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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 13387R-4 
 Symbol emb  Full Name embargoed 
 CG No CG13387  Old CG No CG13387 
 Synonyms crm1, CRM1, Crm1, dCRM1, l(2)k16715, CG13387, emb 
 Accession No (Link to NCBI) NM_164818.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Chan WM, Tsoi H, Wu CC, Wong CH, Cheng TC, Li HY, Lau KF, Shaw PC, Perrimon N, Chan HY.
Expanded polyglutamine domain possesses nuclear export activity which modulates subcellular localization and toxicity of polyQ disease protein via exportin-1.
Hum Mol Genet (2011) 20(9) 1738-50 [ PubMed ID = 21300695 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATGTTGACATCGGACGAGGCG 
 Primer Seq. 3'
aatctagaggtaccCCTCACTAAGGTTCTTCAGGA 
 Predicted Fragment Size
511 
 IR fragment full Seq
0001 ATGTTGACAT CGGACGAGGC GGGCAAGCTG CTCGACTTCT CCCAGAAGCT GGACATTAAT 
0061 CTGCTGGACA AGATCGTCGA GGTTGTGTAC ACAGCGCAGG GCGAGCAGTT GCGTNCTAGC 
0121 CCAGAGCATA CTGACCACGC TGAAGGAGCA TCCAGAGGCA TGGACGCGGG TGGACAGCAT 
0181 ATTGGAGTAC TCACAGAACC AGCGGACCAA GTTTTATGCT CTGCAAATCC TCGAGGAGGT 
0241 CATCAAAACG CGCTGGANAG GTCCTGCCGC GCAACCAGTG CGAGGGAATC AAGAAGTATG 
0301 TGGTCAGTCT TATCATCAAG ACCTCGTCGG ATCCCATTGT TATGGAGCAG AACAAAGTGT 
0361 ATCTGAATAA GCTAAACATG ATTCTGGTCC ACATTCTAAA GCGCGAATGG CCACGCAACT 
0421 GGGAGACATT CATCAGTGAC ATTGTCGGTG CGTCGAAAAC GAACGAGAGC CTGTGCATGA 
0481 ACAACATGGT AATCCTGAAG AACCTTAGTG AGG 
 in silico PCR Fragment
0001 ATGTTGACAT CGGACGAGGC GGGCAAGCTG CTCGACTTCT CCCAGAAGCT GGACATTAAT 
0061 CTGCTGGACA AGATCGTCGA GGTTGTGTAC ACAGCGCAGG GCGAGCAGTT GCGT-CTAGC 
0121 CCAGAGCATA CTGACCACGC TGAAGGAGCA TCCAGAGGCA TGGACGCGGG TGGACAGCAT 
0181 ATTGGAGTAC TCACAGAACC AGCGGACCAA GTTTTATGCT CTGCAAATCC TCGAGGAGGT 
0241 CATCAAAACG CGCTGGA-AG GTCCTGCCGC GCAACCAGTG CGAGGGAATC AAGAAGTATG 
0301 TGGTCAGTCT TATCATCAAG ACCTCGTCGG ATCCCATTGT TATGGAGCAG AACAAAGTGT 
0361 ATCTGAATAA GCTAAACATG ATTCTGGTCC ACATTCTAAA GCGCGAATGG CCACGCAACT 
0421 GGGAGACATT CATCAGTGAC ATTGTCGGTG CGTCGAAAAC GAACGAGAGC CTGTGCATGA 
0481 ACAACATGGT AATCCTGAAG AACCTTAGTG AGG 
 Assemble Data

13387R-4.IR_full       1   ATGTTGACATCGGACGAGGCGGGCAAGCTGCTCGACTTCTCCCAGAAGCTGGACATTAAT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13387R-4.in silico     1   ATGTTGACATCGGACGAGGCGGGCAAGCTGCTCGACTTCTCCCAGAAGCTGGACATTAAT 60


13387R-4.IR_full       61  CTGCTGGACAAGATCGTCGAGGTTGTGTACACAGCGCAGGGCGAGCAGTTGCGTNCTAGC 120
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
13387R-4.in silico     61  CTGCTGGACAAGATCGTCGAGGTTGTGTACACAGCGCAGGGCGAGCAGTTGCGT-CTAGC 120


13387R-4.IR_full       121 CCAGAGCATACTGACCACGCTGAAGGAGCATCCAGAGGCATGGACGCGGGTGGACAGCAT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13387R-4.in silico     121 CCAGAGCATACTGACCACGCTGAAGGAGCATCCAGAGGCATGGACGCGGGTGGACAGCAT 180


13387R-4.IR_full       181 ATTGGAGTACTCACAGAACCAGCGGACCAAGTTTTATGCTCTGCAAATCCTCGAGGAGGT 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13387R-4.in silico     181 ATTGGAGTACTCACAGAACCAGCGGACCAAGTTTTATGCTCTGCAAATCCTCGAGGAGGT 240


13387R-4.IR_full       241 CATCAAAACGCGCTGGANAGGTCCTGCCGCGCAACCAGTGCGAGGGAATCAAGAAGTATG 300
                           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
13387R-4.in silico     241 CATCAAAACGCGCTGGA-AGGTCCTGCCGCGCAACCAGTGCGAGGGAATCAAGAAGTATG 300


13387R-4.IR_full       301 TGGTCAGTCTTATCATCAAGACCTCGTCGGATCCCATTGTTATGGAGCAGAACAAAGTGT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13387R-4.in silico     301 TGGTCAGTCTTATCATCAAGACCTCGTCGGATCCCATTGTTATGGAGCAGAACAAAGTGT 360


13387R-4.IR_full       361 ATCTGAATAAGCTAAACATGATTCTGGTCCACATTCTAAAGCGCGAATGGCCACGCAACT 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13387R-4.in silico     361 ATCTGAATAAGCTAAACATGATTCTGGTCCACATTCTAAAGCGCGAATGGCCACGCAACT 420


13387R-4.IR_full       421 GGGAGACATTCATCAGTGACATTGTCGGTGCGTCGAAAACGAACGAGAGCCTGTGCATGA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13387R-4.in silico     421 GGGAGACATTCATCAGTGACATTGTCGGTGCGTCGAAAACGAACGAGAGCCTGTGCATGA 480


13387R-4.IR_full       481 ACAACATGGTAATCCTGAAGAACCTTAGTGAGG 513
                           |||||||||||||||||||||||||||||||||
13387R-4.in silico     481 ACAACATGGTAATCCTGAAGAACCTTAGTGAGG 513

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   493  NM_164818.1  CG13387-RA (emb), mRNA 
0.2   NM_167641.1  CG14195-RA (CG14195), mRNA 
0.2   NM_138055.1  CG30419-RA (CG30419), mRNA 
0.2   NM_140581.2  CG5222-RA (CG5222), mRNA 
0.2   NM_142051.2  CG9345-RA (Adgf-C), mRNA 
0   NM_001043126.1  CG34158-RD, transcript variant D (SP2523), mRNA 
0   NM_167035.1  CG4165-RB, transcript variant B (CG4165), mRNA 
0   NM_167036.1  CG4165-RC, transcript variant C (CG4165), mRNA 
0   NM_131992.2  CG4165-RA, transcript variant A (CG4165), mRNA 
0   NM_167037.1  CG4165-RD, transcript variant D (CG4165), mRNA 
0   NM_001043125.1  CG34158-RC, transcript variant C (SP2523), mRNA 
0   NM_167069.1  CG15891-RA, transcript variant A (CG15891), mRNA 
0   NM_001031869.1  CG15892-RB, transcript variant B (CG15892), mRNA 
0   NM_167624.1  CG6335-RA, transcript variant A (Aats-his), mRNA 
0   NM_133077.1  CG6335-RB, transcript variant B (Aats-his), mRNA 
0   NM_135766.2  CG16974-RA (CG16974), mRNA 
0   NM_132724.2  CG1810-RA (mRNA-capping-enzyme), mRNA 
0   NM_132070.1  CG3599-RA (CG3599), mRNA 
0   11  NM_139399.1  CG13921-RA, transcript variant A (CG13921), mRNA 
0   11  NM_206235.1  CG13921-RB, transcript variant B (CG13921), mRNA 
0   11  NM_165169.3  CG5996-RB, transcript variant B (trpgamma), mRNA 
0   11  NM_135958.3  CG5996-RA, transcript variant A (trpgamma), mRNA 
0   NM_001014750.1  CG7826-RD, transcript variant D (mnb), mRNA 
0   NM_170658.2  CG7826-RC, transcript variant C (mnb), mRNA 
0   NM_167581.2  CG7826-RA, transcript variant A (mnb), mRNA 
0   NM_135219.2  CG11329-RA (CG11329), mRNA 
0   NM_001032051.1  CG33715-RD, transcript variant D (Msp-300), mRNA 
0   NM_080535.2  CG9774-RA (rok), mRNA 
0   NM_135170.3  CG9497-RA (CG9497), mRNA 
0   NM_168325.2  CG4347-RC, transcript variant C (UGP), mRNA 

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