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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 12911R-2 
 Symbol CG12911  Full Name CG12911 
 CG No CG12911  Old CG No CG12911 
 Synonyms CG12911 
 Accession No (Link to NCBI) NM_136724.1 
 Inserted Chr.
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTTGATATCCTGCCTGACGCTG 
 Primer Seq. 3'
aatctagaggtaccCGATCGTAGTAGCGATCTCTG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 TTGATATCCT GCCTGACGCT GCTCGTCTGT GTCCAGGCAG CGGTGACAGG GCCGGAAGCT 
0061 CGATCCAGTG TGGACGCCAA GGATCAGCAG CTGGCTACAG CGAGCGTTGG AATCCTCGAC 
0121 TCCGTGCTCC GAGGAAAGAG CCGCCAGTCG CGGTGCGTGA GATGCTACGA GGATCGGGAT 
0181 CGTGATAGGT ACTACAGCGG ATACTCCAGT CGAACGGGCG ACGATATGCG AGGTAGTGCC 
0241 TGGTACTACT CCGGCTACGA TGATCGCAGC AGGGATCGGG ACTACGATCG CTACTACGAT 
0301 CGCTCCCGTT ATTACGAAGA TCGCTATACT CCGAGAACAT ACGACCGCTA TGAGGGTCGT 
0361 GGCTATGATG ATTATAGAAG GGGATCTGCG TATGGAGGAT CATACGATCG GNGAACGCGG 
0421 ATATGGATAC GACAACCGGG NATCGGTACT ACAGTGGTGA TCGCTACAGC GAGGGGTCAT 
0481 CCAGAGATCG CTACTACGAT CG 
 in silico PCR Fragment
0001 TTGATATCCT GCCTGACGCT GCTCGTCTGT GTCCAGGCAG CGGTGACAGG GCCGGAAGCT 
0061 CGATCCAGTG TGGACGCCAA GGATCAGCAG CTGGCTACAG CGAGTGTTGG AATCCTCGAC 
0121 TCCGTGCTTC GAGGAAAGAG CCGCCAGTCG CGGTGCGTGA GATGCTACGA GGATCGGGAT 
0181 CGTGATAGGT ACTACAGCGG ATACTCCAGT CGAACGGGCG ACGATATGCG AGGTAGTGCC 
0241 TGGTACTACT CCGGCTACGA TGATCGCAGC AGGGATCGGG ACTACGATCG CTACTACGAT 
0301 CGCTCCCGTT ATTACGAAGA TCGCTATACT CCGAGAACAT ACGACCGCTA TGAGGGTCGT 
0361 GGCTATGATG ATTATAGAAG GGGATCTGCG TATGGAGGAT CATACGATCG G-GAACGCGG 
0421 ATATGGATAC GACAACCGGG -ATCGGTACT ACAGTGGTGA TCGCTACAGC GAGGGGTTAT 
0481 CCAGAGATCG CTACTACGAT CG 
 Assemble Data

12911R-2.IR_full       1   TTGATATCCTGCCTGACGCTGCTCGTCTGTGTCCAGGCAGCGGTGACAGGGCCGGAAGCT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12911R-2.in silico     1   TTGATATCCTGCCTGACGCTGCTCGTCTGTGTCCAGGCAGCGGTGACAGGGCCGGAAGCT 60


12911R-2.IR_full       61  CGATCCAGTGTGGACGCCAAGGATCAGCAGCTGGCTACAGCGAGCGTTGGAATCCTCGAC 120
                           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
12911R-2.in silico     61  CGATCCAGTGTGGACGCCAAGGATCAGCAGCTGGCTACAGCGAGTGTTGGAATCCTCGAC 120


12911R-2.IR_full       121 TCCGTGCTCCGAGGAAAGAGCCGCCAGTCGCGGTGCGTGAGATGCTACGAGGATCGGGAT 180
                           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
12911R-2.in silico     121 TCCGTGCTTCGAGGAAAGAGCCGCCAGTCGCGGTGCGTGAGATGCTACGAGGATCGGGAT 180


12911R-2.IR_full       181 CGTGATAGGTACTACAGCGGATACTCCAGTCGAACGGGCGACGATATGCGAGGTAGTGCC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12911R-2.in silico     181 CGTGATAGGTACTACAGCGGATACTCCAGTCGAACGGGCGACGATATGCGAGGTAGTGCC 240


12911R-2.IR_full       241 TGGTACTACTCCGGCTACGATGATCGCAGCAGGGATCGGGACTACGATCGCTACTACGAT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12911R-2.in silico     241 TGGTACTACTCCGGCTACGATGATCGCAGCAGGGATCGGGACTACGATCGCTACTACGAT 300


12911R-2.IR_full       301 CGCTCCCGTTATTACGAAGATCGCTATACTCCGAGAACATACGACCGCTATGAGGGTCGT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12911R-2.in silico     301 CGCTCCCGTTATTACGAAGATCGCTATACTCCGAGAACATACGACCGCTATGAGGGTCGT 360


12911R-2.IR_full       361 GGCTATGATGATTATAGAAGGGGATCTGCGTATGGAGGATCATACGATCGGNGAACGCGG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
12911R-2.in silico     361 GGCTATGATGATTATAGAAGGGGATCTGCGTATGGAGGATCATACGATCGG-GAACGCGG 420


12911R-2.IR_full       421 ATATGGATACGACAACCGGGNATCGGTACTACAGTGGTGATCGCTACAGCGAGGGGTCAT 480
                           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||
12911R-2.in silico     421 ATATGGATACGACAACCGGG-ATCGGTACTACAGTGGTGATCGCTACAGCGAGGGGTTAT 480


12911R-2.IR_full       481 CCAGAGATCGCTACTACGATCG 502
                           ||||||||||||||||||||||
12911R-2.in silico     481 CCAGAGATCGCTACTACGATCG 502

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100.41  484  27  NM_136724.1  CG12911-RA (CG12911), mRNA 
0.2   10  NM_001014733.1  CG1522-RI, transcript variant I (cac), mRNA 
0.2   10  NM_206694.1  CG1522-RE, transcript variant E (cac), mRNA 
0.2   10  NM_206695.1  CG1522-RD, transcript variant D (cac), mRNA 
0.2   10  NM_001014735.1  CG1522-RG, transcript variant G (cac), mRNA 
0.2   10  NM_001014734.1  CG1522-RH, transcript variant H (cac), mRNA 
0.2   10  NM_001014732.1  CG1522-RJ, transcript variant J (cac), mRNA 
0.2   10  NM_206693.1  CG1522-RF, transcript variant F (cac), mRNA 
0.2   10  NM_206697.1  CG1522-RB, transcript variant B (cac), mRNA 
0.2   10  NM_078578.2  CG1522-RA, transcript variant A (cac), mRNA 
0.2   10  NM_206696.1  CG1522-RC, transcript variant C (cac), mRNA 
0   NM_141370.1  CG15591-RA (Osi8), mRNA 
0   NM_001038858.1  CG8585-RB, transcript variant B (Ih), mRNA 
0   NM_001038859.1  CG8585-RE, transcript variant E (Ih), mRNA 
0   NM_001038856.1  CG8585-RC, transcript variant C (Ih), mRNA 
0   NM_079794.2  CG5490-RB, transcript variant B (Tl), mRNA 
0   NM_170287.1  CG5490-RA, transcript variant A (Tl), mRNA 
0   NM_165535.1  CG2146-RC, transcript variant C (didum), mRNA 
0   NM_057838.3  CG2146-RA, transcript variant A (didum), mRNA 
0   NM_165536.1  CG2146-RB, transcript variant B (didum), mRNA 
0   NM_143601.2  CG12114-RA (CG12114), mRNA 
0   NM_136483.2  CG12822-RA, transcript variant A (CG12822), mRNA 
0   NM_206052.1  CG12822-RB, transcript variant B (CG12822), mRNA 
0   NM_080104.2  CG4032-RA (Abl), mRNA 
0   NM_167842.1  CG13900-RA, transcript variant A (CG13900), mRNA 
0   NM_138215.2  CG13900-RB, transcript variant B (CG13900), mRNA 
0   NM_137230.2  CG8386-RA (CG8386), mRNA 
0   NM_135179.2  CG9508-RA (CG9508), mRNA 
0   NM_136731.1  CG12908-RA, transcript variant A (Ndg), mRNA 
0   NM_206074.1  CG12908-RB, transcript variant B (Ndg), mRNA 

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