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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 15582R-3 
 Symbol Obp83cd  Full Name Odorant-binding protein 83cd 
 CG No CG15582  Old CG No CG15582 
 Synonyms CG15582, Obp83c, Obp83d, 83c-2, 83c-1, 83d, 83c, Obp83cd 
 Accession No (Link to NCBI) NM_141355.2 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgTGGTCGGATAGCTACGAGGAA 
 Primer Seq. 3' 
aatctagaggtaccGATGGCAGGTCCTTATGCGAG 
 Predicted Fragment Size 
499 
 IR fragment full Seq 
0001 TGGTCGGATA GCTACGAGGA AATCCCCTGC TTCACGCGCT GCTATTTGTC CGAGATGTTC 
0061 GACTTTTACA ATAACTTAAC GGGCTTCAAT AAGGACGGAA TTGTGGGCGT CTTTGGAAGA 
0121 CCCGTCTACG AAGCCTGCCG AAAGAAATTG GAACTGCCAT TCGAATCAGG CGAGAGCAGC 
0181 TGCAAACATG CCTACGAGGG CTTCCACTGC ATCACCAACA TGGAAAGCCA CCCGTTCACG 
0241 GTTATTGACA ACATGCCAAA CATATCCCCG TCGGCCAAGG ATGCAATGAA GGACTGCCTT 
0301 CAGGATGTCC ACCAGGACGA GTGGAAGAGC TTCGATGCCT TCGCCTACTA TCCTGTCAAT 
0361 GAACCGATTC CGTGCTTCAC CCGGTGCTTC GTGGACAAGC TGCATATCTT CGAGGAGAAA 
0421 ACGCGTCTTT GGAAACTGGA GGCGATGAAG CAAAACCTGG GCATTCCGGC CAAAGGAGCT 
0481 CGCATAAGGA CCTGCCATC 
 in silico PCR Fragment 
0001 TGGTCGGATA GCTACGAGGA AATCCCCTGC TTCACGCGCT GCTATTTGTC CGAGATGTTC 
0061 GACTTTTACA ATAACTTAAC GGGCTTCAAT AAGGACGGAA TTGTGGGCGT CTTTGGAAGA 
0121 CCCGTCTACG AAGCCTGCCG AAAGAAATTG GAACTGCCAT TCGAATCAGG CGAGAGCAGC 
0181 TGCAAACATG CCTACGAGGG CTTCCACTGC ATCACCAACA TGGAAAGCCA CCCGTTCACG 
0241 GTTATTGACA ACATGCCAAA CATATCCCCG TCGGCCAAGG ATGCAATGAA GGACTGCCTT 
0301 CAGGATGTCC ACCAGGACGA GTGGAAGAGC TTCGATGCCT TCGCCTACTA TCCTGTCAAT 
0361 GAACCGATTC CGTGCTTCAC CCGGTGCTTC GTGGACAAGC TGCATATCTT CGAGGAGAAA 
0421 ACGCGTCTTT GGAAACTGGA GGCGATGAAG CAAAACCTGG GCATTCCGGC CAAAGGAGCT 
0481 CGCATAAGGA CCTGCCATC 
 Assemble Data 

15582R-3.IR_full       1   TGGTCGGATAGCTACGAGGAAATCCCCTGCTTCACGCGCTGCTATTTGTCCGAGATGTTC 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15582R-3.in silico     1   TGGTCGGATAGCTACGAGGAAATCCCCTGCTTCACGCGCTGCTATTTGTCCGAGATGTTC 60


15582R-3.IR_full       61  GACTTTTACAATAACTTAACGGGCTTCAATAAGGACGGAATTGTGGGCGTCTTTGGAAGA 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15582R-3.in silico     61  GACTTTTACAATAACTTAACGGGCTTCAATAAGGACGGAATTGTGGGCGTCTTTGGAAGA 120


15582R-3.IR_full       121 CCCGTCTACGAAGCCTGCCGAAAGAAATTGGAACTGCCATTCGAATCAGGCGAGAGCAGC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15582R-3.in silico     121 CCCGTCTACGAAGCCTGCCGAAAGAAATTGGAACTGCCATTCGAATCAGGCGAGAGCAGC 180


15582R-3.IR_full       181 TGCAAACATGCCTACGAGGGCTTCCACTGCATCACCAACATGGAAAGCCACCCGTTCACG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15582R-3.in silico     181 TGCAAACATGCCTACGAGGGCTTCCACTGCATCACCAACATGGAAAGCCACCCGTTCACG 240


15582R-3.IR_full       241 GTTATTGACAACATGCCAAACATATCCCCGTCGGCCAAGGATGCAATGAAGGACTGCCTT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15582R-3.in silico     241 GTTATTGACAACATGCCAAACATATCCCCGTCGGCCAAGGATGCAATGAAGGACTGCCTT 300


15582R-3.IR_full       301 CAGGATGTCCACCAGGACGAGTGGAAGAGCTTCGATGCCTTCGCCTACTATCCTGTCAAT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15582R-3.in silico     301 CAGGATGTCCACCAGGACGAGTGGAAGAGCTTCGATGCCTTCGCCTACTATCCTGTCAAT 360


15582R-3.IR_full       361 GAACCGATTCCGTGCTTCACCCGGTGCTTCGTGGACAAGCTGCATATCTTCGAGGAGAAA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15582R-3.in silico     361 GAACCGATTCCGTGCTTCACCCGGTGCTTCGTGGACAAGCTGCATATCTTCGAGGAGAAA 420


15582R-3.IR_full       421 ACGCGTCTTTGGAAACTGGAGGCGATGAAGCAAAACCTGGGCATTCCGGCCAAAGGAGCT 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15582R-3.in silico     421 ACGCGTCTTTGGAAACTGGAGGCGATGAAGCAAAACCTGGGCATTCCGGCCAAAGGAGCT 480


15582R-3.IR_full       481 CGCATAAGGACCTGCCATC 499
                           |||||||||||||||||||
15582R-3.in silico     481 CGCATAAGGACCTGCCATC 499



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   481  0  0  2  NM_141355.2  CG15582-RA (Obp83cd), mRNA 
0   0  5  2  3  NM_142131.1  CG7362-RA (CG7362), mRNA 
0   0  3  2  2  NM_139946.1  CG7194-RA (CG7194), mRNA 
0   0  1  4  7  NM_143300.1  CG3339-RA, transcript variant A (CG3339), mRNA 
0   0  1  4  7  NM_001043297.1  CG3339-RB, transcript variant B (CG3339), mRNA 
0   0  1  3  19  NM_175960.3  CG33196-RB (dp), mRNA 
0   0  1  3  10  NM_057790.4  CG32848-RA (VAChT), mRNA 
0   0  1  3  5  NM_079676.2  CG6009-RA (P5cr), mRNA 
0   0  1  3  3  NM_079995.2  CG2019-RA (disp), mRNA 
0   0  1  2  2  NM_166306.1  CG15093-RA, transcript variant A (CG15093), mRNA 
0   0  1  2  2  NM_166307.2  CG15093-RC, transcript variant C (CG15093), mRNA 
0   0  1  2  2  NM_137529.2  CG15093-RB, transcript variant B (CG15093), mRNA 
0   0  0  5  2  NM_137099.2  CG8494-RA (CG8494), mRNA 
0   0  0  4  6  NM_138148.2  CG3829-RA (CG3829), mRNA 
0   0  0  4  4  NM_140870.1  CG9300-RA (CG9300), mRNA 
0   0  0  4  4  NM_137119.2  CG10105-RA (CG10105), mRNA 
0   0  0  4  4  NM_001042910.1  CG11628-RB, transcript variant B (Grp1), mRNA 
0   0  0  4  3  NM_206796.1  CG33499-RA (Sdic:CG33499), mRNA 
0   0  0  4  3  NM_057730.4  CG18000-RE, transcript variant E (sw), mRNA 
0   0  0  4  3  NM_057724.3  CG18000-RI, transcript variant I (sw), mRNA 
0   0  0  4  3  NM_057722.3  CG18000-RG, transcript variant G (sw), mRNA 
0   0  0  4  3  NM_206793.1  CG33497-RA (Sdic:CG33497), mRNA 
0   0  0  4  3  NM_079931.3  CG9580-RA (Sdic:CG9580), mRNA 
0   0  0  4  3  NM_206799.1  CG18000-RL, transcript variant L (sw), mRNA 
0   0  0  4  3  NM_206798.1  CG18000-RM, transcript variant M (sw), mRNA 
0   0  0  4  3  NM_057723.3  CG18000-RH, transcript variant H (sw), mRNA 
0   0  0  4  3  NM_057726.3  CG18000-RA, transcript variant A (sw), mRNA 
0   0  0  4  3  NM_057729.3  CG18000-RB, transcript variant B (sw), mRNA 
0   0  0  4  3  NM_057728.3  CG18000-RC, transcript variant C (sw), mRNA 
0   0  0  4  3  NM_057731.3  CG18000-RF, transcript variant F (sw), mRNA 

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