Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
16742R-3 |
Symbol |
CG16742 |
Full Name |
CG16742 |
CG No |
CG16742 |
Old CG No |
CG16742 |
Synonyms |
CG16742 |
Accession No (Link to NCBI) |
NM_137652.2 |
Inserted Chr. |
ll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
pupal semi-lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Verboon JM, Nakamura M, Davidson KA, Decker JR, Nandakumar V, Parkhurst SM. Drosophila Wash and the Wash regulatory complex function in nuclear envelope budding. J Cell Sci (2020) 133(13)
[
PubMed ID = 32503943
]
[
RRC reference
]
Verboon JM, Decker JR, Nakamura M, Parkhurst SM. Wash exhibits context-dependent phenotypes and, along with the WASH regulatory complex, regulates Drosophila oogenesis. J Cell Sci (2018) 131(8)
[
PubMed ID = 29549166
]
[
RRC reference
]
Yano H, Yamamoto-Hino M, Awano W, Aoki-Kinoshita KF, Tsuda-Sakurai K, Okano H, Goto S. Identification of proteasome components required for apical localization of Chaoptin using functional genomics. J Neurogenet (2012) 26(1) 53-63
[
PubMed ID = 22417167
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgAAGTATGCCGGGTTGTATGAC |
Primer Seq. 3' |
aatctagaggtaccATCTCAGCCTCCTTCGGAGTT |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 AAGTATGCCG GGTTGTATGA CAGTAAGGAG AATAGTGAAG ATGACAGATC CGAGGAATTC
0061 TCCTCAAGCT CATCGGACGA GAAGGAACCC GAGACCAAAA AAATAGCAAC GCCAGCGAAC
0121 AAATTAGAAG AACAGCATCT GTCTGACTCC TCTTCCCTAG CCTCGTTTGC CAGGGAACCG
0181 GCAATCGTGT CGCCAGTCAT TAACCCTGCT GTTCAGGTAG CAGAGCCTGT CATCAGAACA
0241 CAACCGCGTC CAATTATAAG CAGTCAAAGG AATCCACATG AGAGGGACAT GTTTGCTGCA
0301 CTCCGGCAAT CGCCGCCTAG CGACGACCCG CCATCCACAT CGTCATCGCC TACATCTTCA
0361 CCAGCCTTTA GGAATCCATC AAGTCGCCTT CCAATCGTAT CTACTGCATC GCTTTAGTTC
0421 CAGTAGCAGT AGTCCTGCCC AACAACCTCC TCGACTCTTC GACGAAGCTG TTTCAACCCA
0481 AACTCCGAAG GAGGCNTGAG AT |
in silico PCR Fragment |
0001 AAGTATGCCG GGTTGTATGA CAGTAAGGAG AATAGTGAAG ATGACAGATC CGAGGAATTC
0061 TCCTCAAGCT CATCGGACGA AAAGGAACCC GAGACCAAAA AAATAGCAAC GCCAGCGAAC
0121 AAATTAGAAG AACAGCATCT GTCTGACTCC TCTTCCCTAG CCTCGTTTGC CAGGGAACCG
0181 GCAATCGTGT CGCCAGTCAT TAACCCTGCT GTTCAGGTAG CAGAGCCTGT CATCAGAACA
0241 CAACCGCGTC CAATTATAAA CAGTCAAAGG AATCCACATG AGAGGGACAT GTTTGCTGCC
0301 CTCCGGCAAT CGCCGCCTAG CGACGACCCG CCATCCACAT CGTCATCGCC TACATCTTCA
0361 CCAGCCTTTA GGAATCCATC AAGTCGCCTT CCAATCGTAT CTACTGCATC GC-TTAGTTC
0421 CAGTAGCAGT AGTCCTGCCC AACAACCTCC TCGACTCTTC GACGAAGCTG TTTCAACCCA
0481 AACTCCGAAG GAGGC-TGAG AT |
Assemble Data |
16742R-3.IR_full 1 AAGTATGCCGGGTTGTATGACAGTAAGGAGAATAGTGAAGATGACAGATCCGAGGAATTC 60
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16742R-3.in silico 1 AAGTATGCCGGGTTGTATGACAGTAAGGAGAATAGTGAAGATGACAGATCCGAGGAATTC 60
16742R-3.IR_full 61 TCCTCAAGCTCATCGGACGAGAAGGAACCCGAGACCAAAAAAATAGCAACGCCAGCGAAC 120
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16742R-3.in silico 61 TCCTCAAGCTCATCGGACGAAAAGGAACCCGAGACCAAAAAAATAGCAACGCCAGCGAAC 120
16742R-3.IR_full 121 AAATTAGAAGAACAGCATCTGTCTGACTCCTCTTCCCTAGCCTCGTTTGCCAGGGAACCG 180
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16742R-3.in silico 121 AAATTAGAAGAACAGCATCTGTCTGACTCCTCTTCCCTAGCCTCGTTTGCCAGGGAACCG 180
16742R-3.IR_full 181 GCAATCGTGTCGCCAGTCATTAACCCTGCTGTTCAGGTAGCAGAGCCTGTCATCAGAACA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16742R-3.in silico 181 GCAATCGTGTCGCCAGTCATTAACCCTGCTGTTCAGGTAGCAGAGCCTGTCATCAGAACA 240
16742R-3.IR_full 241 CAACCGCGTCCAATTATAAGCAGTCAAAGGAATCCACATGAGAGGGACATGTTTGCTGCA 300
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
16742R-3.in silico 241 CAACCGCGTCCAATTATAAACAGTCAAAGGAATCCACATGAGAGGGACATGTTTGCTGCC 300
16742R-3.IR_full 301 CTCCGGCAATCGCCGCCTAGCGACGACCCGCCATCCACATCGTCATCGCCTACATCTTCA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16742R-3.in silico 301 CTCCGGCAATCGCCGCCTAGCGACGACCCGCCATCCACATCGTCATCGCCTACATCTTCA 360
16742R-3.IR_full 361 CCAGCCTTTAGGAATCCATCAAGTCGCCTTCCAATCGTATCTACTGCATCGCTTTAGTTC 420
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16742R-3.in silico 361 CCAGCCTTTAGGAATCCATCAAGTCGCCTTCCAATCGTATCTACTGCATCGC-TTAGTTC 420
16742R-3.IR_full 421 CAGTAGCAGTAGTCCTGCCCAACAACCTCCTCGACTCTTCGACGAAGCTGTTTCAACCCA 480
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16742R-3.in silico 421 CAGTAGCAGTAGTCCTGCCCAACAACCTCCTCGACTCTTCGACGAAGCTGTTTCAACCCA 480
16742R-3.IR_full 481 AACTCCGAAGGAGGCNTGAGAT 502
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16742R-3.in silico 481 AACTCCGAAGGAGGC-TGAGAT 502
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_137652.2 |
CG16742-RA, transcript variant A (CG16742), mRNA |
0 |
0 |
4 |
5 |
5 |
NM_143018.2 |
CG5794-RD, transcript variant D (CG5794), mRNA |
0 |
0 |
4 |
5 |
5 |
NM_170158.1 |
CG5794-RB, transcript variant B (CG5794), mRNA |
0 |
0 |
4 |
5 |
3 |
NM_206564.1 |
CG5794-RE, transcript variant E (CG5794), mRNA |
0 |
0 |
3 |
3 |
5 |
NM_079858.3 |
CG12070-RA, transcript variant A (Sap-r), mRNA |
0 |
0 |
3 |
3 |
5 |
NM_170529.2 |
CG12070-RB, transcript variant B (Sap-r), mRNA |
0 |
0 |
2 |
3 |
2 |
NM_142374.2 |
CG5823-RA (CG5823), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_130536.1 |
CG14625-RB (CG14625), mRNA |
0 |
0 |
1 |
5 |
4 |
NM_143637.3 |
CG1937-RA (sip3), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_168210.1 |
CG8582-RA, transcript variant A (Sh3beta), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_139855.2 |
CG8582-RB, transcript variant B (Sh3beta), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_140709.1 |
CG13724-RA (CG13724), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_078794.2 |
CG9564-RA (Try29F), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_165738.1 |
CG2269-RC, transcript variant C (CG2269), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_136709.2 |
CG2269-RA, transcript variant A (CG2269), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_165737.1 |
CG2269-RB, transcript variant B (CG2269), mRNA |
0 |
0 |
0 |
5 |
10 |
NM_140223.1 |
CG14137-RA (CG14137), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_079979.2 |
CG18497-RB, transcript variant B (spen), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_164374.1 |
CG18497-RA, transcript variant A (spen), mRNA |
0 |
0 |
0 |
4 |
7 |
NM_164375.1 |
CG18497-RC, transcript variant C (spen), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_079290.2 |
CG6721-RA, transcript variant A (Gap1), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_168382.1 |
CG6721-RB, transcript variant B (Gap1), mRNA |
0 |
0 |
0 |
4 |
4 |
NM_168099.1 |
CG32234-RA (CG32234), mRNA |
0 |
0 |
0 |
3 |
9 |
NM_176460.1 |
CG31374-RC, transcript variant C (CG31374), mRNA |
0 |
0 |
0 |
3 |
9 |
NM_169390.2 |
CG31374-RB, transcript variant B (CG31374), mRNA |
0 |
0 |
0 |
3 |
8 |
NM_080258.2 |
CG10229-RA (katanin-60), mRNA |
0 |
0 |
0 |
3 |
8 |
NM_169391.1 |
CG31374-RA, transcript variant A (CG31374), mRNA |
0 |
0 |
0 |
3 |
6 |
NM_135604.2 |
CG12299-RA (CG12299), mRNA |
0 |
0 |
0 |
3 |
5 |
NM_057490.3 |
CG6702-RA (Cbp53E), mRNA |
0 |
0 |
0 |
3 |
3 |
NM_176700.1 |
CG3035-RA (cm), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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+ |
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DB |
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+ |
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DC |
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++ |
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DM |
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+ |
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VM |
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VB |
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