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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 16720R-1 
 Symbol 5-HT1A  Full Name Serotonin receptor 1A 
 CG No CG16720  Old CG No CG16720 
 Synonyms CG16720, 5HT[[1ADro]], Dm5HTdro2A, 5HT-dro2A, 5-HT[[1ADro]], 5-HT-dro2A, DRO2A, 5htdro2a, 5-HT1ADro, 5HT1A, 5HT-drp[[2A]], 5HT-R2A, 5-HT1A, d5-HT1A 
 Accession No (Link to NCBI) NM_057454.3 
 Inserted Chr. lll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Lin HW, Chen CC, Jhang RY, Chen L, de Belle JS, Tully T, Chiang AS.
CREBB repression of protein synthesis in mushroom body gates long-term memory formation in Drosophila.
Proc Natl Acad Sci U S A (2022) 119(50) e2211308119 [ PubMed ID = 36469774 ] [ RRC reference ]

Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTGAATGACAGGGCCTTTCTGA 
 Primer Seq. 3'
aatctagaggtaccACTGGAATCGTTGCCTTCGAG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TGAATGACAG GGCCTTTCTG ATAGCCGAAC CGCATCCCGA ACAGCCGAAT GTAGATGGTC 
0061 AGGACCAGGA CGACGCGGAG CTGGAGGAAC TGGACGACAT GGCGGTCACG GACGATGGAC 
0121 AGCTGGAGGA TACCAATAAC AACAACAACA GCAAGCGCNT ACTACAGCTC CGGTAAAAGA 
0181 CGAGCGGATT TCATAGGCTC CCTGGCGCTG AAGCCACCGC CCACCGATGT GAACACCACC 
0241 ACCACCACCG CCGGCTCACC ACTGGCCACC GCCGCTNTTG GCAGCgGCAG CCGCCAGTGC 
0301 CNTCGGTGGC GGCAGCGGCT GCCAGGATCA CCGCCAAGGC GGCACACAGG GCACTGACCA 
0361 CCAAGCAGGA TGCCACATCC TCGCCAGCAT CCTCTCCAGC CCTCCAACTG ATCGACATGG 
0421 ACAATAACTA CACGAATGTC GCAGTCGGAC TGGGTGCCAT GCNTGCTAAA TGACACGCTC 
0481 CTCCTCGAAG GCAACGATTC CAGT 
 in silico PCR Fragment
0001 TGAATGACAG GGCCTTTCTG ATAGCCGAAC CGCATCCCGA ACAGCCGAAT GTAGATGGTC 
0061 AGGACCAGGA CGACGCGGAG CTGGAGGAAC TGGACGACAT GGCGGTCACG GACGATGGAC 
0121 AGCTGGAGGA TACCAATAAC AACAACAACA GCAAGCGC-T ACTACAGCTC CGGTAAAAGA 
0181 CGAGCGGATT TCATAGGCTC CCTGGCGCTG AAGCCACCGC CCACCGATGT GAACACCACC 
0241 ACCACCACCG CCGGCTCACC ACTGGCCACC GCCGCT-TTG GCAGCGGCAG CCGCCAGTGC 
0301 C-TCGGTGGC GGCAGCGGCT GCCAGGATCA CCGCCAAGGC GGCACACAGG GCACTGACCA 
0361 CCAAGCAGGA TGCCACATCC TCGCCAGCAT CCTCTCCAGC CCTCCAACTG ATCGACATGG 
0421 ACAATAACTA CACGAATGTC GCAGTCGGAC TGGGTGCCAT GC-TGCTAAA TGACACGCTC 
0481 CTCCTCGAAG GCAACGATTC CAGT 
 Assemble Data

16720R-1.IR_full       1   TGAATGACAGGGCCTTTCTGATAGCCGAACCGCATCCCGAACAGCCGAATGTAGATGGTC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16720R-1.in silico     1   TGAATGACAGGGCCTTTCTGATAGCCGAACCGCATCCCGAACAGCCGAATGTAGATGGTC 60


16720R-1.IR_full       61  AGGACCAGGACGACGCGGAGCTGGAGGAACTGGACGACATGGCGGTCACGGACGATGGAC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16720R-1.in silico     61  AGGACCAGGACGACGCGGAGCTGGAGGAACTGGACGACATGGCGGTCACGGACGATGGAC 120


16720R-1.IR_full       121 AGCTGGAGGATACCAATAACAACAACAACAGCAAGCGCNTACTACAGCTCCGGTAAAAGA 180
                           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
16720R-1.in silico     121 AGCTGGAGGATACCAATAACAACAACAACAGCAAGCGC-TACTACAGCTCCGGTAAAAGA 180


16720R-1.IR_full       181 CGAGCGGATTTCATAGGCTCCCTGGCGCTGAAGCCACCGCCCACCGATGTGAACACCACC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16720R-1.in silico     181 CGAGCGGATTTCATAGGCTCCCTGGCGCTGAAGCCACCGCCCACCGATGTGAACACCACC 240


16720R-1.IR_full       241 ACCACCACCGCCGGCTCACCACTGGCCACCGCCGCTNTTGGCAGCGGCAGCCGCCAGTGC 300
                           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
16720R-1.in silico     241 ACCACCACCGCCGGCTCACCACTGGCCACCGCCGCT-TTGGCAGCGGCAGCCGCCAGTGC 300


16720R-1.IR_full       301 CNTCGGTGGCGGCAGCGGCTGCCAGGATCACCGCCAAGGCGGCACACAGGGCACTGACCA 360
                           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16720R-1.in silico     301 C-TCGGTGGCGGCAGCGGCTGCCAGGATCACCGCCAAGGCGGCACACAGGGCACTGACCA 360


16720R-1.IR_full       361 CCAAGCAGGATGCCACATCCTCGCCAGCATCCTCTCCAGCCCTCCAACTGATCGACATGG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16720R-1.in silico     361 CCAAGCAGGATGCCACATCCTCGCCAGCATCCTCTCCAGCCCTCCAACTGATCGACATGG 420


16720R-1.IR_full       421 ACAATAACTACACGAATGTCGCAGTCGGACTGGGTGCCATGCNTGCTAAATGACACGCTC 480
                           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
16720R-1.in silico     421 ACAATAACTACACGAATGTCGCAGTCGGACTGGGTGCCATGC-TGCTAAATGACACGCTC 480


16720R-1.IR_full       481 CTCCTCGAAGGCAACGATTCCAGT 504
                           ||||||||||||||||||||||||
16720R-1.in silico     481 CTCCTCGAAGGCAACGATTCCAGT 504

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  20  NM_166322.1  CG16720-RB, transcript variant B (5-HT1A), mRNA 
100   482  20  NM_057454.3  CG16720-RA, transcript variant A (5-HT1A), mRNA 
0.82   18  27  NM_133114.2  CG32541-RA (CG32541), mRNA 
0.82   38  NM_132457.1  CG11122-RA (CG11122), mRNA 
0.62   15  47  NM_132976.1  CG5172-RA, transcript variant A (CG5172), mRNA 
0.62   13  31  NM_206772.1  CG5172-RB, transcript variant B (CG5172), mRNA 
0.62   14  NM_143359.1  CG14065-RA (CG14065), mRNA 
0.41   11  20  41  NM_137510.2  CG30122-RB (CG30122), mRNA 
0.41   13  NM_167312.1  CG10353-RB, transcript variant B (CG10353), mRNA 
0.41   13  NM_132534.1  CG10353-RA, transcript variant A (CG10353), mRNA 
0.41   16  70  NM_001014630.1  CG33547-RA (Rim), mRNA 
0.41   10  28  NM_132386.2  CG2961-RA (Ipod), mRNA 
0.41   13  35  NM_168421.1  CG32067-RB, transcript variant B (simj), mRNA 
0.41   13  35  NM_140150.2  CG32067-RC, transcript variant C (simj), mRNA 
0.41   13  35  NM_168420.1  CG32067-RA, transcript variant A (simj), mRNA 
0.41   NM_143771.2  CG11546-RA, transcript variant A (kermit), mRNA 
0.41   NM_165590.1  CG11546-RB, transcript variant B (kermit), mRNA 
0.41   NM_165591.1  CG11546-RC, transcript variant C (kermit), mRNA 
0.41   NM_165592.1  CG11546-RD, transcript variant D (kermit), mRNA 
0.41   NM_167620.2  CG32547-RA (CG32547), mRNA 
0.41   20  NM_137247.1  CG8434-RA (lbk), mRNA 
0.41   NM_140016.2  CG5064-RA (Srp68), mRNA 
0.2   12  17  22  NM_165165.1  CG5953-RB, transcript variant B (CG5953), mRNA 
0.2   12  17  22  NM_135952.1  CG5953-RA, transcript variant A (CG5953), mRNA 
0.2   14  17  NM_132209.1  CG2256-RB (CG2256), mRNA 
0.2   11  17  NM_080492.2  CG10328-RA (nonA-l), mRNA 
0.2   17  NM_165965.1  CG3884-RA, transcript variant A (CG3884), mRNA 
0.2   26  NM_057241.2  CG7210-RB, transcript variant B (kel), mRNA 
0.2   26  NM_165242.1  CG7210-RA, transcript variant A (kel), mRNA 
0.2   16  53  NM_142330.1  CG5225-RA (CG5225), mRNA 

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