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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 16734R-2 
 Symbol CG16734  Full Name CG16734 
 CG No CG16734  Old CG No CG16734 
 Synonyms CG16734 
 Accession No (Link to NCBI) NM_141615.1 
 Inserted Chr. lll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCTAGATGCTTTCACGTGGAAC 
 Primer Seq. 3'
aatctagaggtaccCTAAAGACTTCGATGAACCGC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CTAGTATGCT TTCACGTGGA ACCAATGCGA CGACATGCTG GAACGCCTCA TTCAGAACGT 
0061 GACAATGGCC TCCAGCCCAA AAGTTTTAAT CTGCCTGCTG CAGTATATCA TCCGATTAGG 
0121 ATACTACTTC ACCATCAATC GCAGCGATGT GGAAACTGCT TTGGCCATGG ATATATGCGA 
0181 ACCAGATAAA TTGGTAGCGT GTCGGGACGT ATGCCTTGCT CTAAATGTTA GCACCAGCTA 
0241 TCGTTGGGCC AAGGCCATCC TACAAATGCT TGTCCTGGAG TCGAGCAAGC TGCTCCAAGG 
0301 TGTCGAGGTA TGCACTGCTT TACTGGATCA ACTGCTAAGA TGCTATCTGG TTTGCATCAT 
0361 GCCTATTCCT CTGCAAGCTT TGCATCCGCA CCTGCCGGAG TTTTACGGGA AGTTTGTGGC 
0421 TGTGTTAATG GAATGTTTGG TGGCCCACGA GAAGGCACCT CCAGTTCTAA AACTCGTTTC 
0481 GCGGTTCATC GAAGTCTTTA G 
 in silico PCR Fragment
0001 CTAG-ATGCT TTCACGTGGA ACCAATGCGA CGACATGCTG GAACGCCTCA TTCAGAACGT 
0061 GACAATGGCC TCCAGCCCAA AAGTTTTAAT CTGCCTGCTG CAGTATATCA TCCGATTAGG 
0121 ATACTACTTC ACCATCAATC GCAGCGATGT GAAAACTGCT TTGGCCATGG ATATATGCGA 
0181 ACCAGATAAA TTGGTAGCGT GTCGGGACGT ATGCCTTGCT CTAAATGTTA GCACCAGCTA 
0241 TCGTTGGGCC AAGGCCATCC TACAAATGCT TGTCCTGGAG TCGAGCAAGC TGCTCCAAGG 
0301 TGTCGAGGTA TGCACTGCTT TACTGGATCA ACTGCTAAGA TGCTATCTGG TTTGCATCAT 
0361 GCCTATTCCT CTGCAAGCTT TGCATCCGCA CCTGCCGGAG TTTTACGGGA AGTTTGTGGC 
0421 TGTGTTAATG GAATGTTTGG TGGCCCACGA GAAGGCACCT CCAGTTCTAA AACTCGTTTC 
0481 GCGGTTCATC GAAGTCTTTA G 
 Assemble Data

16734R-2.IR_full       1   CTAGTATGCTTTCACGTGGAACCAATGCGACGACATGCTGGAACGCCTCATTCAGAACGT 60
                           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
16734R-2.in silico     1   CTAG-ATGCTTTCACGTGGAACCAATGCGACGACATGCTGGAACGCCTCATTCAGAACGT 60


16734R-2.IR_full       61  GACAATGGCCTCCAGCCCAAAAGTTTTAATCTGCCTGCTGCAGTATATCATCCGATTAGG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16734R-2.in silico     61  GACAATGGCCTCCAGCCCAAAAGTTTTAATCTGCCTGCTGCAGTATATCATCCGATTAGG 120


16734R-2.IR_full       121 ATACTACTTCACCATCAATCGCAGCGATGTGGAAACTGCTTTGGCCATGGATATATGCGA 180
                           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
16734R-2.in silico     121 ATACTACTTCACCATCAATCGCAGCGATGTGAAAACTGCTTTGGCCATGGATATATGCGA 180


16734R-2.IR_full       181 ACCAGATAAATTGGTAGCGTGTCGGGACGTATGCCTTGCTCTAAATGTTAGCACCAGCTA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16734R-2.in silico     181 ACCAGATAAATTGGTAGCGTGTCGGGACGTATGCCTTGCTCTAAATGTTAGCACCAGCTA 240


16734R-2.IR_full       241 TCGTTGGGCCAAGGCCATCCTACAAATGCTTGTCCTGGAGTCGAGCAAGCTGCTCCAAGG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16734R-2.in silico     241 TCGTTGGGCCAAGGCCATCCTACAAATGCTTGTCCTGGAGTCGAGCAAGCTGCTCCAAGG 300


16734R-2.IR_full       301 TGTCGAGGTATGCACTGCTTTACTGGATCAACTGCTAAGATGCTATCTGGTTTGCATCAT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16734R-2.in silico     301 TGTCGAGGTATGCACTGCTTTACTGGATCAACTGCTAAGATGCTATCTGGTTTGCATCAT 360


16734R-2.IR_full       361 GCCTATTCCTCTGCAAGCTTTGCATCCGCACCTGCCGGAGTTTTACGGGAAGTTTGTGGC 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16734R-2.in silico     361 GCCTATTCCTCTGCAAGCTTTGCATCCGCACCTGCCGGAGTTTTACGGGAAGTTTGTGGC 420


16734R-2.IR_full       421 TGTGTTAATGGAATGTTTGGTGGCCCACGAGAAGGCACCTCCAGTTCTAAAACTCGTTTC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16734R-2.in silico     421 TGTGTTAATGGAATGTTTGGTGGCCCACGAGAAGGCACCTCCAGTTCTAAAACTCGTTTC 480


16734R-2.IR_full       481 GCGGTTCATCGAAGTCTTTAG 501
                           |||||||||||||||||||||
16734R-2.in silico     481 GCGGTTCATCGAAGTCTTTAG 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_141615.1  CG16734-RA (CG16734), mRNA 
0   NM_169143.1  CG10272-RD, transcript variant D (gpp), mRNA 
0   NM_141398.1  CG10272-RA, transcript variant A (gpp), mRNA 
0   NM_169142.1  CG10272-RB, transcript variant B (gpp), mRNA 
0   NM_138049.2  CG3328-RA (CG3328), mRNA 
0   NM_170304.1  CG31075-RA (CG31075), mRNA 
0   NM_143571.2  CG15544-RA (CG15544), mRNA 
0   NM_137620.2  CG8908-RB, transcript variant B (CG8908), mRNA 
0   NM_166385.2  CG8908-RA, transcript variant A (CG8908), mRNA 
0   NM_136859.2  CG8991-RA (Sobp), mRNA 
0   NM_132543.1  CG10362-RA (CG10362), mRNA 
0   NM_176232.1  CG15097-RB, transcript variant B (CG15097), mRNA 
0   NM_057280.3  CG8695-RA (LvpL), mRNA 
0   NM_079073.1  CG8595-RA (Toll-7), mRNA 
0   NM_205892.1  CG3539-RC, transcript variant C (Slh), mRNA 
0   NM_205891.1  CG3539-RD, transcript variant D (Slh), mRNA 
0   11  NM_140629.1  CG16807-RA (CG16807), mRNA 
0   NM_134279.2  CG7734-RB, transcript variant B (shn), mRNA 
0   NM_057376.2  CG7734-RC, transcript variant C (shn), mRNA 
0   NM_057375.3  CG7734-RA, transcript variant A (shn), mRNA 
0   NM_206091.1  CG7734-RD, transcript variant D (shn), mRNA 
0   NM_176727.1  CG33174-RD, transcript variant D (CG33174), mRNA 
0   NM_176728.1  CG33174-RA, transcript variant A (CG33174), mRNA 
0   NM_140432.2  CG6833-RA (CG6833), mRNA 
0   NM_079764.2  CG6875-RA (asp), mRNA 
0   NM_166402.1  CG30147-RB, transcript variant B (Hil), mRNA 
0   NM_137649.2  CG30147-RA, transcript variant A (Hil), mRNA 
0   NM_079452.2  CG7395-RA (NPFR76F), mRNA 
0   NM_142988.2  CG5728-RA (CG5728), mRNA 
0   NM_001032402.1  CG33957-RB, transcript variant B (cp309), mRNA 

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