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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
12749R-1 |
| Symbol |
Hrb87F |
Full Name |
Heterogeneous nuclear ribonucleoprotein at 87F |
| CG No |
CG12749 |
Old CG No |
CG12749 |
| Synonyms |
hrp36, Hrb87f, CG12749, HRP36, P11, Q16, Q14, Hrp36, p38, P11/Hrb87F, hrp40, Hrb87Fa, HRB87F/hrp36, Hrb85CD, Hrb2, Hrb87F, hnRNP36 |
| Accession No (Link to NCBI) |
NM_057459.3 |
| Inserted Chr. |
ll |
| Insertional Mutation |
|
| Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
| Map Viewer |
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Reference
[Please submit your publication]
|
Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121
[
PubMed ID = 31034473
]
[
RRC reference
]
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| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgATGGCGGAACAAAACGATTCC |
| Primer Seq. 3' |
aatctagaggtaccGTCATCGAACTCAATGAAGGC |
| Predicted Fragment Size |
495 |
| IR fragment full Seq |
0001 ATGGCGGAAC AAAACGATTC CAACGGAAAC TACGACGATG GTGAAGAGAT CACCGAGCCA
0061 GANGCAGCTG CGCAAACTGT TCATCGGCGG ACTGGACTAC CGCACCACCG ATGATGGCCT
0121 GAAGGCTCAC TTCGAGAAGT GGGGCAACAT TGTCGACGTG GTGGTGATGA AGGATCCCAA
0181 GACGANAGCG CTCTCGCGGC TTCGGTTTCA TCACGTACTC CCAGTCGTAC ATGATCGACA
0241 ATGCGCAGAA TGCCAGGCCA CACAAGATCG ATGGACGCAC CGTGGAGCCC AAGAgGGCTG
0301 TGCCACGCCA GGAGATCGAT TCCCCGAATG CGGGAGCCAC GGTAAAGAAG CTCTTTGTGG
0361 GCGGGCTTCG AGACGATCAC GATGAAGAGT GCCTGCGCGA GTACTTCAAG GACTTTGGCC
0421 AGATCGTGAG CGTGAACATT GTTTCCGACA AGGACACCGG CAAGAAGCGC GGCTTCGCCT
0481 TCATTGAGTT CGATGAC |
| in silico PCR Fragment |
0001 ATGGCGGAAC AAAACGATTC CAACGGAAAC TACGACGATG GTGAAGAGAT CACCGAGCCA
0061 GA-GCAGCTG CGCAAACTGT TCATCGGCGG ACTGGACTAC CGCACCACAG ATGATGGCCT
0121 GAAGGCTCAC TTCGAGAAGT GGGGCAACAT TGTCGACGTG GTGGTGATGA AGGATCCCAA
0181 GACGA-AGCG CTCTCGCGGC TTCGGTTTCA TCACGTACTC CCAGTCGTAC ATGATCGACA
0241 ATGCGCAGAA TGCCAGGCCA CACAAGATCG ATGGACGCAC CGTGGAGCCC AAGAGGGCTG
0301 TGCCACGCCA GGAGATCGAT TCCCCGAATG CGGGAGCCAC GGTAAAGAAG CTCTTTGTGG
0361 GCGGGCTTCG AGACGATCAC GATGAAGAGT GCCTGCGCGA GTACTTCAAG GACTTTGGCC
0421 AGATCGTGAG CGTGAACATT GTTTCCGACA AGGACACCGG CAAGAAGCGC GGCTTCGCCT
0481 TCATTGAGTT CGATGAC |
| Assemble Data |
12749R-1.IR_full 1 ATGGCGGAACAAAACGATTCCAACGGAAACTACGACGATGGTGAAGAGATCACCGAGCCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12749R-1.in silico 1 ATGGCGGAACAAAACGATTCCAACGGAAACTACGACGATGGTGAAGAGATCACCGAGCCA 60
12749R-1.IR_full 61 GANGCAGCTGCGCAAACTGTTCATCGGCGGACTGGACTACCGCACCACCGATGATGGCCT 120
|| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
12749R-1.in silico 61 GA-GCAGCTGCGCAAACTGTTCATCGGCGGACTGGACTACCGCACCACAGATGATGGCCT 120
12749R-1.IR_full 121 GAAGGCTCACTTCGAGAAGTGGGGCAACATTGTCGACGTGGTGGTGATGAAGGATCCCAA 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12749R-1.in silico 121 GAAGGCTCACTTCGAGAAGTGGGGCAACATTGTCGACGTGGTGGTGATGAAGGATCCCAA 180
12749R-1.IR_full 181 GACGANAGCGCTCTCGCGGCTTCGGTTTCATCACGTACTCCCAGTCGTACATGATCGACA 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
12749R-1.in silico 181 GACGA-AGCGCTCTCGCGGCTTCGGTTTCATCACGTACTCCCAGTCGTACATGATCGACA 240
12749R-1.IR_full 241 ATGCGCAGAATGCCAGGCCACACAAGATCGATGGACGCACCGTGGAGCCCAAGAGGGCTG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12749R-1.in silico 241 ATGCGCAGAATGCCAGGCCACACAAGATCGATGGACGCACCGTGGAGCCCAAGAGGGCTG 300
12749R-1.IR_full 301 TGCCACGCCAGGAGATCGATTCCCCGAATGCGGGAGCCACGGTAAAGAAGCTCTTTGTGG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12749R-1.in silico 301 TGCCACGCCAGGAGATCGATTCCCCGAATGCGGGAGCCACGGTAAAGAAGCTCTTTGTGG 360
12749R-1.IR_full 361 GCGGGCTTCGAGACGATCACGATGAAGAGTGCCTGCGCGAGTACTTCAAGGACTTTGGCC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12749R-1.in silico 361 GCGGGCTTCGAGACGATCACGATGAAGAGTGCCTGCGCGAGTACTTCAAGGACTTTGGCC 420
12749R-1.IR_full 421 AGATCGTGAGCGTGAACATTGTTTCCGACAAGGACACCGGCAAGAAGCGCGGCTTCGCCT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12749R-1.in silico 421 AGATCGTGAGCGTGAACATTGTTTCCGACAAGGACACCGGCAAGAAGCGCGGCTTCGCCT 480
12749R-1.IR_full 481 TCATTGAGTTCGATGAC 497
|||||||||||||||||
12749R-1.in silico 481 TCATTGAGTTCGATGAC 497
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
477 |
0 |
0 |
0 |
NM_057459.3 |
CG12749-RA, transcript variant A (Hrb87F), mRNA |
| 100 |
477 |
0 |
0 |
0 |
NM_057458.3 |
CG12749-RB, transcript variant B (Hrb87F), mRNA |
| 0 |
0 |
25 |
63 |
100 |
NM_170370.1 |
CG9983-RA, transcript variant A (Hrb98DE), mRNA |
| 0 |
0 |
25 |
63 |
100 |
NM_170371.1 |
CG9983-RE, transcript variant E (Hrb98DE), mRNA |
| 0 |
0 |
25 |
63 |
100 |
NM_170373.1 |
CG9983-RD, transcript variant D (Hrb98DE), mRNA |
| 0 |
0 |
25 |
63 |
100 |
NM_079819.2 |
CG9983-RB, transcript variant B (Hrb98DE), mRNA |
| 0 |
0 |
25 |
63 |
100 |
NM_170374.1 |
CG9983-RF, transcript variant F (Hrb98DE), mRNA |
| 0 |
0 |
25 |
63 |
100 |
NM_170372.1 |
CG9983-RC, transcript variant C (Hrb98DE), mRNA |
| 0 |
0 |
5 |
17 |
44 |
NM_001014677.1 |
CG6354-RC, transcript variant C (Rb97D), mRNA |
| 0 |
0 |
5 |
17 |
44 |
NM_001014672.1 |
CG6354-RH, transcript variant H (Rb97D), mRNA |
| 0 |
0 |
5 |
17 |
44 |
NM_170293.2 |
CG6354-RA, transcript variant A (Rb97D), mRNA |
| 0 |
0 |
5 |
17 |
44 |
NM_001014673.1 |
CG6354-RG, transcript variant G (Rb97D), mRNA |
| 0 |
0 |
5 |
17 |
44 |
NM_001014675.1 |
CG6354-RE, transcript variant E (Rb97D), mRNA |
| 0 |
0 |
5 |
17 |
44 |
NM_001014671.1 |
CG6354-RI, transcript variant I (Rb97D), mRNA |
| 0 |
0 |
5 |
17 |
44 |
NM_001014676.1 |
CG6354-RD, transcript variant D (Rb97D), mRNA |
| 0 |
0 |
5 |
17 |
44 |
NM_001014674.1 |
CG6354-RF, transcript variant F (Rb97D), mRNA |
| 0 |
0 |
5 |
17 |
44 |
NM_079796.3 |
CG6354-RB, transcript variant B (Rb97D), mRNA |
| 0 |
0 |
3 |
5 |
13 |
NM_170229.2 |
CG5099-RB, transcript variant B (msi), mRNA |
| 0 |
0 |
3 |
5 |
13 |
NM_079838.2 |
CG5099-RA, transcript variant A (msi), mRNA |
| 0 |
0 |
2 |
6 |
3 |
NM_143061.1 |
CG13648-RA (tnc), mRNA |
| 0 |
0 |
2 |
3 |
9 |
NM_135251.2 |
CG11266-RB, transcript variant B (CG11266), mRNA |
| 0 |
0 |
2 |
3 |
9 |
NM_164733.1 |
CG11266-RD, transcript variant D (CG11266), mRNA |
| 0 |
0 |
2 |
3 |
9 |
NM_164735.1 |
CG11266-RG, transcript variant G (CG11266), mRNA |
| 0 |
0 |
2 |
3 |
9 |
NM_164730.1 |
CG11266-RA, transcript variant A (CG11266), mRNA |
| 0 |
0 |
2 |
3 |
9 |
NM_164732.1 |
CG11266-RC, transcript variant C (CG11266), mRNA |
| 0 |
0 |
2 |
3 |
9 |
NM_164734.1 |
CG11266-RF, transcript variant F (CG11266), mRNA |
| 0 |
0 |
2 |
3 |
9 |
NM_164731.1 |
CG11266-RE, transcript variant E (CG11266), mRNA |
| 0 |
0 |
2 |
3 |
6 |
NM_080096.2 |
CG7869-RA (SuUR), mRNA |
| 0 |
0 |
2 |
2 |
8 |
NM_141639.1 |
CG16779-RA (CG16779), mRNA |
| 0 |
0 |
2 |
2 |
6 |
NM_164861.1 |
CG4389-RC, transcript variant C (CG4389), mRNA |
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