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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 14541R-1 
 Symbol CG14541  Full Name CG14541 
 CG No CG14541  Old CG No CG14541 
 Synonyms CG14541 
 Accession No (Link to NCBI) NM_143195.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCTTGCAGATGAAGTTTGCCC 
 Primer Seq. 3'
aatctagaggtaccGATCGAGCCCGCTAAGGAAGT 
 Predicted Fragment Size
413 
 IR fragment full Seq
0001 CCTTGCAGAT GANAGTTTGC CCCTCGACAA TATATGACAA GTGCCACACA ACAACAGGAG 
0061 CAGCAGCAGC AACAATGACC AAGCAATTGA CAACGGCAAC TGCAACAAAT GCGGCATCTA 
0121 GCATAGGACA ACCGGGTGAT TTGGCCCCCA CAGTTATATC CCCAACCGCG CCATCCACAC 
0181 TAACGACGGG CGGAGCAGGA GGAGCCGGAG CAGGTGGAAC CATTTCACCT GTCAGCGAGG 
0241 CAACAAAGAC TGCGCCACCA CCACAACCCG TTGAGGAGAA GCCCTCGAGT AGCGATGCCA 
0301 GTGGCAGATC GGCGGCTCTG GAGCGTGCCT ATGTGCACGA TGTATACGAG CACTGTGAGG 
0361 AGCCAACGGG TCCCGTCCGA CCACGTATGG CCCACTTCCT TAGCGGGCTC GATC 
 in silico PCR Fragment
0001 CCTTGCAGAT GA-AGTTTGC CCCTCGACAA TATATGACAA GTGCAACACA ACAACAGGAG 
0061 CAGCAGCAGC AACAATGACC AAGCAATTGA CAACGGCAAC TGCAACAAAT GCGGCATCTA 
0121 GCATAGGACA ACCGGGTGAT TTGGCCCCCA CAGTTATATC CCCAACCGCG CCATCCACAC 
0181 TAACGACGGG CGGAGCAGGA GGAGCCGGAG CAGGTGGAAC CATTTCACCT GTCAGCGAGG 
0241 CAACAAAGAC TGCGCCACCA CCACAACCCG TTGAGGAGAA GCCCTCGAGT AGCGATGCCA 
0301 GTGGCAGATC GGCGGCTCTG GAGCGTGCCT ATGTGCACGA TGTATACGAG CACTGTGAGG 
0361 AGCCAACGGG TCCCGTCCGA CCACGTATGG CCCACTTCCT TAGCGGGCTC GATC 
 Assemble Data

14541R-1.IR_full       1   CCTTGCAGATGANAGTTTGCCCCTCGACAATATATGACAAGTGCCACACAACAACAGGAG 60
                           |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
14541R-1.in silico     1   CCTTGCAGATGA-AGTTTGCCCCTCGACAATATATGACAAGTGCAACACAACAACAGGAG 60


14541R-1.IR_full       61  CAGCAGCAGCAACAATGACCAAGCAATTGACAACGGCAACTGCAACAAATGCGGCATCTA 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14541R-1.in silico     61  CAGCAGCAGCAACAATGACCAAGCAATTGACAACGGCAACTGCAACAAATGCGGCATCTA 120


14541R-1.IR_full       121 GCATAGGACAACCGGGTGATTTGGCCCCCACAGTTATATCCCCAACCGCGCCATCCACAC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14541R-1.in silico     121 GCATAGGACAACCGGGTGATTTGGCCCCCACAGTTATATCCCCAACCGCGCCATCCACAC 180


14541R-1.IR_full       181 TAACGACGGGCGGAGCAGGAGGAGCCGGAGCAGGTGGAACCATTTCACCTGTCAGCGAGG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14541R-1.in silico     181 TAACGACGGGCGGAGCAGGAGGAGCCGGAGCAGGTGGAACCATTTCACCTGTCAGCGAGG 240


14541R-1.IR_full       241 CAACAAAGACTGCGCCACCACCACAACCCGTTGAGGAGAAGCCCTCGAGTAGCGATGCCA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14541R-1.in silico     241 CAACAAAGACTGCGCCACCACCACAACCCGTTGAGGAGAAGCCCTCGAGTAGCGATGCCA 300


14541R-1.IR_full       301 GTGGCAGATCGGCGGCTCTGGAGCGTGCCTATGTGCACGATGTATACGAGCACTGTGAGG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
14541R-1.in silico     301 GTGGCAGATCGGCGGCTCTGGAGCGTGCCTATGTGCACGATGTATACGAGCACTGTGAGG 360


14541R-1.IR_full       361 AGCCAACGGGTCCCGTCCGACCACGTATGGCCCACTTCCTTAGCGGGCTCGATC 414
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
14541R-1.in silico     361 AGCCAACGGGTCCCGTCCGACCACGTATGGCCCACTTCCTTAGCGGGCTCGATC 414

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   395  NM_143195.1  CG14541-RA (CG14541), mRNA 
1.77   30  103  356  NM_001038734.1  CG16902-RC (Hr4), mRNA 
1.77   10  14  36  NM_143148.1  CG5079-RA (CG5079), mRNA 
1.51   11  56  NM_140898.3  CG32217-RA (Su(Tpl)), mRNA 
0.75   16  71  199  NM_132288.1  CG15365-RA (CG15365), mRNA 
0.75   20  53  NM_142521.1  CG6026-RA (CG6026), mRNA 
0.5   25  81  NM_176312.2  CG33205-RA, transcript variant A (CG33205), mRNA 
0.5   25  81  NM_176308.2  CG33205-RB, transcript variant B (CG33205), mRNA 
0.5   25  81  NM_176309.2  CG33205-RC, transcript variant C (CG33205), mRNA 
0.5   46  156  NM_132413.1  CG15295-RA (CG15295), mRNA 
0.5   12  NM_164890.1  CG4839-RB, transcript variant B (CG4839), mRNA 
0.5   12  NM_135505.2  CG4839-RA, transcript variant A (CG4839), mRNA 
0.5   18  49  NM_137194.1  CG8179-RA (CG8179), mRNA 
0.5   12  34  NM_130677.1  CG14418-RA (CG14418), mRNA 
0.25   29  88  NM_176541.1  CG31158-RB, transcript variant B (CG31158), mRNA 
0.25   29  88  NM_170027.2  CG31158-RA, transcript variant A (CG31158), mRNA 
0.25   18  32  NM_057832.3  CG5393-RA, transcript variant A (apt), mRNA 
0.25   18  32  NM_166609.1  CG5393-RC, transcript variant C (apt), mRNA 
0.25   18  32  NM_166610.1  CG5393-RD, transcript variant D (apt), mRNA 
0.25   18  32  NM_166611.1  CG5393-RE, transcript variant E (apt), mRNA 
0.25   18  32  NM_057831.3  CG5393-RB, transcript variant B (apt), mRNA 
0.25   19  86  NM_080255.2  CG6889-RA, transcript variant A (tara), mRNA 
0.25   19  86  NM_169709.1  CG6889-RB, transcript variant B (tara), mRNA 
0.25   10  NM_080765.2  CG13777-RC, transcript variant C (milt), mRNA 
0.25   10  NM_164736.1  CG13777-RA, transcript variant A (milt), mRNA 
0.25   10  NM_164738.1  CG13777-RB, transcript variant B (milt), mRNA 
0.25   11  NM_132942.2  CG4829-RC, transcript variant C (CG4829), mRNA 
0.25   11  NM_167549.1  CG4829-RA, transcript variant A (CG4829), mRNA 
0.25   11  NM_167550.1  CG4829-RB, transcript variant B (CG4829), mRNA 
0.25   NM_136081.2  CG10641-RA (CG10641), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
+- 
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
DC
++ 
DM
VM
 
VB
 
Dcompartment   Penetrance
     

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