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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
1616R-3 |
Symbol |
dpa |
Full Name |
disc proliferation abnormal |
CG No |
CG1616 |
Old CG No |
CG1616 |
Synonyms |
Mcm4, MCM4, DmMcm4, 43Ca, DmMCM4, Dpa, l(2)43Ca, CG1616, dpa |
Accession No (Link to NCBI) |
NM_057837.3 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
larval lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Kohzaki H. The function of replication and SCF complex during Drosophila wing development. Front Biosci (Landmark Ed) (2018) 23(12) 2235-2244
[
PubMed ID = 29772558
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgAGGATTGGGTGCGAACATGAG |
Primer Seq. 3' |
aatctagaggtaccCCTGCGGATAGCAGATCAACT |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 AGGATTGGGT GCGAACATGA GCGAGATCGA TCTGAGTTCG CCGCTGAACT ACGGCACCCC
0061 CAGCTCGATG GGGTCCATTC GAACCCCTCG TTCCGGAATT AGAGGCACTC CGCTGCGGGC
0121 GCGGCCCGAT AATAAGAACG GACAAGCGCA TCCGCCAGGT GGCCATCGGT GGGGGCTCTG
0181 GGCTCGAACC AATTCCTGAG AAGGGCTCTG AAACCACCGA TCCTGTATCG GAATCTTCGC
0241 AAGCACCTCA GCTCGTCGTC TGGGGAACCA ATGTTGTTGT CAGCCAGTGC AAATCCAAGT
0301 TCAAGTCGTT TATTATGCGC TTTATTGACC CCAGTGCCGA GCAGGACGAA ATCTCCGAGA
0361 ATATTGATGT TAACCAGCCA CTGTATCTTC AGAAGCTGGA GGAGATTCAC ACATTGGAGG
0421 AGCCCTATCT GAATCTCAAC TGTGCCCATC TCAAGACCTT TGATCAGGAC TTGTACCGCC
0481 AGTTGATCTG CTATCCGCAG G |
in silico PCR Fragment |
0001 AGGATTGGGT GCGAACATGA GCGAGATCGA TCTGAGTTCG CCGCTGAACT ACGGCACCCC
0061 CAGCTCGATG GGGTCCATTC GAACCCCTCG TTCCGGAATT AGAGGCACTC CGCTGCGGGC
0121 GCGGCCCGAT -ATAAGAACG GACAAGCGCA TCCGCCAGGT GGCCATCGGT GGGGGCTCTG
0181 GGCTCGAACC AATTCCTGAG AAGGGCTCTG AAACCACCGA TCCTGTATCG GAATCTTCGC
0241 AAGCACCTCA GCTCGTCGTC TGGGGAACCA ATGTTGTTGT CAGCCAGTGC AAATCCAAGT
0301 TCAAGTCGTT TATTATGCGC TTTATTGACC CCAGTGCCGA GCAGGACGAA ATCTCCGAGA
0361 ATATTGATGT TAACCAGCCA CTGTATCTTC AGAAGCTGGA GGAGATTCAC ACATTGGAGG
0421 AGCCCTATCT GAATCTCAAC TGTGCCCATC TCAAGACCTT TGATCAGGAC TTGTACCGCC
0481 AGTTGATCTG CTATCCGCAG G |
Assemble Data |
1616R-3.IR_full 1 AGGATTGGGTGCGAACATGAGCGAGATCGATCTGAGTTCGCCGCTGAACTACGGCACCCC 60
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1616R-3.in silico 1 AGGATTGGGTGCGAACATGAGCGAGATCGATCTGAGTTCGCCGCTGAACTACGGCACCCC 60
1616R-3.IR_full 61 CAGCTCGATGGGGTCCATTCGAACCCCTCGTTCCGGAATTAGAGGCACTCCGCTGCGGGC 120
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1616R-3.in silico 61 CAGCTCGATGGGGTCCATTCGAACCCCTCGTTCCGGAATTAGAGGCACTCCGCTGCGGGC 120
1616R-3.IR_full 121 GCGGCCCGATAATAAGAACGGACAAGCGCATCCGCCAGGTGGCCATCGGTGGGGGCTCTG 180
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1616R-3.in silico 121 GCGGCCCGAT-ATAAGAACGGACAAGCGCATCCGCCAGGTGGCCATCGGTGGGGGCTCTG 180
1616R-3.IR_full 181 GGCTCGAACCAATTCCTGAGAAGGGCTCTGAAACCACCGATCCTGTATCGGAATCTTCGC 240
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1616R-3.in silico 181 GGCTCGAACCAATTCCTGAGAAGGGCTCTGAAACCACCGATCCTGTATCGGAATCTTCGC 240
1616R-3.IR_full 241 AAGCACCTCAGCTCGTCGTCTGGGGAACCAATGTTGTTGTCAGCCAGTGCAAATCCAAGT 300
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1616R-3.in silico 241 AAGCACCTCAGCTCGTCGTCTGGGGAACCAATGTTGTTGTCAGCCAGTGCAAATCCAAGT 300
1616R-3.IR_full 301 TCAAGTCGTTTATTATGCGCTTTATTGACCCCAGTGCCGAGCAGGACGAAATCTCCGAGA 360
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1616R-3.in silico 301 TCAAGTCGTTTATTATGCGCTTTATTGACCCCAGTGCCGAGCAGGACGAAATCTCCGAGA 360
1616R-3.IR_full 361 ATATTGATGTTAACCAGCCACTGTATCTTCAGAAGCTGGAGGAGATTCACACATTGGAGG 420
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1616R-3.in silico 361 ATATTGATGTTAACCAGCCACTGTATCTTCAGAAGCTGGAGGAGATTCACACATTGGAGG 420
1616R-3.IR_full 421 AGCCCTATCTGAATCTCAACTGTGCCCATCTCAAGACCTTTGATCAGGACTTGTACCGCC 480
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1616R-3.in silico 421 AGCCCTATCTGAATCTCAACTGTGCCCATCTCAAGACCTTTGATCAGGACTTGTACCGCC 480
1616R-3.IR_full 481 AGTTGATCTGCTATCCGCAGG 501
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1616R-3.in silico 481 AGTTGATCTGCTATCCGCAGG 501
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_057837.3 |
CG1616-RA (dpa), mRNA |
0 |
0 |
3 |
3 |
3 |
NM_166141.2 |
CG8421-RD, transcript variant D (Asph), mRNA |
0 |
0 |
3 |
3 |
3 |
NM_176185.1 |
CG8421-RE, transcript variant E (Asph), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_078517.2 |
CG2175-RA, transcript variant A (dec-1), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_167133.1 |
CG2175-RC, transcript variant C (dec-1), mRNA |
0 |
0 |
2 |
2 |
5 |
NM_167132.1 |
CG2175-RB, transcript variant B (dec-1), mRNA |
0 |
0 |
1 |
4 |
9 |
NM_078645.2 |
CG4252-RA (mei-41), mRNA |
0 |
0 |
1 |
4 |
2 |
NM_143048.1 |
CG11089-RA (CG11089), mRNA |
0 |
0 |
1 |
3 |
5 |
NM_142992.1 |
CG6454-RB, transcript variant B (CG6454), mRNA |
0 |
0 |
1 |
3 |
5 |
NM_170141.1 |
CG6454-RA, transcript variant A (CG6454), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_145105.2 |
CG17611-RA (eIF6), mRNA |
0 |
0 |
1 |
3 |
1 |
NM_143459.1 |
CG1964-RA (Kul), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_140420.1 |
CG9040-RA (CG9040), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_135830.3 |
CG16863-RA, transcript variant A (CG16863), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_206430.1 |
CG2666-RC, transcript variant C (kkv), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_079509.1 |
CG2666-RA, transcript variant A (kkv), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_169052.1 |
CG2666-RB, transcript variant B (kkv), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_001042896.1 |
CG16863-RB, transcript variant B (CG16863), mRNA |
0 |
0 |
0 |
6 |
3 |
NM_137192.1 |
CG12958-RA (CG12958), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_167241.1 |
CG1799-RC, transcript variant C (ras), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_167240.1 |
CG1799-RA, transcript variant A (ras), mRNA |
0 |
0 |
0 |
5 |
5 |
NM_079907.4 |
CG1799-RB, transcript variant B (ras), mRNA |
0 |
0 |
0 |
5 |
2 |
NM_141379.1 |
CG1157-RA (Osi15), mRNA |
0 |
0 |
0 |
4 |
8 |
NM_137690.2 |
CG10543-RA, transcript variant A (CG10543), mRNA |
0 |
0 |
0 |
4 |
6 |
NM_058149.3 |
CG3352-RA (ft), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_164387.1 |
CG3022-RB, transcript variant B (GABA-B-R3), mRNA |
0 |
0 |
0 |
4 |
5 |
NM_078723.2 |
CG3022-RA, transcript variant A (GABA-B-R3), mRNA |
0 |
0 |
0 |
4 |
4 |
NM_166696.1 |
CG9071-RB, transcript variant B (NaCP60E), mRNA |
0 |
0 |
0 |
4 |
4 |
NM_079134.5 |
CG9071-RA, transcript variant A (NaCP60E), mRNA |
0 |
0 |
0 |
4 |
3 |
NM_170062.1 |
CG10868-RB, transcript variant B (orb), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
N |
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+ |
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DB |
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+ |
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DC |
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+ |
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DM |
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+ |
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VM |
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+ |
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VB |
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+ |
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