|
NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
|
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
16720R-1 |
Symbol |
5-HT1A |
Full Name |
Serotonin receptor 1A |
CG No |
CG16720 |
Old CG No |
CG16720 |
Synonyms |
CG16720, 5HT[[1ADro]], Dm5HTdro2A, 5HT-dro2A, 5-HT[[1ADro]], 5-HT-dro2A, DRO2A, 5htdro2a, 5-HT1ADro, 5HT1A, 5HT-drp[[2A]], 5HT-R2A, 5-HT1A, d5-HT1A |
Accession No (Link to NCBI) |
NM_057454.3 |
Inserted Chr. |
lll |
Insertional Mutation |
lethal |
Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
|
Reference
[Please submit your publication]
|
Lin HW, Chen CC, Jhang RY, Chen L, de Belle JS, Tully T, Chiang AS. CREBB repression of protein synthesis in mushroom body gates long-term memory formation in Drosophila. Proc Natl Acad Sci U S A (2022) 119(50) e2211308119
[
PubMed ID = 36469774
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
|
Comment |
|
Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTGAATGACAGGGCCTTTCTGA |
Primer Seq. 3' |
aatctagaggtaccACTGGAATCGTTGCCTTCGAG |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 TGAATGACAG GGCCTTTCTG ATAGCCGAAC CGCATCCCGA ACAGCCGAAT GTAGATGGTC
0061 AGGACCAGGA CGACGCGGAG CTGGAGGAAC TGGACGACAT GGCGGTCACG GACGATGGAC
0121 AGCTGGAGGA TACCAATAAC AACAACAACA GCAAGCGCNT ACTACAGCTC CGGTAAAAGA
0181 CGAGCGGATT TCATAGGCTC CCTGGCGCTG AAGCCACCGC CCACCGATGT GAACACCACC
0241 ACCACCACCG CCGGCTCACC ACTGGCCACC GCCGCTNTTG GCAGCgGCAG CCGCCAGTGC
0301 CNTCGGTGGC GGCAGCGGCT GCCAGGATCA CCGCCAAGGC GGCACACAGG GCACTGACCA
0361 CCAAGCAGGA TGCCACATCC TCGCCAGCAT CCTCTCCAGC CCTCCAACTG ATCGACATGG
0421 ACAATAACTA CACGAATGTC GCAGTCGGAC TGGGTGCCAT GCNTGCTAAA TGACACGCTC
0481 CTCCTCGAAG GCAACGATTC CAGT |
in silico PCR Fragment |
0001 TGAATGACAG GGCCTTTCTG ATAGCCGAAC CGCATCCCGA ACAGCCGAAT GTAGATGGTC
0061 AGGACCAGGA CGACGCGGAG CTGGAGGAAC TGGACGACAT GGCGGTCACG GACGATGGAC
0121 AGCTGGAGGA TACCAATAAC AACAACAACA GCAAGCGC-T ACTACAGCTC CGGTAAAAGA
0181 CGAGCGGATT TCATAGGCTC CCTGGCGCTG AAGCCACCGC CCACCGATGT GAACACCACC
0241 ACCACCACCG CCGGCTCACC ACTGGCCACC GCCGCT-TTG GCAGCGGCAG CCGCCAGTGC
0301 C-TCGGTGGC GGCAGCGGCT GCCAGGATCA CCGCCAAGGC GGCACACAGG GCACTGACCA
0361 CCAAGCAGGA TGCCACATCC TCGCCAGCAT CCTCTCCAGC CCTCCAACTG ATCGACATGG
0421 ACAATAACTA CACGAATGTC GCAGTCGGAC TGGGTGCCAT GC-TGCTAAA TGACACGCTC
0481 CTCCTCGAAG GCAACGATTC CAGT |
Assemble Data |
16720R-1.IR_full 1 TGAATGACAGGGCCTTTCTGATAGCCGAACCGCATCCCGAACAGCCGAATGTAGATGGTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16720R-1.in silico 1 TGAATGACAGGGCCTTTCTGATAGCCGAACCGCATCCCGAACAGCCGAATGTAGATGGTC 60
16720R-1.IR_full 61 AGGACCAGGACGACGCGGAGCTGGAGGAACTGGACGACATGGCGGTCACGGACGATGGAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16720R-1.in silico 61 AGGACCAGGACGACGCGGAGCTGGAGGAACTGGACGACATGGCGGTCACGGACGATGGAC 120
16720R-1.IR_full 121 AGCTGGAGGATACCAATAACAACAACAACAGCAAGCGCNTACTACAGCTCCGGTAAAAGA 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
16720R-1.in silico 121 AGCTGGAGGATACCAATAACAACAACAACAGCAAGCGC-TACTACAGCTCCGGTAAAAGA 180
16720R-1.IR_full 181 CGAGCGGATTTCATAGGCTCCCTGGCGCTGAAGCCACCGCCCACCGATGTGAACACCACC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16720R-1.in silico 181 CGAGCGGATTTCATAGGCTCCCTGGCGCTGAAGCCACCGCCCACCGATGTGAACACCACC 240
16720R-1.IR_full 241 ACCACCACCGCCGGCTCACCACTGGCCACCGCCGCTNTTGGCAGCGGCAGCCGCCAGTGC 300
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
16720R-1.in silico 241 ACCACCACCGCCGGCTCACCACTGGCCACCGCCGCT-TTGGCAGCGGCAGCCGCCAGTGC 300
16720R-1.IR_full 301 CNTCGGTGGCGGCAGCGGCTGCCAGGATCACCGCCAAGGCGGCACACAGGGCACTGACCA 360
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16720R-1.in silico 301 C-TCGGTGGCGGCAGCGGCTGCCAGGATCACCGCCAAGGCGGCACACAGGGCACTGACCA 360
16720R-1.IR_full 361 CCAAGCAGGATGCCACATCCTCGCCAGCATCCTCTCCAGCCCTCCAACTGATCGACATGG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
16720R-1.in silico 361 CCAAGCAGGATGCCACATCCTCGCCAGCATCCTCTCCAGCCCTCCAACTGATCGACATGG 420
16720R-1.IR_full 421 ACAATAACTACACGAATGTCGCAGTCGGACTGGGTGCCATGCNTGCTAAATGACACGCTC 480
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
16720R-1.in silico 421 ACAATAACTACACGAATGTCGCAGTCGGACTGGGTGCCATGC-TGCTAAATGACACGCTC 480
16720R-1.IR_full 481 CTCCTCGAAGGCAACGATTCCAGT 504
||||||||||||||||||||||||
16720R-1.in silico 481 CTCCTCGAAGGCAACGATTCCAGT 504
|
Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
4 |
20 |
NM_166322.1 |
CG16720-RB, transcript variant B (5-HT1A), mRNA |
100 |
482 |
0 |
4 |
20 |
NM_057454.3 |
CG16720-RA, transcript variant A (5-HT1A), mRNA |
0.82 |
4 |
5 |
18 |
27 |
NM_133114.2 |
CG32541-RA (CG32541), mRNA |
0.82 |
4 |
2 |
3 |
38 |
NM_132457.1 |
CG11122-RA (CG11122), mRNA |
0.62 |
3 |
4 |
15 |
47 |
NM_132976.1 |
CG5172-RA, transcript variant A (CG5172), mRNA |
0.62 |
3 |
4 |
13 |
31 |
NM_206772.1 |
CG5172-RB, transcript variant B (CG5172), mRNA |
0.62 |
3 |
3 |
5 |
14 |
NM_143359.1 |
CG14065-RA (CG14065), mRNA |
0.41 |
2 |
11 |
20 |
41 |
NM_137510.2 |
CG30122-RB (CG30122), mRNA |
0.41 |
2 |
9 |
7 |
13 |
NM_167312.1 |
CG10353-RB, transcript variant B (CG10353), mRNA |
0.41 |
2 |
9 |
7 |
13 |
NM_132534.1 |
CG10353-RA, transcript variant A (CG10353), mRNA |
0.41 |
2 |
6 |
16 |
70 |
NM_001014630.1 |
CG33547-RA (Rim), mRNA |
0.41 |
2 |
6 |
10 |
28 |
NM_132386.2 |
CG2961-RA (Ipod), mRNA |
0.41 |
2 |
5 |
13 |
35 |
NM_168421.1 |
CG32067-RB, transcript variant B (simj), mRNA |
0.41 |
2 |
5 |
13 |
35 |
NM_140150.2 |
CG32067-RC, transcript variant C (simj), mRNA |
0.41 |
2 |
5 |
13 |
35 |
NM_168420.1 |
CG32067-RA, transcript variant A (simj), mRNA |
0.41 |
2 |
4 |
3 |
3 |
NM_143771.2 |
CG11546-RA, transcript variant A (kermit), mRNA |
0.41 |
2 |
4 |
3 |
3 |
NM_165590.1 |
CG11546-RB, transcript variant B (kermit), mRNA |
0.41 |
2 |
4 |
3 |
2 |
NM_165591.1 |
CG11546-RC, transcript variant C (kermit), mRNA |
0.41 |
2 |
4 |
3 |
2 |
NM_165592.1 |
CG11546-RD, transcript variant D (kermit), mRNA |
0.41 |
2 |
3 |
5 |
9 |
NM_167620.2 |
CG32547-RA (CG32547), mRNA |
0.41 |
2 |
3 |
4 |
20 |
NM_137247.1 |
CG8434-RA (lbk), mRNA |
0.41 |
2 |
2 |
2 |
6 |
NM_140016.2 |
CG5064-RA (Srp68), mRNA |
0.2 |
1 |
12 |
17 |
22 |
NM_165165.1 |
CG5953-RB, transcript variant B (CG5953), mRNA |
0.2 |
1 |
12 |
17 |
22 |
NM_135952.1 |
CG5953-RA, transcript variant A (CG5953), mRNA |
0.2 |
1 |
9 |
14 |
17 |
NM_132209.1 |
CG2256-RB (CG2256), mRNA |
0.2 |
1 |
7 |
11 |
17 |
NM_080492.2 |
CG10328-RA (nonA-l), mRNA |
0.2 |
1 |
7 |
9 |
17 |
NM_165965.1 |
CG3884-RA, transcript variant A (CG3884), mRNA |
0.2 |
1 |
6 |
4 |
26 |
NM_057241.2 |
CG7210-RB, transcript variant B (kel), mRNA |
0.2 |
1 |
6 |
4 |
26 |
NM_165242.1 |
CG7210-RA, transcript variant A (kel), mRNA |
0.2 |
1 |
5 |
16 |
53 |
NM_142330.1 |
CG5225-RA (CG5225), mRNA |
|
|
|