Notice:
|
Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
|
|
NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
discarded
|
Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
13116R-3 |
Symbol |
CG13116 |
Full Name |
CG13116 |
CG No |
CG13116 |
Old CG No |
CG13116 |
Synonyms |
CG13116 |
Accession No (Link to NCBI) |
NM_135462.2 |
Inserted Chr. |
lll |
Insertional Mutation |
|
Phenotype induced by Act5C-GAL4 at 28 degrees |
semi-lethal |
Map Viewer |
|
Reference
[Please submit your publication]
|
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
|
Comment |
|
Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgTCGAGCTGATCACGGTGCTGG |
Primer Seq. 3' |
aatctagaggtaccCCTCAAGCTGGGACTCGGACT |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 TCGAGCTGAT CACGGTGCTG GTGTATTGGG TGATCATCAC GCCCACCACC TACAAGTACT
0061 GCACACAAAA CGGAATAATC AGGATGAGCT TTGACACCCT GGTGGGCACT GTGGGCGATC
0121 ACTGCACCCT GGCCCTCTGC CTGATGATCG GATATGTTGT CTTCTACCGT ATCATTATCT
0181 TCATTTACAT GAAGTTGAAG GTCTGTGACA TTCGGATGTG GGATGAACTG CAGCGAGCCA
0241 AAGAGGATCC GGAGGCGCAT TTGGACAAAA AGTCCTACTA CCAGCCCGTC TCCACCGAGA
0301 ATATCGATGT CGTGGACTCT GGCAAGAAGA AGAACAAGCC AACGACCCCG AAGATGATAA
0361 GAACCATCAG CAATCCGCTG CTTATCGAAA GCGATCTGGC GCGCATTCAC ATCAAGCACG
0421 AAACACGGCC TTTGGAAAGT GCCACCCTAC CCAGGCTGCA GCAGGCAATG GTCCACCCTA
0481 GTCCGAGTCC CAGCTTGAGG |
in silico PCR Fragment |
0001 TCGAGCTGAT CACGGTGCTG GTGTATTGGG TGATCATCAC GCCCACCACC TACAAGTACT
0061 GCACACAAAA CGGAATAATT AGGATGAGCT TTGACACCCT GGTTGGCACT GTGGGCGATC
0121 ACTGCACCCT GGCCCTCTGC CTGATGATCG GATACGTTGT CTTCTACCGT ATCATTATCT
0181 TCATTTACAT GAAGTTGAAG GTCTGTGACA TTCGGATGTG GGATGAACTG CAGCGAGCCA
0241 AAGAGGATCC GGAGGCGCAT CTGGACAAAA AGTCCTACTA CCAGCCCGTC TCCACCGAGA
0301 ATATCGATGT CGTGGACTCT GGCAAGAAGA AGAACAAGCC AACGACTCCG AAGATGATAA
0361 GGACCATCAG CAATCCGCTG CTCATCGAAA GCGATCTGGC GCGCATTCAC ATCAAGCACG
0421 AAACACGGCC TTTGGAAAGT GCCACCCTAC CCAGACTGCA GCAGGCAATG GTCCACCCTA
0481 GTCCGAGTCC CAGCTTGAGG |
Assemble Data |
13116R-3.IR_full 1 TCGAGCTGATCACGGTGCTGGTGTATTGGGTGATCATCACGCCCACCACCTACAAGTACT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13116R-3.in silico 1 TCGAGCTGATCACGGTGCTGGTGTATTGGGTGATCATCACGCCCACCACCTACAAGTACT 60
13116R-3.IR_full 61 GCACACAAAACGGAATAATCAGGATGAGCTTTGACACCCTGGTGGGCACTGTGGGCGATC 120
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
13116R-3.in silico 61 GCACACAAAACGGAATAATTAGGATGAGCTTTGACACCCTGGTTGGCACTGTGGGCGATC 120
13116R-3.IR_full 121 ACTGCACCCTGGCCCTCTGCCTGATGATCGGATATGTTGTCTTCTACCGTATCATTATCT 180
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
13116R-3.in silico 121 ACTGCACCCTGGCCCTCTGCCTGATGATCGGATACGTTGTCTTCTACCGTATCATTATCT 180
13116R-3.IR_full 181 TCATTTACATGAAGTTGAAGGTCTGTGACATTCGGATGTGGGATGAACTGCAGCGAGCCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
13116R-3.in silico 181 TCATTTACATGAAGTTGAAGGTCTGTGACATTCGGATGTGGGATGAACTGCAGCGAGCCA 240
13116R-3.IR_full 241 AAGAGGATCCGGAGGCGCATTTGGACAAAAAGTCCTACTACCAGCCCGTCTCCACCGAGA 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
13116R-3.in silico 241 AAGAGGATCCGGAGGCGCATCTGGACAAAAAGTCCTACTACCAGCCCGTCTCCACCGAGA 300
13116R-3.IR_full 301 ATATCGATGTCGTGGACTCTGGCAAGAAGAAGAACAAGCCAACGACCCCGAAGATGATAA 360
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
13116R-3.in silico 301 ATATCGATGTCGTGGACTCTGGCAAGAAGAAGAACAAGCCAACGACTCCGAAGATGATAA 360
13116R-3.IR_full 361 GAACCATCAGCAATCCGCTGCTTATCGAAAGCGATCTGGCGCGCATTCACATCAAGCACG 420
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
13116R-3.in silico 361 GGACCATCAGCAATCCGCTGCTCATCGAAAGCGATCTGGCGCGCATTCACATCAAGCACG 420
13116R-3.IR_full 421 AAACACGGCCTTTGGAAAGTGCCACCCTACCCAGGCTGCAGCAGGCAATGGTCCACCCTA 480
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
13116R-3.in silico 421 AAACACGGCCTTTGGAAAGTGCCACCCTACCCAGACTGCAGCAGGCAATGGTCCACCCTA 480
13116R-3.IR_full 481 GTCCGAGTCCCAGCTTGAGG 500
||||||||||||||||||||
13116R-3.in silico 481 GTCCGAGTCCCAGCTTGAGG 500
|
Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
4 |
NM_135462.2 |
CG13116-RA (CG13116), mRNA |
0.2 |
1 |
3 |
2 |
4 |
NM_080325.3 |
CG6450-RC (lva), mRNA |
0.2 |
1 |
3 |
2 |
3 |
NM_132004.2 |
CG4136-RA (CG4136), mRNA |
0 |
0 |
2 |
7 |
2 |
NM_136274.2 |
CG2225-RC, transcript variant C (CG2225), mRNA |
0 |
0 |
2 |
7 |
2 |
NM_206020.2 |
CG2225-RE, transcript variant E (CG2225), mRNA |
0 |
0 |
2 |
7 |
2 |
NM_165392.2 |
CG2225-RA, transcript variant A (CG2225), mRNA |
0 |
0 |
2 |
7 |
2 |
NM_165393.2 |
CG2225-RB, transcript variant B (CG2225), mRNA |
0 |
0 |
2 |
7 |
2 |
NM_001014497.1 |
CG2225-RF, transcript variant F (CG2225), mRNA |
0 |
0 |
2 |
6 |
7 |
NM_169810.1 |
CG18617-RA, transcript variant A (Vha100-2), mRNA |
0 |
0 |
2 |
6 |
7 |
NM_142465.1 |
CG18617-RB, transcript variant B (Vha100-2), mRNA |
0 |
0 |
2 |
3 |
3 |
NM_142354.1 |
CG4090-RA (CG4090), mRNA |
0 |
0 |
2 |
3 |
2 |
NM_136758.2 |
CG12309-RA (CG12309), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_141178.3 |
CG12581-RA, transcript variant A (CG12581), mRNA |
0 |
0 |
2 |
2 |
3 |
NM_164313.1 |
CG12581-RB, transcript variant B (CG12581), mRNA |
0 |
0 |
2 |
2 |
2 |
NM_136864.2 |
CG13185-RA (CG13185), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_136699.3 |
CG12128-RA, transcript variant A (CG12128), mRNA |
0 |
0 |
1 |
4 |
3 |
NM_206068.1 |
CG12128-RB, transcript variant B (CG12128), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_058040.3 |
CG10372-RA (Faf), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_137412.2 |
CG6406-RB, transcript variant B (CG6406), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_166247.1 |
CG6406-RA, transcript variant A (CG6406), mRNA |
0 |
0 |
1 |
2 |
5 |
NM_139522.1 |
CG14964-RA (CG14964), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_176583.1 |
CG11500-RA (Spase12), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_143436.1 |
CG2006-RA (CG2006), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_137983.3 |
CG9850-RA, transcript variant A (CG9850), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_080250.2 |
CG6224-RA (dbo), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_167921.1 |
CG12024-RB, transcript variant B (CG12024), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_139413.2 |
CG12024-RA, transcript variant A (CG12024), mRNA |
0 |
0 |
1 |
2 |
2 |
NM_132006.1 |
CG17763-RA (CG17763), mRNA |
0 |
0 |
0 |
5 |
13 |
NM_131944.1 |
CG3546-RA (CG3546), mRNA |
0 |
0 |
0 |
5 |
8 |
NM_140150.2 |
CG32067-RC, transcript variant C (simj), mRNA |
|
Wing Disc |
GFP
|
Puc
|
Caspase
|
DAPI
|
Merge
|
Figure
|
JNK signal
|
Caspase-3 signal
|
|
|
|
|