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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 12996R-2 
 Symbol CG12996  Full Name CG12996 
 CG No CG12996  Old CG No CG12996 
 Synonyms CG12996 
 Accession No (Link to NCBI) NM_132982.1 
 Inserted Chr. ll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Cho Y, Lai CM, Lin KY, Hsu HJ.
A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.
G3 (Bethesda) (2018) 8(7) 2345-2354 [ PubMed ID = 29764959 ] [ RRC reference ]

Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTGTGGCCATGCGTGACCTCAA 
 Primer Seq. 3'
aatctagaggtaccCCTCTTCCTCCCCCAAACTGC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TGTGGCCATG CGTGACCTCN AGNNGCgCCT CTTCGATCTG CTGCGCTCCG GcGGCAACAA 
0061 CAACAGCAGC AGCAGCAACA ACAGCGGCAG CAACGGCTgC AACAGCAACA CGAACAACAG 
0121 CAGCAATTCG CATCAGAACA AGTCGAACAA TCAGCAAACA TACGCGCCGC CCGCCCACAA 
0181 ACCGAAGAAA CTGCACGAGT ACACGGCCGC CGATTGCAAT GCGGCATTCC TGCGGAAATA 
0241 CCACGACCTC AGCATTAGCA GGGATCGGGA AATGGACAGG GATCGGGAGC GGGATCGAGA 
0301 GCGGGAGAGG GCTGGACCCG GTCAGGTGCA GTCGCCCAAT GTGATCTACT TCAACGAGAA 
0361 CCTGTCGATG GCCAGCAAAT ACAATGTGCG ACCCTTTCCG CTCGCCCGCT ATCCCTCGTG 
0421 TCCGTTGAGC AGCTTCGGCC TCTCGCCGGG ATCCGGACGC CCGGAGGGCA GTGCCGGCAG 
0481 CAGTTTGGGG GAGGAAGAGG  
 in silico PCR Fragment
0001 TGTGGCCATG CGTGACCTCA AGCAGCGCCT CTTCGATCTG CTGCGCTCCG GCGGCAACAA 
0061 CAACAGCAGC AGCAGCAACA ACAGCGGCAG CAACGGCTGC AACAGCAACA CGAACAACAG 
0121 CAGCAATTCG CATCAGAACA AGTCGAACAA TCAGCAAACA TACGCGCCGC CCGCCCACAA 
0181 ACCGAAGAAA CTGCACGAGT ACACGGCCGC CGATTGCAAT GCGGCATTCC TGCGGAAATA 
0241 CCACGACCTC AGCATTAGCA GGGATCGGGA AATGGACAGG GATCGGGAGC GAGATCGAGA 
0301 GCGGGAGAGG GCTGGACCCG GTCAGGTGCA GTCGCCCAAT GTGATCTACT TCAACGAGAA 
0361 CCTGTCGATG GCCAGCAAAT ACAATGTGCG ACCCTTTCCG CTCGCCCGCT ATCCCTCGTG 
0421 TCCGTTGAGC AGCTTCGGCC TCTCGCCGGG ATCCGGACGC CCGGAGGGCA GTGCCGGCAG 
0481 CAGTTTGGGG GAGGAAGAGG  
 Assemble Data

12996R-2.IR_full       1   TGTGGCCATGCGTGACCTCNAGNNGCGCCTCTTCGATCTGCTGCGCTCCGGCGGCAACAA 60
                           ||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||
12996R-2.in silico     1   TGTGGCCATGCGTGACCTCAAGCAGCGCCTCTTCGATCTGCTGCGCTCCGGCGGCAACAA 60


12996R-2.IR_full       61  CAACAGCAGCAGCAGCAACAACAGCGGCAGCAACGGCTGCAACAGCAACACGAACAACAG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12996R-2.in silico     61  CAACAGCAGCAGCAGCAACAACAGCGGCAGCAACGGCTGCAACAGCAACACGAACAACAG 120


12996R-2.IR_full       121 CAGCAATTCGCATCAGAACAAGTCGAACAATCAGCAAACATACGCGCCGCCCGCCCACAA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12996R-2.in silico     121 CAGCAATTCGCATCAGAACAAGTCGAACAATCAGCAAACATACGCGCCGCCCGCCCACAA 180


12996R-2.IR_full       181 ACCGAAGAAACTGCACGAGTACACGGCCGCCGATTGCAATGCGGCATTCCTGCGGAAATA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12996R-2.in silico     181 ACCGAAGAAACTGCACGAGTACACGGCCGCCGATTGCAATGCGGCATTCCTGCGGAAATA 240


12996R-2.IR_full       241 CCACGACCTCAGCATTAGCAGGGATCGGGAAATGGACAGGGATCGGGAGCGGGATCGAGA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
12996R-2.in silico     241 CCACGACCTCAGCATTAGCAGGGATCGGGAAATGGACAGGGATCGGGAGCGAGATCGAGA 300


12996R-2.IR_full       301 GCGGGAGAGGGCTGGACCCGGTCAGGTGCAGTCGCCCAATGTGATCTACTTCAACGAGAA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12996R-2.in silico     301 GCGGGAGAGGGCTGGACCCGGTCAGGTGCAGTCGCCCAATGTGATCTACTTCAACGAGAA 360


12996R-2.IR_full       361 CCTGTCGATGGCCAGCAAATACAATGTGCGACCCTTTCCGCTCGCCCGCTATCCCTCGTG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12996R-2.in silico     361 CCTGTCGATGGCCAGCAAATACAATGTGCGACCCTTTCCGCTCGCCCGCTATCCCTCGTG 420


12996R-2.IR_full       421 TCCGTTGAGCAGCTTCGGCCTCTCGCCGGGATCCGGACGCCCGGAGGGCAGTGCCGGCAG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12996R-2.in silico     421 TCCGTTGAGCAGCTTCGGCCTCTCGCCGGGATCCGGACGCCCGGAGGGCAGTGCCGGCAG 480


12996R-2.IR_full       481 CAGTTTGGGGGAGGAAGAGG 500
                           ||||||||||||||||||||
12996R-2.in silico     481 CAGTTTGGGGGAGGAAGAGG 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  26  64  NM_132982.1  CG12996-RA (CG12996), mRNA 
9.33   45  312  1065  2339  NM_080536.2  CG4013-RA, transcript variant A (Smr), mRNA 
9.33   45  312  1065  2339  NM_167334.1  CG4013-RB, transcript variant B (Smr), mRNA 
9.33   45  312  1065  2339  NM_167335.1  CG4013-RC, transcript variant C (Smr), mRNA 
7.88   38  83  232  519  NM_139799.3  CG10107-RA, transcript variant A (CG10107), mRNA 
7.88   38  83  232  519  NM_206286.1  CG10107-RC, transcript variant C (CG10107), mRNA 
6.84   33  179  392  966  NM_168571.2  CG32133-RA (CG32133), mRNA 
6.63   32  68  179  350  NM_079939.2  CG5580-RA, transcript variant A (sbb), mRNA 
6.01   29  108  181  422  NM_137690.2  CG10543-RA, transcript variant A (CG10543), mRNA 
6.01   29  108  165  369  NM_176241.1  CG10543-RC, transcript variant C (CG10543), mRNA 
6.01   29  108  165  369  NM_166416.1  CG10543-RB, transcript variant B (CG10543), mRNA 
5.39   26  59  160  315  NM_168412.1  CG32062-RD, transcript variant D (CG32062), mRNA 
5.39   26  59  160  315  NM_168413.1  CG32062-RB, transcript variant B (CG32062), mRNA 
5.18   25  113  454  976  NM_166030.1  CG8118-RB, transcript variant B (mam), mRNA 
5.18   25  113  454  976  NM_080376.1  CG8118-RA, transcript variant A (mam), mRNA 
4.97   24  86  223  505  NM_132246.2  CG10555-RA (CG10555), mRNA 
4.56   22  136  373  829  NM_135077.2  CG14023-RA (CG14023), mRNA 
4.56   22  136  291  720  NM_079903.2  CG15319-RB (nej), mRNA 
4.35   21  94  145  433  NM_176557.1  CG33106-RB, transcript variant B (mask), mRNA 
4.35   21  94  145  433  NM_176556.1  CG33106-RA, transcript variant A (mask), mRNA 
4.35   21  84  188  372  NM_166992.2  CG2904-RA (ec), mRNA 
4.35   21  76  314  707  NM_078797.2  CG13109-RA (tai), mRNA 
4.14   20  98  208  467  NM_168179.1  CG32394-RA (CG32394), mRNA 
4.14   20  85  216  424  NM_140402.2  CG17689-RA, transcript variant A (CG17689), mRNA 
4.14   20  35  120  270  NM_167330.2  CG17762-RD, transcript variant D (tomosyn), mRNA 
3.94   19  114  214  458  NM_169258.1  CG9755-RA, transcript variant A (pum), mRNA 
3.94   19  114  214  458  NM_169259.1  CG9755-RD, transcript variant D (pum), mRNA 
3.94   19  114  214  458  NM_079561.2  CG9755-RC, transcript variant C (pum), mRNA 
3.94   19  76  188  455  NM_078592.2  CG11172-RA (NFAT), mRNA 
3.73   18  69  123  257  NM_057489.3  CG4722-RA (bib), mRNA 

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