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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 15816R-1 
 Symbol CG15816  Full Name CG15816 
 CG No CG15816  Old CG No CG15816 
 Synonyms CG15816 
 Accession No (Link to NCBI) NM_133013.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgACAACAGCACCAGTGGGAAAT 
 Primer Seq. 3'
aatctagaggtaccTTCAGTTTCGATGGGGATGCG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ACAACAGCAC CAGTGGGAAA TACAGCAGAC ACAGGAAACA GTGAAAGCCC GATAATAGCG 
0061 ACGCCGGAGG AGAAATCCCA AAGACGACGC TCCACATTCT ATGTACCATT GGTAATAGAA 
0121 GACGAAGAGG AGACCAAAAA GGATACGCCC GCAGATCATC TGGTCCAAAA GTCCTCGAGC 
0181 AATACGAGCC TAAGTAGCAA TAGCAATTCC CTAACGAATT TCGAAACAAA ATCATCGAAA 
0241 AGCTATAGTC TGCGCAAATC GAGTTCGGTG AAAAGCGGCG TGGCCAAGGT TAGTGCTCTC 
0301 TTCGAGCGGA AAACTCCATC GAAAATGTCG CCACCTTGCG GCTTCAATTG GAGCATCAGT 
0361 GGCAGCGAAA ATACGGCCCA ATACTCCGAT ACCGATGATG ATGAGGAGAA CTCCACGGAG 
0421 GCACGTCATT GCGAACAGCT GCTCAAGACC CTGCCCAGCG GTAATAATAA TTCCACCACC 
0481 GCATCCCCAT CGAAACTGAA  
 in silico PCR Fragment
0001 ACAACAGCAC CAGTGGGAAA TACAGCAGAC ACAGGAAACA GTGAAAGCCC GATAATAGCG 
0061 ACGCCGGAGG AGAAATCCCA AAGACGACGC TCCACATTCT ATGTACCATT GGTAATAGAA 
0121 GACGAAGAGG AGACCAAAAA GGATACGCCC GCAGATCATC TGGTCCAAAA GTCCTCGAGC 
0181 AATACGAGCC TAAGTAGCAA TAGCAATTCC CTAACGAATT CCGAAACAAA ATCATCGAAA 
0241 AGCTATAGTC TGCGCAAATC GAGTTCGGTG AAAAGCGGCG TGGCCAAGGT TAGTGCTCTC 
0301 TTCGAGCGGA AAACTCCATC GAAAATGTCG CCACCTTGCG GCTTCAATTG GAGCATCAGT 
0361 GGCAGCGAAA ATACGGCCCA ATACTCCGAT ACCGATGATG ATGAGGAGAA CTCCACGGAG 
0421 GCACGTCATC GCGAACAGCT GCTCAAGACC CTGCCCAGCG GTAATAATAA TTCCACCACC 
0481 GCATCCCCAT CGAAACTGAA  
 Assemble Data

15816R-1.IR_full       1   ACAACAGCACCAGTGGGAAATACAGCAGACACAGGAAACAGTGAAAGCCCGATAATAGCG 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15816R-1.in silico     1   ACAACAGCACCAGTGGGAAATACAGCAGACACAGGAAACAGTGAAAGCCCGATAATAGCG 60


15816R-1.IR_full       61  ACGCCGGAGGAGAAATCCCAAAGACGACGCTCCACATTCTATGTACCATTGGTAATAGAA 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15816R-1.in silico     61  ACGCCGGAGGAGAAATCCCAAAGACGACGCTCCACATTCTATGTACCATTGGTAATAGAA 120


15816R-1.IR_full       121 GACGAAGAGGAGACCAAAAAGGATACGCCCGCAGATCATCTGGTCCAAAAGTCCTCGAGC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15816R-1.in silico     121 GACGAAGAGGAGACCAAAAAGGATACGCCCGCAGATCATCTGGTCCAAAAGTCCTCGAGC 180


15816R-1.IR_full       181 AATACGAGCCTAAGTAGCAATAGCAATTCCCTAACGAATTTCGAAACAAAATCATCGAAA 240
                           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
15816R-1.in silico     181 AATACGAGCCTAAGTAGCAATAGCAATTCCCTAACGAATTCCGAAACAAAATCATCGAAA 240


15816R-1.IR_full       241 AGCTATAGTCTGCGCAAATCGAGTTCGGTGAAAAGCGGCGTGGCCAAGGTTAGTGCTCTC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15816R-1.in silico     241 AGCTATAGTCTGCGCAAATCGAGTTCGGTGAAAAGCGGCGTGGCCAAGGTTAGTGCTCTC 300


15816R-1.IR_full       301 TTCGAGCGGAAAACTCCATCGAAAATGTCGCCACCTTGCGGCTTCAATTGGAGCATCAGT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15816R-1.in silico     301 TTCGAGCGGAAAACTCCATCGAAAATGTCGCCACCTTGCGGCTTCAATTGGAGCATCAGT 360


15816R-1.IR_full       361 GGCAGCGAAAATACGGCCCAATACTCCGATACCGATGATGATGAGGAGAACTCCACGGAG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15816R-1.in silico     361 GGCAGCGAAAATACGGCCCAATACTCCGATACCGATGATGATGAGGAGAACTCCACGGAG 420


15816R-1.IR_full       421 GCACGTCATTGCGAACAGCTGCTCAAGACCCTGCCCAGCGGTAATAATAATTCCACCACC 480
                           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
15816R-1.in silico     421 GCACGTCATCGCGAACAGCTGCTCAAGACCCTGCCCAGCGGTAATAATAATTCCACCACC 480


15816R-1.IR_full       481 GCATCCCCATCGAAACTGAA 500
                           ||||||||||||||||||||
15816R-1.in silico     481 GCATCCCCATCGAAACTGAA 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_133013.1  CG15816-RA (CG15816), mRNA 
0.62   16  NM_164374.1  CG18497-RA, transcript variant A (spen), mRNA 
0.62   16  NM_079979.2  CG18497-RB, transcript variant B (spen), mRNA 
0.62   13  NM_164375.1  CG18497-RC, transcript variant C (spen), mRNA 
0   NM_169844.1  CG31149-RA (CG31149), mRNA 
0   NM_139760.1  CG10472-RA (CG10472), mRNA 
0   NM_167636.1  CG32543-RA (CG32543), mRNA 
0   NM_167222.1  CG32688-RB, transcript variant B (Hk), mRNA 
0   NM_078549.3  CG32688-RA, transcript variant A (Hk), mRNA 
0   NM_165024.1  CG31856-RA (CG31856), mRNA 
0   NM_135691.1  CG6734-RA (CG6734), mRNA 
0   NM_140477.1  CG3020-RA (CG3020), mRNA 
0   NM_137302.2  CG8098-RA, transcript variant A (Picot), mRNA 
0   NM_166187.1  CG8098-RB, transcript variant B (Picot), mRNA 
0   NM_134830.1  CG3597-RA (CG3597), mRNA 
0   NM_079001.2  CG3886-RA (Psc), mRNA 
0   NM_001042897.1  CG4482-RD, transcript variant D (mol), mRNA 
0   NM_001042898.1  CG4482-RC, transcript variant C (mol), mRNA 
0   NM_135889.3  CG4482-RA, transcript variant A (mol), mRNA 
0   NM_167364.1  CG15747-RA (CG15747), mRNA 
0   NM_140153.4  CG6449-RA, transcript variant A (NijA), mRNA 
0   NM_206318.1  CG6449-RB, transcript variant B (NijA), mRNA 
0   NM_135443.3  CG3759-RA (CG3759), mRNA 
0   NM_057839.3  CG7147-RA, transcript variant A (kuz), mRNA 
0   NM_165047.1  CG7147-RB, transcript variant B (kuz), mRNA 
0   NM_001014481.1  CG7147-RC, transcript variant C (kuz), mRNA 
0   NM_143637.3  CG1937-RA (sip3), mRNA 
0   NM_078854.1  CG18096-RA (TepI), mRNA 
0   NM_167874.1  CG9181-RC, transcript variant C (Ptp61F), mRNA 
0   NM_057340.2  CG9181-RB, transcript variant B (Ptp61F), mRNA 

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