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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 13271R-1 
 Symbol Ugt36Bb  Full Name Ugt36Bb 
 CG No CG13271  Old CG No CG13271 
 Synonyms CG13271, AC 005121B, Ugt36Bb 
 Accession No (Link to NCBI) NM_144371.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTCTGAGCACGATGACCCAAAG 
 Primer Seq. 3'
aatctagaggtaccTACCCACAATGGTGTCCATGA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TCTGAGCACG ATGACCCAAA GCAGTGGTGG AGCCAATATA TTGGGAGTTT TCGGAACACA 
0061 CAGTCCTTCG CACGTGATCG TGCATATGGC TGTGATGAAA GCCCTTGCTG ATCGAGGTCA 
0121 CAACATTACA GTGGTGACCC AGATGAAACC GAAATTGGCG ACACATGAAA ATATTACCGT 
0181 GATCATTGCA CCGCCGACGG AGGAGAGACA TAGATATATC AAAGAATATA TGGCTGAGGT 
0241 ATCTAATGAG AAACCTTCGT TCTGGGAGAC CATGGTCAAG GCGATCGTCC AATCTTCCAA 
0301 TCAACTGGAA GGACAATATG AGTTTATGAC GCATCCCAAT GTCAAAGAGA TCTACGAGAA 
0361 TCCAAAGATC AAATTCGATT TGGTGTTTTT GGGATTGATG GCCAACACCT ATCAGTTGGG 
0421 CATTGCTGCC AAGTTGAAAT GTCCGGTCAT TATATCGTGG GTGGGCATTC CGCTGCCCTT 
0481 CATGGACACC ATTGTGGGTA  
 in silico PCR Fragment
0001 TCTGAGCACG ATGACCCAAA GCAGTGGTGG AGCCAATATA TTGGGAGTTT TCGGAACACA 
0061 CAGTCCTTCG CACGTGATCG TGCATATGGC TGTGATGAAA GCCCTTGCTG ATCGAGGTCA 
0121 CAACATTACA GTGGTGACCC AGATGAAACC GAAATTGGCG ACACATGAAA ATATTACCGT 
0181 GATCATTGCA CCGCCGACGG AGGAGAGACA GAGATATATC AAAGAATATA TGGCTGAGGT 
0241 ATCTAATGAG AAACCTTCGT TCTGGGAGAC CATGGTCAAG GCGATCGTCC AATCTTCCAA 
0301 TCAACTGGAA GGACAATATG AGTTTATGAC GCATCCCAAT GTCAAAGAGA TCTACGAGAA 
0361 TCCAAAGATC AAATTCGATT TGGTGTTTTT GGGATTGATG GCCAACACCT ATCAGTTGGG 
0421 CATTGCTGCC AAGTTGAAAT GTCCGGTCAT TATATCGTGG GTGGGCATTC CGCTGCCCTT 
0481 CATGGACACC ATTGTGGGTA  
 Assemble Data

13271R-1.IR_full       1   TCTGAGCACGATGACCCAAAGCAGTGGTGGAGCCAATATATTGGGAGTTTTCGGAACACA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13271R-1.in silico     1   TCTGAGCACGATGACCCAAAGCAGTGGTGGAGCCAATATATTGGGAGTTTTCGGAACACA 60


13271R-1.IR_full       61  CAGTCCTTCGCACGTGATCGTGCATATGGCTGTGATGAAAGCCCTTGCTGATCGAGGTCA 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13271R-1.in silico     61  CAGTCCTTCGCACGTGATCGTGCATATGGCTGTGATGAAAGCCCTTGCTGATCGAGGTCA 120


13271R-1.IR_full       121 CAACATTACAGTGGTGACCCAGATGAAACCGAAATTGGCGACACATGAAAATATTACCGT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13271R-1.in silico     121 CAACATTACAGTGGTGACCCAGATGAAACCGAAATTGGCGACACATGAAAATATTACCGT 180


13271R-1.IR_full       181 GATCATTGCACCGCCGACGGAGGAGAGACATAGATATATCAAAGAATATATGGCTGAGGT 240
                           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
13271R-1.in silico     181 GATCATTGCACCGCCGACGGAGGAGAGACAGAGATATATCAAAGAATATATGGCTGAGGT 240


13271R-1.IR_full       241 ATCTAATGAGAAACCTTCGTTCTGGGAGACCATGGTCAAGGCGATCGTCCAATCTTCCAA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13271R-1.in silico     241 ATCTAATGAGAAACCTTCGTTCTGGGAGACCATGGTCAAGGCGATCGTCCAATCTTCCAA 300


13271R-1.IR_full       301 TCAACTGGAAGGACAATATGAGTTTATGACGCATCCCAATGTCAAAGAGATCTACGAGAA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13271R-1.in silico     301 TCAACTGGAAGGACAATATGAGTTTATGACGCATCCCAATGTCAAAGAGATCTACGAGAA 360


13271R-1.IR_full       361 TCCAAAGATCAAATTCGATTTGGTGTTTTTGGGATTGATGGCCAACACCTATCAGTTGGG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13271R-1.in silico     361 TCCAAAGATCAAATTCGATTTGGTGTTTTTGGGATTGATGGCCAACACCTATCAGTTGGG 420


13271R-1.IR_full       421 CATTGCTGCCAAGTTGAAATGTCCGGTCATTATATCGTGGGTGGGCATTCCGCTGCCCTT 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13271R-1.in silico     421 CATTGCTGCCAAGTTGAAATGTCCGGTCATTATATCGTGGGTGGGCATTCCGCTGCCCTT 480


13271R-1.IR_full       481 CATGGACACCATTGTGGGTA 500
                           ||||||||||||||||||||
13271R-1.in silico     481 CATGGACACCATTGTGGGTA 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_144371.1  CG13271-RA (Ugt36Bb), mRNA 
0   NM_057664.4  CG15444-RB, transcript variant B (ine), mRNA 
0   NM_175959.1  CG15444-RD, transcript variant D (ine), mRNA 
0   NM_175958.1  CG15444-RC, transcript variant C (ine), mRNA 
0   NM_057665.3  CG15444-RA, transcript variant A (ine), mRNA 
0   NM_142432.2  CG7985-RA (CG7985), mRNA 
0   NM_169507.1  CG8784-RA (CG8784), mRNA 
0   NM_142371.1  CG14330-RA (CG14330), mRNA 
0   NM_206339.1  CG11658-RB, transcript variant B (CG11658), mRNA 
0   NM_206338.1  CG11658-RC, transcript variant C (CG11658), mRNA 
0   NM_140241.2  CG11658-RA, transcript variant A (CG11658), mRNA 
0   NM_206336.1  CG11658-RE, transcript variant E (CG11658), mRNA 
0   NM_206337.1  CG11658-RD, transcript variant D (CG11658), mRNA 
0   NM_134845.1  CG18559-RA (Cyp309a2), mRNA 
0   NM_057797.2  CG10387-RA (tos), mRNA 
0   NM_079066.2  CG15110-RA (botv), mRNA 
0   NM_057220.3  CG17610-RA (grk), mRNA 
0   NM_132969.2  CG8918-RA (CG8918), mRNA 
0   NM_079339.2  CG8937-RA, transcript variant A (Hsc70-1), mRNA 
0   NM_168568.2  CG8937-RC, transcript variant C (Hsc70-1), mRNA 
0   NM_001014545.1  CG33519-RB (Unc-89), mRNA 
0   NM_057511.3  CG3936-RA (N), mRNA 
0   NM_058149.3  CG3352-RA (ft), mRNA 
0   NM_167161.1  CG2056-RB, transcript variant B (CG2056), mRNA 
0   NM_132264.2  CG2056-RA, transcript variant A (CG2056), mRNA 
0   11  NM_136154.1  CG10631-RA (CG10631), mRNA 
0   NM_137093.4  CG30069-RA (CG30069), mRNA 
0   NM_166992.2  CG2904-RA (ec), mRNA 
0   NM_205952.1  CG4128-RD, transcript variant D (nAcRalpha-30D), mRNA 
0   NM_205951.1  CG4128-RB, transcript variant B (nAcRalpha-30D), mRNA 

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