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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 15862R-2 
 Symbol Pka-R2  Full Name cAMP-dependent protein kinase R2 
 CG No CG15862  Old CG No CG15862 
 Synonyms pka-RII, Cos1, PKa-R2, PKA, PKA RII, PKA-RII, CG15862, Pka-RII, RII, RII[[DR]], pkA, Cos-1, Cos, Epa, cos1, BcDNA:GM01761, Pka-R2, Epaulette, costal-1, Costal, cAMP-dependent protein kinase R2, Costal-1, cAMP-dependent protein kinase type II 
 Accession No (Link to NCBI) NM_078947.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCTGCAGTTCTCGATCTCCTTT 
 Primer Seq. 3'
aatctagaggtaccAGTCCAGTGTGATTGTAGGTG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CTGCAGTTCT CGATCTCCTT TCTGGTGGAA CAACCGCCGG ATGTGATCGA TTACGCTGTG 
0061 GAGTACTTCA CCAAACTGCA GTCGGAACGC CCGAGCGTCN TCTCACACGG ATCAAAGCAC 
0121 CGATGACCAG CTGAGCGTCN AACTCACAGG ATGCCGATGC GGNAACCACC AGTGATGGCC 
0181 AGCTCGCGTC GCAAATCAGT TTTCGCCGAG GCTNTACGAT CCGGAGGCGG ATGACGACGA 
0241 TGATGGCGCC ACCGCCGTGN TTCCCCAAGA CAGATGAGCA GCGCGCCCGG CTGGTCGAGT 
0301 CGGTGAAGAA CGTCCTCCTC TTCCGATCCC TCGAGAAGGA GCAGATGAAC CAAGTCCTGG 
0361 ATGCCATGTT CGAGCGAAAG GTTCAGCCGG GTGACTTTAT CATCCGCCAG GGTGACGACG 
0421 GCGATAACTT TTATGTTATT GAATCTGGCG TCTACAAAGT CTATATTAAT GACAAGCACA 
0481 TTAACACCTA CAATCACACT GGACT 
 in silico PCR Fragment
0001 CTGCAGTTCT CGATCTCCTT TCTGGTGGAA CAACCGCCGG ATGTGATCGA TTACGCTGTG 
0061 GAGTACTTCA CCAAACTGCA GTCGGAACGC CCGAGCGTC- TCTCACACGG ATCAAAGCAC 
0121 CGATGACCAG CTGAGCGTC- AACTCACAGG ATGCCGATGC GG-AACCACC AGTGATGGCC 
0181 AGCTCGCGTC GCAAATCAGT TTTCGCCGAG GCC-TACGAT CCGGAGGCGG ATGACGACGA 
0241 TGATGGCGCC ACCGCCGTG- TTCCCCAAGA CAGATGAGCA GCGCGCCCGG CTGGTCGAGT 
0301 CGGTGAAGAA CGTCCTCCTC TTCCGATCCC TCGAGAAGGA GCAGATGAAC CAAGTCCTGG 
0361 ATGCCATGTT CGAGCGAAAG GTTCAGCCGG GTGACTTTAT CATCCGCCAG GGTGACGACG 
0421 GCGATAACTT TTATGTTATT GAATCTGGCG TCTACAAAGT CTATATTAAT GACAAGCACA 
0481 TTAACACCTA CAATCACACT GGACT 
 Assemble Data

15862R-2.IR_full       1   CTGCAGTTCTCGATCTCCTTTCTGGTGGAACAACCGCCGGATGTGATCGATTACGCTGTG 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15862R-2.in silico     1   CTGCAGTTCTCGATCTCCTTTCTGGTGGAACAACCGCCGGATGTGATCGATTACGCTGTG 60


15862R-2.IR_full       61  GAGTACTTCACCAAACTGCAGTCGGAACGCCCGAGCGTCNTCTCACACGGATCAAAGCAC 120
                           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
15862R-2.in silico     61  GAGTACTTCACCAAACTGCAGTCGGAACGCCCGAGCGTC-TCTCACACGGATCAAAGCAC 120


15862R-2.IR_full       121 CGATGACCAGCTGAGCGTCNAACTCACAGGATGCCGATGCGGNAACCACCAGTGATGGCC 180
                           ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
15862R-2.in silico     121 CGATGACCAGCTGAGCGTC-AACTCACAGGATGCCGATGCGG-AACCACCAGTGATGGCC 180


15862R-2.IR_full       181 AGCTCGCGTCGCAAATCAGTTTTCGCCGAGGCTNTACGATCCGGAGGCGGATGACGACGA 240
                           ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||
15862R-2.in silico     181 AGCTCGCGTCGCAAATCAGTTTTCGCCGAGGCC-TACGATCCGGAGGCGGATGACGACGA 240


15862R-2.IR_full       241 TGATGGCGCCACCGCCGTGNTTCCCCAAGACAGATGAGCAGCGCGCCCGGCTGGTCGAGT 300
                           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
15862R-2.in silico     241 TGATGGCGCCACCGCCGTG-TTCCCCAAGACAGATGAGCAGCGCGCCCGGCTGGTCGAGT 300


15862R-2.IR_full       301 CGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGAGCAGATGAACCAAGTCCTGG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15862R-2.in silico     301 CGGTGAAGAACGTCCTCCTCTTCCGATCCCTCGAGAAGGAGCAGATGAACCAAGTCCTGG 360


15862R-2.IR_full       361 ATGCCATGTTCGAGCGAAAGGTTCAGCCGGGTGACTTTATCATCCGCCAGGGTGACGACG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15862R-2.in silico     361 ATGCCATGTTCGAGCGAAAGGTTCAGCCGGGTGACTTTATCATCCGCCAGGGTGACGACG 420


15862R-2.IR_full       421 GCGATAACTTTTATGTTATTGAATCTGGCGTCTACAAAGTCTATATTAATGACAAGCACA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15862R-2.in silico     421 GCGATAACTTTTATGTTATTGAATCTGGCGTCTACAAAGTCTATATTAATGACAAGCACA 480


15862R-2.IR_full       481 TTAACACCTACAATCACACTGGACT 505
                           |||||||||||||||||||||||||
15862R-2.in silico     481 TTAACACCTACAATCACACTGGACT 505

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_165723.2  CG15862-RB, transcript variant B (Pka-R2), mRNA 
100   482  NM_078947.2  CG15862-RA, transcript variant A (Pka-R2), mRNA 
100   482  NM_176117.1  CG15862-RC, transcript variant C (Pka-R2), mRNA 
0   NM_206469.1  CG11870-RD, transcript variant D (CG11870), mRNA 
0   NM_169337.2  CG11870-RB, transcript variant B (CG11870), mRNA 
0   NM_206470.1  CG11870-RC, transcript variant C (CG11870), mRNA 
0   NM_141734.2  CG11870-RA, transcript variant A (CG11870), mRNA 
0   NM_141791.1  CG4800-RA (Tctp), mRNA 
0   NM_169434.1  CG6946-RB, transcript variant B (glo), mRNA 
0   NM_141863.1  CG6946-RA, transcript variant A (glo), mRNA 
0   NM_169435.1  CG6946-RC, transcript variant C (glo), mRNA 
0   NM_132066.1  CG4320-RA (raptor), mRNA 
0   NM_139413.2  CG12024-RA, transcript variant A (CG12024), mRNA 
0   NM_167921.1  CG12024-RB, transcript variant B (CG12024), mRNA 
0   18  NM_132831.1  CG8184-RB (CG8184), mRNA 
0   13  NM_176497.1  CG9297-RB, transcript variant B (CG9297), mRNA 
0   NM_132206.1  CG2253-RA (Upf2), mRNA 
0   13  NM_132207.2  CG1571-RA (CG1571), mRNA 
0   NM_080373.2  CG18681-RA (epsilonTry), mRNA 
0   NM_001042881.1  CG8486-RC, transcript variant C (CG8486), mRNA 
0   NM_164795.2  CG8486-RB, transcript variant B (CG8486), mRNA 
0   NM_135344.2  CG8486-RA, transcript variant A (CG8486), mRNA 
0   NM_137667.3  CG13442-RA (CG13442), mRNA 
0   NM_140554.1  CG12486-RA (CG12486), mRNA 
0   13  NM_001043070.1  CG34146-RA (brp), mRNA 
0   NM_166696.1  CG9071-RB, transcript variant B (NaCP60E), mRNA 
0   NM_132471.1  CG11105-RB, transcript variant B (CG11105), mRNA 
0   NM_167277.1  CG11105-RA, transcript variant A (CG11105), mRNA 
0   NM_079134.5  CG9071-RA, transcript variant A (NaCP60E), mRNA 
0   NM_137165.1  CG12424-RA, transcript variant A (CG12424), mRNA 

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