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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 12756R-2 
 Symbol Eaf6  Full Name Eaf6 
 CG No CG12756  Old CG No CG12756 
 Synonyms dEaf6, CG12756, Eaf6 
 Accession No (Link to NCBI) NM_139724.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGTCAGCGAAACGAACGGGAAC 
 Primer Seq. 3'
aatctagaggtaccACGCTGCCCTCATTGCGATGC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GTCAGCGAAA CGAACGGGAA CAAGCCAAAG AAGTCGGCCA AAACGAGCTC GAATACGAAA 
0061 GGCGGCTCCA TGGACACTCG CGCCGAGTTG GCGGACCTCA TCAAGAAGAA GGCCGAAACA 
0121 TCGGAACAAC TGGCCAATCT GGAGCGACAG ATCTACGCCT TCGAGGGCTC CTACCTAGAG 
0181 GACACGCAGT TGTGCGGAAA CATCATCCGC GGCTGGGAGC GCTATCTGAC CTCCAACAAG 
0241 GCCACCAACT CCAAGGCCGA CAAGCGGAAT CGCAAGTTCA AGGAGGCCGA GCGCCTGTTC 
0301 TCCAAGTCCA GCATCACCTC CATGGCTATA TGCAATCCTG AGCGCGCCAG CGAATCGGAT 
0361 TCCATCACAA ATGAAGACTC CAGCGACAAT CAGATTCTCA ATCAATCAGA ACACCACAAC 
0421 GGCCCACGAC GGAACCACGA CAATCAAGAG CACACCGAAA GACGAAAAGG ATTCACCCTC 
0481 GCATCGCAAT GAGGGCAGCG T 
 in silico PCR Fragment
0001 GTCAGCGAAA CGAACGGGAA CAAGCCAAAG AAGTCGGCCA AAACGAGCTC GAATACGAAA 
0061 GGCGGCTCCA TGGACACTCG CGCCGAGTTG GCGGACCTCA TCAAGAAGAA GGCCGAAACA 
0121 TCGGAACAAC TGGCCAATCT GGAGCGACAG ATCTACGCCT TCGAGGGCTC CTACCTAGAG 
0181 GACACGCAGT TGTGCGGAAA CATCATCCGA GGCTGGGAGC GCTATCTGAC CTCCAACAAG 
0241 GCCACCAACT CCAAGGCCGA CAAGCGGAAT CGCAAGTTCA AGGAGGCCGA GCGCCTGTTC 
0301 TCCAAGTCCA GCATCACCTC CATGGCTATA TGCAATCCTG AGCGCGCCAG CGAATCGGAT 
0361 TCCATCACAA ATGAAGACTC CAGCGACAAT CAGA-TCTCA ATCAATCAGA ACACCACAAC 
0421 GGCCCACGAC GGAACCACGA CAATCAAGAG CACACCGAAA GACGAAAAGG ATTCACCCTC 
0481 GCATCGCAAT GAGGGCAGCG T 
 Assemble Data

12756R-2.IR_full       1   GTCAGCGAAACGAACGGGAACAAGCCAAAGAAGTCGGCCAAAACGAGCTCGAATACGAAA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12756R-2.in silico     1   GTCAGCGAAACGAACGGGAACAAGCCAAAGAAGTCGGCCAAAACGAGCTCGAATACGAAA 60


12756R-2.IR_full       61  GGCGGCTCCATGGACACTCGCGCCGAGTTGGCGGACCTCATCAAGAAGAAGGCCGAAACA 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12756R-2.in silico     61  GGCGGCTCCATGGACACTCGCGCCGAGTTGGCGGACCTCATCAAGAAGAAGGCCGAAACA 120


12756R-2.IR_full       121 TCGGAACAACTGGCCAATCTGGAGCGACAGATCTACGCCTTCGAGGGCTCCTACCTAGAG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12756R-2.in silico     121 TCGGAACAACTGGCCAATCTGGAGCGACAGATCTACGCCTTCGAGGGCTCCTACCTAGAG 180


12756R-2.IR_full       181 GACACGCAGTTGTGCGGAAACATCATCCGCGGCTGGGAGCGCTATCTGACCTCCAACAAG 240
                           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
12756R-2.in silico     181 GACACGCAGTTGTGCGGAAACATCATCCGAGGCTGGGAGCGCTATCTGACCTCCAACAAG 240


12756R-2.IR_full       241 GCCACCAACTCCAAGGCCGACAAGCGGAATCGCAAGTTCAAGGAGGCCGAGCGCCTGTTC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12756R-2.in silico     241 GCCACCAACTCCAAGGCCGACAAGCGGAATCGCAAGTTCAAGGAGGCCGAGCGCCTGTTC 300


12756R-2.IR_full       301 TCCAAGTCCAGCATCACCTCCATGGCTATATGCAATCCTGAGCGCGCCAGCGAATCGGAT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12756R-2.in silico     301 TCCAAGTCCAGCATCACCTCCATGGCTATATGCAATCCTGAGCGCGCCAGCGAATCGGAT 360


12756R-2.IR_full       361 TCCATCACAAATGAAGACTCCAGCGACAATCAGATTCTCAATCAATCAGAACACCACAAC 420
                           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
12756R-2.in silico     361 TCCATCACAAATGAAGACTCCAGCGACAATCAGA-TCTCAATCAATCAGAACACCACAAC 420


12756R-2.IR_full       421 GGCCCACGACGGAACCACGACAATCAAGAGCACACCGAAAGACGAAAAGGATTCACCCTC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12756R-2.in silico     421 GGCCCACGACGGAACCACGACAATCAAGAGCACACCGAAAGACGAAAAGGATTCACCCTC 480


12756R-2.IR_full       481 GCATCGCAATGAGGGCAGCGT 501
                           |||||||||||||||||||||
12756R-2.in silico     481 GCATCGCAATGAGGGCAGCGT 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_139724.2  CG12756-RA (Eaf6), mRNA 
0   NM_001032082.1  CG4970-RB (CG4970), mRNA 
0   NM_135662.3  CG4970-RA, transcript variant A (CG4970), mRNA 
0   NM_135663.2  CG14929-RA, transcript variant A (CG14929), mRNA 
0   NM_079637.4  CG4843-RA, transcript variant A (Tm2), mRNA 
0   NM_169645.2  CG4843-RC, transcript variant C (Tm2), mRNA 
0   NM_169644.1  CG4843-RB, transcript variant B (Tm2), mRNA 
0   NM_078800.2  CG4422-RA (Gdi), mRNA 
0   NM_079733.3  CG4677-RA, transcript variant A (lmd), mRNA 
0   NM_170044.2  CG4677-RB, transcript variant B (lmd), mRNA 
0   12  NM_165913.1  CG8581-RB, transcript variant B (fra), mRNA 
0   12  NM_078992.2  CG8581-RA, transcript variant A (fra), mRNA 
0   NM_057699.3  CG7563-RB, transcript variant B (CalpA), mRNA 
0   NM_137151.2  CG10212-RA (SMC2), mRNA 
0   NM_057700.3  CG7563-RA, transcript variant A (CalpA), mRNA 
0   NM_165579.1  CG2910-RA, transcript variant A (nito), mRNA 
0   NM_136495.2  CG2910-RB, transcript variant B (nito), mRNA 
0   NM_132567.1  CG15732-RA (CG15732), mRNA 
0   NM_164454.1  CG31671-RA (tho2), mRNA 
0   NM_079435.2  CG9262-RA (Shal), mRNA 
0   NM_001015273.1  CG40139-PA.3 (CG40139), mRNA 
0   NM_001015297.1  CG40124-PA.3 (CG40124), mRNA 
0   NM_168361.1  CG16711-RB, transcript variant B (CG16711), mRNA 
0   NM_140090.1  CG16711-RA, transcript variant A (CG16711), mRNA 
0   NM_001014759.1  CG33517-RB, transcript variant B (D2R), mRNA 
0   NM_001014758.2  CG33517-RC, transcript variant C (D2R), mRNA 
0   NM_001031909.1  CG33517-RE, transcript variant E (D2R), mRNA 
0   NM_001014757.2  CG33517-RD, transcript variant D (D2R), mRNA 
0   NM_001014760.2  CG33517-RA, transcript variant A (D2R), mRNA 
0   NM_176133.3  CG12052-RI, transcript variant I (lola), mRNA 

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