATGAGCGCGAGGAGAGCTCGCCAGTGACTGTGGGCAAGGTGGAGACTGATTTGGCCTACG 180


16879R-1.IR_full       181 ATGCGGATGTGGACGAGCTGGAACAGCCGACGGCCGAGCGCGAGATCATCTACGAGCTGT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16879R-1.in silico     181 ATGCGGATGTGGACGAGCTGGAACAGCCGACGGCCGAGCGCGAGATCATCTACGAGCTGT 240


16879R-1.IR_full       241 TCCAGCCGTGGGCCCTCAGCACATATGGCGATCAGGCCAAGACCAAGACGATAACATTGC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16879R-1.in silico     241 TCCAGCCGTGGGCCCTCAGCACATATGGCGATCAGGCCAAGACCAAGACGATAACATTGC 300


16879R-1.IR_full       301 GCAAGAAGGCGCGAATTCTTAAAGCCCTCGAGGGCAAGGAGCACAGTCGTCCCGATAGCT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16879R-1.in silico     301 GCAAGAAGGCGCGAATTCTTAAAGCCCTCGAGGGCAAGGAGCACAGTCGTCCCGATAGCT 360


16879R-1.IR_full       361 CCAAGTTCCGCTTTTGGGTCAAGACAAAGGGCTTCACTACTAATCGACCCGAGGGCTTTG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16879R-1.in silico     361 CCAAGTTCCGCTTTTGGGTCAAGACAAAGGGCTTCACTACTAATCGACCCGAGGGCTTTG 420


16879R-1.IR_full       421 AAGAGGCACCAGGCAGTCGGCGCCACTTGAAAAATCTTCCTAGCTCGGCCATTTTGTCGG 480
                           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
16879R-1.in silico     421 AAGAGGCACCAGGCAGTCGGCGCCACCTGAAAAATCTTCCTAGCTCGGCCATTTTGTCGG 480


16879R-1.IR_full       481 ATAATCCCGCTGATGTGGACC 501
                           |||||||||||||||||||||
16879R-1.in silico     481 ATAATCCCGCTGATGTGGACC 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_135857.1  CG16879-RA (CG16879), mRNA 
0   NM_168244.1  CG32368-RA (CG32368), mRNA 
0   NM_137530.1  CG15080-RA (CG15080), mRNA 
0   NM_168546.1  CG10732-RA, transcript variant A (CG10732), mRNA 
0   NM_137247.1  CG8434-RA (lbk), mRNA 
0   10  NM_001014722.1  CG12212-RB, transcript variant B (peb), mRNA 
0   10  NM_057326.4  CG12212-RA, transcript variant A (peb), mRNA 
0   NM_166215.1  CG8946-RB, transcript variant B (Sply), mRNA 
0   NM_143775.2  CG8946-RA, transcript variant A (Sply), mRNA 
0   NM_142645.2  CG4141-RA, transcript variant A (Pi3K92E), mRNA 
0   NM_169910.1  CG4141-RB, transcript variant B (Pi3K92E), mRNA 
0   NM_136491.1  CG14766-RA (CG14766), mRNA 
0   NM_143471.2  CG7789-RA (CG7789), mRNA 
0   NM_080111.2  CG2684-RA (lds), mRNA 
0   NM_136198.2  CG2608-RA (CG2608), mRNA 
0   NM_141649.1  CG9388-RA (AP-47), mRNA 
0   NM_136872.2  CG8290-RB, transcript variant B (CG8290), mRNA 
0   NM_137709.2  CG9418-RA (CG9418), mRNA 
0   NM_141724.2  CG6217-RA (knk), mRNA 
0   NM_143705.2  CG12225-RA (Spt6), mRNA 
0   NM_057276.3  CG4178-RA (Lsp1beta), mRNA 
0   NM_135412.1  CG9487-RA (CG9487), mRNA 
0   NM_136773.1  CG12343-RA (CG12343), mRNA 
0   NM_167610.3  CG5659-RB, transcript variant B (ari-1), mRNA 
0   NM_206777.1  CG5659-RC, transcript variant C (ari-1), mRNA 
0   NM_078675.3  CG5659-RA, transcript variant A (ari-1), mRNA 
0   NM_140525.2  CG12304-RA, transcript variant A (CG12304), mRNA 
0   NM_135236.2  CG10806-RB, transcript variant B (CG10806), mRNA 
0   NM_164717.1  CG10806-RA, transcript variant A (CG10806), mRNA 
0   NM_206375.1  CG12304-RB, transcript variant B (CG12304), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
DC
DM
+- 
VM
 
VB
 
Caspase-3 signal
N
DB
DC
DM
VM
 
VB
 
Dcompartment   Penetrance
     

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