National Institute of Genetics
Contact us      Quick Search       
NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -NIG-Fly - Fly Stocks of National Institute of Genetics (NIG) Drosophila strain -
Home Home
Japanese | English  
Notice:

Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
NIG-RNAi Strains Detail
Request : Click the "Order" button to request for this stock   request request_help.gif
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 15356R-1 
 Symbol CG15356  Full Name CG15356 
 CG No CG15356  Old CG No CG15356 
 Synonyms CG15356 
 Accession No (Link to NCBI) NM_134789.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgAAACGCTGGAAATGTCGCGGG 
 Primer Seq. 3' 
aatctagaggtaccGAACGGCTCCGCCATGATCAC 
 Predicted Fragment Size 
500 
 IR fragment full Seq 
0001 AAACGCTGGa AATGTCGCGG GACGAGTGCC GAgGCATGCT GCGTCGACTG GAACTCGAGT 
0061 CCTATTCGCA TGTGGTGAGC GTTTTTCGCG CNCCAAGGAG CCCTCAGTGA AACGAAGGCG 
0121 AAACTGCTGG AGGAGCTGCG CCAGCAGTNT CCACAATTAA CCAGGAACGC CACAGGGCGG 
0181 AAGTGCGGAG GGCGGCCAAC GACGAGCAGC TCTGCACCAT AGCGGAAAAC GTTTGTGGGC 
0241 CCAACACCTG GCAGGAATGG TCACGCGAGG GACGACGCCT CTATCCTCTT CTTCCCAGGA 
0301 TTAGTCCACA AACTGCGCTG AGCATCGTTG CCAATGACCT GGCGGCCAAA GCCTGCGAGG 
0361 AAAACGCCAA ATTGGCTGCT CCGGcCGAAA CGGCGGTCCA CTTTGGAGAA GCCCTCGTGG 
0421 AGCAGGCCTC GCTGATGAGC CTGAAATATC CGCGTGGTGC CAGGATCCAG GGACACCGCC 
0481 ATGGTGATCA NGGcGGAGcC GTTC 
 in silico PCR Fragment 
0001 AAACGCTGGA AATGTCGCGG GACGAGTGCC GAGGCATGCT GCGTCGACTG GAACTCGAGT 
0061 CCTATTCACA TGTGGTGAGC GTTTTTCGCG C-CCAAGGAG CCCTCAGTGA AACGAAGGCG 
0121 AAACTGCTGG AGGAGCTGCG CCAGCAGT-T CCAC-ATTAA CCAGGAACGC CACAGGGCGG 
0181 AAGTGCGGAG GGCGGCCAAC GACGAGCAGC TCTGCACCAT AGCGGAAAAC GTTTGTGGGC 
0241 CCAACACCTG GCAGGAATGG TCACGCGAGG GACGACGCCT CTATCCTCTT CTTCCCAGGA 
0301 TTAGTCCACA AACTGCGCTG AGCATCGTTG CCAATGACCT GGCGGCCAAA GCCTGCGAGG 
0361 AAAACGCCAA ATTGGCTGCT CCGGCCGAAA CGGCGGTCCA CTTTGGAGAA GCCCTCGTGG 
0421 AGCAGGCCTC GCTGATGAGC CTGAAATATC CGCGTGGTGC CAGGATCCA- GGACACCGCC 
0481 ATGGTGATCA TGGCGGAGCC GTTC 
 Assemble Data 

15356R-1.IR_full       1   AAACGCTGGAAATGTCGCGGGACGAGTGCCGAGGCATGCTGCGTCGACTGGAACTCGAGT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15356R-1.in silico     1   AAACGCTGGAAATGTCGCGGGACGAGTGCCGAGGCATGCTGCGTCGACTGGAACTCGAGT 60


15356R-1.IR_full       61  CCTATTCGCATGTGGTGAGCGTTTTTCGCGCNCCAAGGAGCCCTCAGTGAAACGAAGGCG 120
                           ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
15356R-1.in silico     61  CCTATTCACATGTGGTGAGCGTTTTTCGCGC-CCAAGGAGCCCTCAGTGAAACGAAGGCG 120


15356R-1.IR_full       121 AAACTGCTGGAGGAGCTGCGCCAGCAGTNTCCACAATTAACCAGGAACGCCACAGGGCGG 180
                           |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
15356R-1.in silico     121 AAACTGCTGGAGGAGCTGCGCCAGCAGT-TCCAC-ATTAACCAGGAACGCCACAGGGCGG 180


15356R-1.IR_full       181 AAGTGCGGAGGGCGGCCAACGACGAGCAGCTCTGCACCATAGCGGAAAACGTTTGTGGGC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15356R-1.in silico     181 AAGTGCGGAGGGCGGCCAACGACGAGCAGCTCTGCACCATAGCGGAAAACGTTTGTGGGC 240


15356R-1.IR_full       241 CCAACACCTGGCAGGAATGGTCACGCGAGGGACGACGCCTCTATCCTCTTCTTCCCAGGA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15356R-1.in silico     241 CCAACACCTGGCAGGAATGGTCACGCGAGGGACGACGCCTCTATCCTCTTCTTCCCAGGA 300


15356R-1.IR_full       301 TTAGTCCACAAACTGCGCTGAGCATCGTTGCCAATGACCTGGCGGCCAAAGCCTGCGAGG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15356R-1.in silico     301 TTAGTCCACAAACTGCGCTGAGCATCGTTGCCAATGACCTGGCGGCCAAAGCCTGCGAGG 360


15356R-1.IR_full       361 AAAACGCCAAATTGGCTGCTCCGGCCGAAACGGCGGTCCACTTTGGAGAAGCCCTCGTGG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
15356R-1.in silico     361 AAAACGCCAAATTGGCTGCTCCGGCCGAAACGGCGGTCCACTTTGGAGAAGCCCTCGTGG 420


15356R-1.IR_full       421 AGCAGGCCTCGCTGATGAGCCTGAAATATCCGCGTGGTGCCAGGATCCAGGGACACCGCC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
15356R-1.in silico     421 AGCAGGCCTCGCTGATGAGCCTGAAATATCCGCGTGGTGCCAGGATCCA-GGACACCGCC 480


15356R-1.IR_full       481 ATGGTGATCANGGCGGAGCCGTTC 504
                           |||||||||| |||||||||||||
15356R-1.in silico     481 ATGGTGATCATGGCGGAGCCGTTC 504



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  0  1  8  NM_134789.1  CG15356-RA (CG15356), mRNA 
0   0  4  2  5  NM_142666.3  CG17274-RA, transcript variant A (CG17274), mRNA 
0   0  4  2  3  NM_137177.2  CG11808-RA (CG11808), mRNA 
0   0  4  2  2  NM_135412.1  CG9487-RA (CG9487), mRNA 
0   0  3  4  8  NM_176739.1  CG33173-RA (CG33173), mRNA 
0   0  3  2  6  NM_140767.1  CG5485-RA (Prestin), mRNA 
0   0  3  2  6  NM_143730.2  CG8186-RA (Vha36), mRNA 
0   0  2  11  23  NM_143528.2  CG9682-RA (CG9682), mRNA 
0   0  2  4  3  NM_141680.1  CG16908-RA (CG16908), mRNA 
0   0  2  3  4  NM_140423.2  CG8783-RA, transcript variant A (CG8783), mRNA 
0   0  2  3  4  NM_168570.1  CG8783-RB, transcript variant B (CG8783), mRNA 
0   0  2  3  2  NM_166482.1  CG30404-RB, transcript variant B (Tango11), mRNA 
0   0  2  3  2  NM_166481.1  CG30404-RA, transcript variant A (Tango11), mRNA 
0   0  1  5  5  NM_079036.3  CG7773-RA (fidipidine), mRNA 
0   0  1  4  2  NM_143967.1  CG17193-RA (CG17193), mRNA 
0   0  1  4  2  NM_164405.1  CG4710-RB, transcript variant B (smi21F), mRNA 
0   0  1  4  2  NM_134724.2  CG4710-RA, transcript variant A (smi21F), mRNA 
0   0  1  3  7  NM_078866.2  CG6549-RA, transcript variant A (fws), mRNA 
0   0  1  3  7  NM_165221.1  CG6549-RC, transcript variant C (fws), mRNA 
0   0  1  3  5  NM_138107.2  CG4781-RA (CG4781), mRNA 
0   0  1  3  4  NM_170181.1  CG31120-RB, transcript variant B (CG31120), mRNA 
0   0  1  3  4  NM_169170.1  CG1070-RC, transcript variant C (Alh), mRNA 
0   0  1  3  4  NM_169172.1  CG1070-RB, transcript variant B (Alh), mRNA 
0   0  1  3  3  NM_130534.2  CG14626-RA (CG14626), mRNA 
0   0  1  3  2  NM_143428.2  CG14514-RA (Brd8), mRNA 
0   0  1  2  3  NM_057466.2  CG8896-RA (18w), mRNA 
0   0  1  2  3  NM_176219.1  CG5134-RB, transcript variant B (MED9), mRNA 
0   0  1  2  3  NM_001043082.1  CG11798-RC, transcript variant C (chn), mRNA 
0   0  1  2  3  NM_176220.1  CG5134-RC, transcript variant C (MED9), mRNA 
0   0  1  2  3  NM_206119.1  CG11798-RB, transcript variant B (chn), mRNA 

SHIGEN - SHared Information of GENetic resources - National Institute of Genetics (NIG)
 Copyright (c) National Institute of Genetics (NIG)
All rights reserved.
The NIG-Fly is a part of the National BioResource Project which started in 2002.