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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 14948R-1 
 Symbol dpr18  Full Name dpr18 
 CG No CG14948  Old CG No CG14948 
 Synonyms Dpr-18, CT34788, CG14948, dpr18 
 Accession No (Link to NCBI) NM_132874.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication] 		Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]

Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5' 
aaggcctacatggccggaccgGCACGAGGAATCATTGGACAG 
 Primer Seq. 3' 
aatctagaggtaccGCTACGCGATATTTGGCATTG 
 Predicted Fragment Size 
518 
 IR fragment full Seq 
0001 GCACGAGGAA TCATTGGACA GCAAGTGGAT TCGCACGTGT CACAGAACGA CCACGTAGCA 
0061 AGCACCACCA CGAGCACCAC TGGGGACCCT TTTTTGAGGA GCCCATCAAC TCGGCAACCT 
0121 CGGGTGACAA CCTCGTTTCC GCCGTACATT TGTTTACGGA AGCGGTGCTC AATTGCCGTG 
0181 NTCGGTATGC TCAAGGATAA AACTGTCATG TGGGTCAGGC GAACGGCAGA GAAGGTATCG 
0241 CTCCTGACCG TTGGCAACGT GACCTACAGT GGAGACCCGA GAATTCGGGT GAAGTTCCAG 
0301 TACCCGAACA ATTGGCGATT ACTTATCAAT CCCACGCAGA CTGAAGATGC CGGAGTTTAC 
0361 ATGTGCCAGG TTTCCACCCA TCCCCCCCGG GTATTCACCA CAAATCTCAC TGTCTTGGAA 
0421 CCCCCCCTGA GGATAATCGA TGAGCACGAG AGGGACGTGG GGGATCGTTA TTATAAGTCT 
0481 GGAAGCACCG TCGATCTACA ATGCCAAATA TCGCGTAGN 
 in silico PCR Fragment 
0001 GCACGAGGAA TCATTGGACA GCAAGTGGAT TCGCACGTGT CACAGAACGA CCACGTAGCA 
0061 AGCACCACCA CGAGCACCAC TGGGGACCCT TTTTTGAGGA GCCCATCAAC TCGGCAACCT 
0121 CGGGTGACAA CCTCGTTTCC GCCGTACATT TGTTTACGGA AGCGGTGCTC AATTGCCGTG 
0181 -TCGGTATGC TCAAGGATAA AACTGTCATG TGGGTCAGGC GAACGGCAGA GAAGGTATCG 
0241 CTCCTGACCG TTGGCAACGT GACCTACAGT GGAGACCCGA GAATTCGGGT GAAGTTCCAG 
0301 TACCCGAACA ATTGGCGATT ACTTATCAAT CCCACGCAGA CTGAAGATGC CGGAGTTTAC 
0361 ATGTGCCAGG TTTCCACCCA TCCCCCCCGG GTATTCACCA CAAATCTCAC TGTCTTGGAA 
0421 CCCCCCCTGA GGATAATCGA TGAGCACGAG AGGGACGTGG GGGATCGTTA TTATAAGTCT 
0481 GGAAGCACCG TCGATCTACA ATGCCAAATA TCGCGTAGC 
 Assemble Data 

14948R-1.IR_full       1   GCACGAGGAATCATTGGACAGCAAGTGGATTCGCACGTGTCACAGAACGACCACGTAGCA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14948R-1.in silico     1   GCACGAGGAATCATTGGACAGCAAGTGGATTCGCACGTGTCACAGAACGACCACGTAGCA 60


14948R-1.IR_full       61  AGCACCACCACGAGCACCACTGGGGACCCTTTTTTGAGGAGCCCATCAACTCGGCAACCT 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14948R-1.in silico     61  AGCACCACCACGAGCACCACTGGGGACCCTTTTTTGAGGAGCCCATCAACTCGGCAACCT 120


14948R-1.IR_full       121 CGGGTGACAACCTCGTTTCCGCCGTACATTTGTTTACGGAAGCGGTGCTCAATTGCCGTG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14948R-1.in silico     121 CGGGTGACAACCTCGTTTCCGCCGTACATTTGTTTACGGAAGCGGTGCTCAATTGCCGTG 180


14948R-1.IR_full        181 TCGGTATGCTCAAGGATAAAACTGTCATGTGGGTCAGGCGAACGGCAGAGAAGGTATCG 239
                            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14948R-1.in silico      181 TCGGTATGCTCAAGGATAAAACTGTCATGTGGGTCAGGCGAACGGCAGAGAAGGTATCG 239


14948R-1.IR_full       241 CTCCTGACCGTTGGCAACGTGACCTACAGTGGAGACCCGAGAATTCGGGTGAAGTTCCAG 299
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14948R-1.in silico     241 CTCCTGACCGTTGGCAACGTGACCTACAGTGGAGACCCGAGAATTCGGGTGAAGTTCCAG 299


14948R-1.IR_full       301 TACCCGAACAATTGGCGATTACTTATCAATCCCACGCAGACTGAAGATGCCGGAGTTTAC 359
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14948R-1.in silico     301 TACCCGAACAATTGGCGATTACTTATCAATCCCACGCAGACTGAAGATGCCGGAGTTTAC 359


14948R-1.IR_full       361 ATGTGCCAGGTTTCCACCCATCCCCCCCGGGTATTCACCACAAATCTCACTGTCTTGGAA 419
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14948R-1.in silico     361 ATGTGCCAGGTTTCCACCCATCCCCCCCGGGTATTCACCACAAATCTCACTGTCTTGGAA 419


14948R-1.IR_full       421 CCCCCCCTGAGGATAATCGATGAGCACGAGAGGGACGTGGGGGATCGTTATTATAAGTCT 479
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14948R-1.in silico     421 CCCCCCCTGAGGATAATCGATGAGCACGAGAGGGACGTGGGGGATCGTTATTATAAGTCT 479


14948R-1.IR_full       481 GGAAGCACCGTCGATCTACAATGCCAAATATCGCGTAGN 518
                           |||||||||||||||||||||||||||||||||||||| 
14948R-1.in silico     481 GGAAGCACCGTCGATCTACAATGCCAAATATCGCGTAGC 518



 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   500  0  0  0  NM_132874.1  CG14948-RA (dpr18), mRNA 
0.2   1  3  3  3  NM_137448.2  CG5756-RA, transcript variant A (CG5756), mRNA 
0   0  9  8  21  NM_130678.2  CG14419-RA (CG14419), mRNA 
0   0  4  4  5  NM_132973.1  CG18258-RA (CG18258), mRNA 
0   0  4  4  4  NM_166840.1  CG3777-RA, transcript variant A (CG3777), mRNA 
0   0  4  4  4  NM_166841.1  CG3777-RC, transcript variant C (CG3777), mRNA 
0   0  4  4  4  NM_130483.2  CG3777-RB, transcript variant B (CG3777), mRNA 
0   0  3  5  5  NM_001038867.1  CG33996-RA (dpr13), mRNA 
0   0  3  4  7  NM_143996.1  CG13643-RA (CG13643), mRNA 
0   0  3  3  3  NM_137750.1  CG10321-RA (CG10321), mRNA 
0   0  2  6  5  NM_135286.1  CG6739-RA (CG6739), mRNA 
0   0  2  4  4  NM_166865.2  CG32815-RA (CG32815), mRNA 
0   0  2  3  6  NM_164567.1  CG3399-RB, transcript variant B (capu), mRNA 
0   0  2  3  6  NM_057618.2  CG3399-RA, transcript variant A (capu), mRNA 
0   0  2  3  6  NM_164566.1  CG3399-RD, transcript variant D (capu), mRNA 
0   0  2  3  6  NM_164565.1  CG3399-RC, transcript variant C (capu), mRNA 
0   0  2  2  6  NM_206691.2  CG1817-RA, transcript variant A (Ptp10D), mRNA 
0   0  2  2  3  NM_080079.2  CG32120-RA (sens), mRNA 
0   0  1  10  7  NM_138222.2  CG12191-RA (dpr20), mRNA 
0   0  1  5  10  NM_131939.4  CG17592-RB, transcript variant B (Usf), mRNA 
0   0  1  5  10  NM_167010.1  CG17592-RA, transcript variant A (Usf), mRNA 
0   0  1  5  5  NM_130646.2  CG14045-RA (CG14045), mRNA 
0   0  1  5  2  NM_141373.1  CG15596-RA (Osi11), mRNA 
0   0  1  4  7  NM_143409.1  CG11873-RA (CG11873), mRNA 
0   0  1  4  6  NM_079195.2  CG15002-RB (mas), mRNA 
0   0  1  4  4  NM_144208.1  CG15210-RA (CG15210), mRNA 
0   0  1  3  7  NM_143242.2  CG6420-RA (CG6420), mRNA 
0   0  1  3  5  NM_001042874.1  CG14034-RB (CG14034), mRNA 
0   0  1  3  2  NM_169531.1  CG9412-RD, transcript variant D (rin), mRNA 
0   0  1  3  2  NM_169530.1  CG9412-RC, transcript variant C (rin), mRNA 

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