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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 16777R-3 
 Symbol CG16777  Full Name CG16777 
 CG No CG16777  Old CG No CG16777 
 Synonyms CG16777 
 Accession No (Link to NCBI) NM_141636.1 
 Inserted Chr. lll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATTATGAAGGTGGCCATGGAC 
 Primer Seq. 3'
aatctagaggtaccAGGGGCGATAGATCCATCTGA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ATTATGAAGG TGGCCATGGA CAAGGCGGCC GAGCAGCTGA TTCAGCAATT TGGTTTTGAT 
0061 TACTTGCAGC AGCAGCTGCA GTTGCAACAT CAGAACCAAC ACAACAGCAG CCCACAGCAG 
0121 CCACAGCACC AGCAACTAGA ACCAGAAAAC GAACATCTCA CATACCAATA TCAGCAATCA 
0181 AAGCCCACAC ATATGCAGCA ATTAGCTTGT AACTATCAGC CACGACATTC CACAACCACG 
0241 TCGTCGCCCT CATCCACACA TTCGCTGGCC AGCGGCGGCG GCAGCAGCAG TAACAGCAGC 
0301 AACAGCAGCA GCAGCGACAG CAGCAGCAAT CAACATAAGC CACATCAGCA ACATAAGCAA 
0361 CATCAGCAAC ATCGGCAACA TCAGCAACAG CAATCATAGC AACGCTGCAT ACTCATTAGC 
0421 CGTTCATAGC TATCAAAAGC AAATAGAAAG CCCGGCTAAT CCCAGTCATG TTCCGCATCA 
0481 TCAGATGGAT CTATCGCCCC T 
 in silico PCR Fragment
0001 ATTATGAAGG TGGCCATGGA CAAGGCGGCC GAGCAGCTGA TTCAGCAATT TGGTTTTGAT 
0061 TACTTGCAGC AGCAGCTGCA GTTGCAACAT CAGAACCAAC ACAACAGCAG CCCACAGCAG 
0121 CCACAGCACC AGCAACTAGA ACCAGAAAAC GAACATCTCA CATACCAATA TCAGCAATCA 
0181 AAGCCCACAC ATATGCAGCA ATTAGCTTGT AACTATCAGC CACGACATTC CACAACCACG 
0241 TCGTCGCCCT CATCCACACA TTCGCTGGCC AGCGGCGGCG GCAGCAGCAG TAACAGCAGC 
0301 AACAGCAGCA GCAGCGACAG CAGCAGC-AT CAACATAAGC CACATCAGCA ACATAAGCAA 
0361 CATCAGCAAC ATCGGCAACA TCAGCAACAG CAATCATAGC AACGCTGCAT ACTCATTAGC 
0421 CGTTCATAGC TATCAAAAGC AAATAGAAAG CCCGGCTAAT CCCAGTCATG TTCCGCATCA 
0481 TCAGATGGAT CTATCGCCCC T 
 Assemble Data

16777R-3.IR_full       1   ATTATGAAGGTGGCCATGGACAAGGCGGCCGAGCAGCTGATTCAGCAATTTGGTTTTGAT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16777R-3.in silico     1   ATTATGAAGGTGGCCATGGACAAGGCGGCCGAGCAGCTGATTCAGCAATTTGGTTTTGAT 60


16777R-3.IR_full       61  TACTTGCAGCAGCAGCTGCAGTTGCAACATCAGAACCAACACAACAGCAGCCCACAGCAG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16777R-3.in silico     61  TACTTGCAGCAGCAGCTGCAGTTGCAACATCAGAACCAACACAACAGCAGCCCACAGCAG 120


16777R-3.IR_full       121 CCACAGCACCAGCAACTAGAACCAGAAAACGAACATCTCACATACCAATATCAGCAATCA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16777R-3.in silico     121 CCACAGCACCAGCAACTAGAACCAGAAAACGAACATCTCACATACCAATATCAGCAATCA 180


16777R-3.IR_full       181 AAGCCCACACATATGCAGCAATTAGCTTGTAACTATCAGCCACGACATTCCACAACCACG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16777R-3.in silico     181 AAGCCCACACATATGCAGCAATTAGCTTGTAACTATCAGCCACGACATTCCACAACCACG 240


16777R-3.IR_full       241 TCGTCGCCCTCATCCACACATTCGCTGGCCAGCGGCGGCGGCAGCAGCAGTAACAGCAGC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16777R-3.in silico     241 TCGTCGCCCTCATCCACACATTCGCTGGCCAGCGGCGGCGGCAGCAGCAGTAACAGCAGC 300


16777R-3.IR_full       301 AACAGCAGCAGCAGCGACAGCAGCAGCAATCAACATAAGCCACATCAGCAACATAAGCAA 360
                           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
16777R-3.in silico     301 AACAGCAGCAGCAGCGACAGCAGCAGC-ATCAACATAAGCCACATCAGCAACATAAGCAA 360


16777R-3.IR_full       361 CATCAGCAACATCGGCAACATCAGCAACAGCAATCATAGCAACGCTGCATACTCATTAGC 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16777R-3.in silico     361 CATCAGCAACATCGGCAACATCAGCAACAGCAATCATAGCAACGCTGCATACTCATTAGC 420


16777R-3.IR_full       421 CGTTCATAGCTATCAAAAGCAAATAGAAAGCCCGGCTAATCCCAGTCATGTTCCGCATCA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16777R-3.in silico     421 CGTTCATAGCTATCAAAAGCAAATAGAAAGCCCGGCTAATCCCAGTCATGTTCCGCATCA 480


16777R-3.IR_full       481 TCAGATGGATCTATCGCCCCT 501
                           |||||||||||||||||||||
16777R-3.in silico     481 TCAGATGGATCTATCGCCCCT 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  29  203  426  NM_141636.1  CG16777-RA (CG16777), mRNA 
9.12   44  340  1515  3968  NM_080536.2  CG4013-RA, transcript variant A (Smr), mRNA 
9.12   44  340  1515  3968  NM_167334.1  CG4013-RB, transcript variant B (Smr), mRNA 
9.12   44  340  1515  3968  NM_167335.1  CG4013-RC, transcript variant C (Smr), mRNA 
4.35   21  49  193  518  NM_166446.1  CG9696-RD, transcript variant D (dom), mRNA 
4.35   21  49  193  518  NM_080094.2  CG9696-RA, transcript variant A (dom), mRNA 
2.9   14  91  382  1079  NM_206628.1  CG32767-RB, transcript variant B (CG32767), mRNA 
2.9   14  91  382  1079  NM_131975.3  CG32767-RA, transcript variant A (CG32767), mRNA 
2.9   14  71  390  1185  NM_139493.2  CG2083-RA (CG2083), mRNA 
2.9   14  59  204  509  NM_140155.2  CG7958-RA, transcript variant A (tna), mRNA 
2.9   14  59  204  499  NM_168422.1  CG7958-RB, transcript variant B (tna), mRNA 
2.9   14  55  256  676  NM_079507.2  CG2530-RA (corto), mRNA 
2.9   14  43  218  706  NM_001014574.1  CG7391-RF, transcript variant F (Clk), mRNA 
2.9   14  43  218  706  NM_079240.2  CG7391-RA, transcript variant A (Clk), mRNA 
2.9   14  43  218  706  NM_206299.1  CG7391-RC, transcript variant C (Clk), mRNA 
2.9   14  43  218  706  NM_001014575.1  CG7391-RE, transcript variant E (Clk), mRNA 
2.9   14  43  218  706  NM_170628.1  CG7391-RB, transcript variant B (Clk), mRNA 
2.9   14  43  218  706  NM_001014576.1  CG7391-RD, transcript variant D (Clk), mRNA 
2.9   14  41  242  784  NM_001038742.1  CG6824-RD, transcript variant D (ovo), mRNA 
2.9   14  41  242  782  NM_080338.3  CG6824-RA, transcript variant A (ovo), mRNA 
2.9   14  28  174  610  NM_167026.2  CG6824-RB, transcript variant B (ovo), mRNA 
2.9   14  28  174  603  NM_167027.2  CG6824-RC, transcript variant C (ovo), mRNA 
2.69   13  55  229  513  NM_080487.2  CG10572-RA (Cdk8), mRNA 
2.48   12  88  467  1463  NM_001038734.1  CG16902-RC (Hr4), mRNA 
2.48   12  61  224  775  NM_132403.3  CG17255-RA, transcript variant A (CG17255), mRNA 
2.48   12  61  224  775  NM_167231.3  CG17255-RB, transcript variant B (CG17255), mRNA 
2.48   12  44  198  494  NM_176106.1  CG33141-RA, transcript variant A (sns), mRNA 
2.48   12  44  198  494  NM_001043067.1  CG33141-RB, transcript variant B (sns), mRNA 
2.48   12  44  81  145  NM_078614.3  CG8544-RB, transcript variant B (sd), mRNA 
2.48   12  44  81  145  NM_167465.1  CG8544-RA, transcript variant A (sd), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
++ 
DB
++ 
DC
++ 
DM
VM
+- 
VB
 
Caspase-3 signal
N
++ 
DB
DC
DM
++ 
VM
VB
 
Dcompartment   Penetrance
     

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