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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
16879R-1 |
Symbol |
CG16879 |
Full Name |
CG16879 |
CG No |
CG16879 |
Old CG No |
CG16879 |
Synonyms |
DS01759.1, BG:DS01759.1, CG16879 |
Accession No (Link to NCBI) |
NM_135857.1 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
Map Viewer |
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Reference
[Please submit your publication]
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Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGCACTCGAATGGCAGTGGCAA |
Primer Seq. 3' |
aatctagaggtaccGGTCCACATCAGCGGGATTAT |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 GCACATCGAA TGGCAGTGGC AAGCCTCGTA CAGACCAGTC TGCGTCACCT AACCCACAGT
0061 CCTCGGCGAT GACTGCCTCG TCGGAGGGTT GGAGCAGCAA AAGGAAGCTC TATGCCATCG
0121 ATGAGCGCGA GGAGAGCTCG CCAGTGACTG TGGGCAAGGT GGAGACTGAT TTGGCCTACG
0181 ATGCGGATGT GGACGAGCTG GAACAgCCGA CGGCCGAGCG CGAGATCATC TACGAGCTGT
0241 TCCAGCCGTG GGCCCTCAGC ACATATGGCG ATCAGGCCAA GACCAAGACG ATAACATTGC
0301 GCAAGAAGGC GCGAATTCTT AAAGCCCTCG AGGGCAAGGA GCACAGTCGT CCCGATAGCT
0361 CCAAGTTCCG CTTTTGGGTC AAGACAAAGG GCTTCACTAC TAATCGACCC GAGGGCTTTG
0421 AAGAGGCACC AGGCAGTCGG CGCCACTTGA AAAATCTTCC TAGCTCGGCC ATTTTGTCGG
0481 ATAATCCCGC TGATGTGGAC C |
in silico PCR Fragment |
0001 GCAC-TCGAA TGGCAGTGGC AAGCCTCGTA CAGACCAGTC TGCGTCACCT AACCCACAGT
0061 CCTCGGCGAT GACTGCCTCG TCGGAGGGTT GGAGCAGCAA AAGGAAGCTC TATGCCATCG
0121 ATGAGCGCGA GGAGAGCTCG CCAGTGACTG TGGGCAAGGT GGAGACTGAT TTGGCCTACG
0181 ATGCGGATGT GGACGAGCTG GAACAGCCGA CGGCCGAGCG CGAGATCATC TACGAGCTGT
0241 TCCAGCCGTG GGCCCTCAGC ACATATGGCG ATCAGGCCAA GACCAAGACG ATAACATTGC
0301 GCAAGAAGGC GCGAATTCTT AAAGCCCTCG AGGGCAAGGA GCACAGTCGT CCCGATAGCT
0361 CCAAGTTCCG CTTTTGGGTC AAGACAAAGG GCTTCACTAC TAATCGACCC GAGGGCTTTG
0421 AAGAGGCACC AGGCAGTCGG CGCCACCTGA AAAATCTTCC TAGCTCGGCC ATTTTGTCGG
0481 ATAATCCCGC TGATGTGGAC C |
Assemble Data |
16879R-1.IR_full 1 GCACATCGAATGGCAGTGGCAAGCCTCGTACAGACCAGTCTGCGTCACCTAACCCACAGT 60
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16879R-1.in silico 1 GCAC-TCGAATGGCAGTGGCAAGCCTCGTACAGACCAGTCTGCGTCACCTAACCCACAGT 60
16879R-1.IR_full 61 CCTCGGCGATGACTGCCTCGTCGGAGGGTTGGAGCAGCAAAAGGAAGCTCTATGCCATCG 120
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16879R-1.in silico 61 CCTCGGCGATGACTGCCTCGTCGGAGGGTTGGAGCAGCAAAAGGAAGCTCTATGCCATCG 120
16879R-1.IR_full 121 ATGAGCGCGAGGAGAGCTCGCCAGTGACTGTGGGCAAGGTGGAGACTGATTTGGCCTACG 180
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16879R-1.in silico 121 ATGAGCGCGAGGAGAGCTCGCCAGTGACTGTGGGCAAGGTGGAGACTGATTTGGCCTACG 180
16879R-1.IR_full 181 ATGCGGATGTGGACGAGCTGGAACAGCCGACGGCCGAGCGCGAGATCATCTACGAGCTGT 240
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16879R-1.in silico 181 ATGCGGATGTGGACGAGCTGGAACAGCCGACGGCCGAGCGCGAGATCATCTACGAGCTGT 240
16879R-1.IR_full 241 TCCAGCCGTGGGCCCTCAGCACATATGGCGATCAGGCCAAGACCAAGACGATAACATTGC 300
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16879R-1.in silico 241 TCCAGCCGTGGGCCCTCAGCACATATGGCGATCAGGCCAAGACCAAGACGATAACATTGC 300
16879R-1.IR_full 301 GCAAGAAGGCGCGAATTCTTAAAGCCCTCGAGGGCAAGGAGCACAGTCGTCCCGATAGCT 360
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16879R-1.in silico 301 GCAAGAAGGCGCGAATTCTTAAAGCCCTCGAGGGCAAGGAGCACAGTCGTCCCGATAGCT 360
16879R-1.IR_full 361 CCAAGTTCCGCTTTTGGGTCAAGACAAAGGGCTTCACTACTAATCGACCCGAGGGCTTTG 420
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16879R-1.in silico 361 CCAAGTTCCGCTTTTGGGTCAAGACAAAGGGCTTCACTACTAATCGACCCGAGGGCTTTG 420
16879R-1.IR_full 421 AAGAGGCACCAGGCAGTCGGCGCCACTTGAAAAATCTTCCTAGCTCGGCCATTTTGTCGG 480
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16879R-1.in silico 421 AAGAGGCACCAGGCAGTCGGCGCCACCTGAAAAATCTTCCTAGCTCGGCCATTTTGTCGG 480
16879R-1.IR_full 481 ATAATCCCGCTGATGTGGACC 501
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16879R-1.in silico 481 ATAATCCCGCTGATGTGGACC 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
1 |
NM_135857.1 |
CG16879-RA (CG16879), mRNA |
0 |
0 |
4 |
3 |
2 |
NM_168244.1 |
CG32368-RA (CG32368), mRNA |
0 |
0 |
3 |
2 |
5 |
NM_137530.1 |
CG15080-RA (CG15080), mRNA |
0 |
0 |
2 |
8 |
5 |
NM_168546.1 |
CG10732-RA, transcript variant A (CG10732), mRNA |
0 |
0 |
2 |
7 |
3 |
NM_137247.1 |
CG8434-RA (lbk), mRNA |
0 |
0 |
2 |
3 |
10 |
NM_001014722.1 |
CG12212-RB, transcript variant B (peb), mRNA |
0 |
0 |
2 |
3 |
10 |
NM_057326.4 |
CG12212-RA, transcript variant A (peb), mRNA |
0 |
0 |
2 |
3 |
6 |
NM_166215.1 |
CG8946-RB, transcript variant B (Sply), mRNA |
0 |
0 |
2 |
3 |
6 |
NM_143775.2 |
CG8946-RA, transcript variant A (Sply), mRNA |
0 |
0 |
2 |
3 |
5 |
NM_142645.2 |
CG4141-RA, transcript variant A (Pi3K92E), mRNA |
0 |
0 |
2 |
3 |
5 |
NM_169910.1 |
CG4141-RB, transcript variant B (Pi3K92E), mRNA |
0 |
0 |
2 |
3 |
3 |
NM_136491.1 |
CG14766-RA (CG14766), mRNA |
0 |
0 |
2 |
2 |
4 |
NM_143471.2 |
CG7789-RA (CG7789), mRNA |
0 |
0 |
1 |
5 |
5 |
NM_080111.2 |
CG2684-RA (lds), mRNA |
0 |
0 |
1 |
4 |
5 |
NM_136198.2 |
CG2608-RA (CG2608), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_141649.1 |
CG9388-RA (AP-47), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_136872.2 |
CG8290-RB, transcript variant B (CG8290), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_137709.2 |
CG9418-RA (CG9418), mRNA |
0 |
0 |
1 |
3 |
9 |
NM_141724.2 |
CG6217-RA (knk), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_143705.2 |
CG12225-RA (Spt6), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_057276.3 |
CG4178-RA (Lsp1beta), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_135412.1 |
CG9487-RA (CG9487), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_136773.1 |
CG12343-RA (CG12343), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_167610.3 |
CG5659-RB, transcript variant B (ari-1), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_206777.1 |
CG5659-RC, transcript variant C (ari-1), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_078675.3 |
CG5659-RA, transcript variant A (ari-1), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_140525.2 |
CG12304-RA, transcript variant A (CG12304), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_135236.2 |
CG10806-RB, transcript variant B (CG10806), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_164717.1 |
CG10806-RA, transcript variant A (CG10806), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_206375.1 |
CG12304-RB, transcript variant B (CG12304), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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