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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 12729R-2 
 Symbol CG12729  Full Name CG12729 
 CG No CG12729  Old CG No CG12729 
 Synonyms CG12729 
 Accession No (Link to NCBI) NM_132043.1 
 Inserted Chr. lll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGTCTGCACTTCACTGTCGACT 
 Primer Seq. 3'
aatctagaggtaccCGCGGAATGCACTTGTCCATC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GTCTGCACTT CACTGTCGAC TCTCAGCGAG ATGTCGCTCC AATCTCTGGG AATTGGAGTA 
0061 GCTGGAAAAG GCCAAGCCAA GTTGAAAAGC GAAACGGAAA TCGATGCCCA CGACTGGCAG 
0121 TTGCTTCTCC ACTCGATACA GTCGAGTATT CGCAAAAAAT CCGATCTGTT GATAGCTGTC 
0181 ACCCATTTTC TGATCACCAA GGAGTACCGC CTGCGTTGCG CCATCAATTG TTCAGCATCC 
0241 GACGGAAGGC AGTTGGCTGG AGGATGTGGA ACTGTGTGTG AGCTACTGCC CGATCACTGG 
0301 AATCGAGATG CCGATCGATA CACTCTGAAC TACACGGATG GTCTGGCCGG TCAGTATATG 
0361 CTTATGGCCA AACTGAGTCG CAGGGATCTT GTGATCAGTC TGCAGAACTC GACCAGCAAA 
0421 CGAATGGCCA TCGTCTGTCT GCAGCCGGAG CATCTCGTGA AATCCACCTG TAAGTCATCG 
0481 ATGGACAAGT GCATTCNGCG  
 in silico PCR Fragment
0001 GTCTGCACTT CACTGTCGAC TCTCAGCGAG ATGTCGCTCC AATCTCTGGG AATTGGAGTA 
0061 GCTGGAAAGG GCCAAGCCAT GTTGAAAAGC GAAACGGAAA TCGATGCCCA CGACTGGCAG 
0121 TTGCTTCTCC ACTCGATCCA GTCGCATATT CGCAAAAAAT CCGATCTCTT GATAGCTGTC 
0181 ACCCACTTTC TGATCACCAA GGAGTACCGC CTGCGTTGCG CCATCAATTA TTCAGCATCC 
0241 GACGGAAGGC AGTTGGCTGG AGGATGTGGA ACTGTGTGTG AGCAGCTGCC CGATCACTGG 
0301 AATCGAGATG CCGATCGATA CACTCTGAAC TACACGGATG GTCTGGCCGG TCAGTATATC 
0361 CTTATGGCCA AACTGAGTCG CAGGGATCTT GTGATCAGTC TGCAGAACTC GACCAGCAAA 
0421 CGAATGGCCA TCGTCTGTCT GCAGCCGGAG CATCTCGTGA ATTCCACCTG TAAGTCATCG 
0481 ATGGACAAGT GCATTCCGCG  
 Assemble Data

12729R-2.IR_full       1   GTCTGCACTTCACTGTCGACTCTCAGCGAGATGTCGCTCCAATCTCTGGGAATTGGAGTA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12729R-2.in silico     1   GTCTGCACTTCACTGTCGACTCTCAGCGAGATGTCGCTCCAATCTCTGGGAATTGGAGTA 60


12729R-2.IR_full       61  GCTGGAAAAGGCCAAGCCAAGTTGAAAAGCGAAACGGAAATCGATGCCCACGACTGGCAG 120
                           |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
12729R-2.in silico     61  GCTGGAAAGGGCCAAGCCATGTTGAAAAGCGAAACGGAAATCGATGCCCACGACTGGCAG 120


12729R-2.IR_full       121 TTGCTTCTCCACTCGATACAGTCGAGTATTCGCAAAAAATCCGATCTGTTGATAGCTGTC 180
                           ||||||||||||||||| ||||||  ||||||||||||||||||||| ||||||||||||
12729R-2.in silico     121 TTGCTTCTCCACTCGATCCAGTCGCATATTCGCAAAAAATCCGATCTCTTGATAGCTGTC 180


12729R-2.IR_full       181 ACCCATTTTCTGATCACCAAGGAGTACCGCCTGCGTTGCGCCATCAATTGTTCAGCATCC 240
                           ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||
12729R-2.in silico     181 ACCCACTTTCTGATCACCAAGGAGTACCGCCTGCGTTGCGCCATCAATTATTCAGCATCC 240


12729R-2.IR_full       241 GACGGAAGGCAGTTGGCTGGAGGATGTGGAACTGTGTGTGAGCTACTGCCCGATCACTGG 300
                           |||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||
12729R-2.in silico     241 GACGGAAGGCAGTTGGCTGGAGGATGTGGAACTGTGTGTGAGCAGCTGCCCGATCACTGG 300


12729R-2.IR_full       301 AATCGAGATGCCGATCGATACACTCTGAACTACACGGATGGTCTGGCCGGTCAGTATATG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
12729R-2.in silico     301 AATCGAGATGCCGATCGATACACTCTGAACTACACGGATGGTCTGGCCGGTCAGTATATC 360


12729R-2.IR_full       361 CTTATGGCCAAACTGAGTCGCAGGGATCTTGTGATCAGTCTGCAGAACTCGACCAGCAAA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12729R-2.in silico     361 CTTATGGCCAAACTGAGTCGCAGGGATCTTGTGATCAGTCTGCAGAACTCGACCAGCAAA 420


12729R-2.IR_full       421 CGAATGGCCATCGTCTGTCTGCAGCCGGAGCATCTCGTGAAATCCACCTGTAAGTCATCG 480
                           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
12729R-2.in silico     421 CGAATGGCCATCGTCTGTCTGCAGCCGGAGCATCTCGTGAATTCCACCTGTAAGTCATCG 480


12729R-2.IR_full       481 ATGGACAAGTGCATTCNGCG 500
                           |||||||||||||||| |||
12729R-2.in silico     481 ATGGACAAGTGCATTCCGCG 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_132043.1  CG12729-RA (CG12729), mRNA 
0.2   23  NM_001032051.1  CG33715-RD, transcript variant D (Msp-300), mRNA 
0.2   13  NM_001032053.1  CG33715-RB, transcript variant B (Msp-300), mRNA 
0   NM_144487.1  CG5518-RA (sda), mRNA 
0   NM_142312.1  CG14905-RA (CG14905), mRNA 
0   NM_001043114.1  CG33484-RD, transcript variant D (zormin), mRNA 
0   NM_001043112.1  CG33484-RB, transcript variant B (zormin), mRNA 
0   NM_206240.1  CG33484-RA, transcript variant A (zormin), mRNA 
0   NM_001043113.1  CG33484-RC, transcript variant C (zormin), mRNA 
0   NM_078638.2  CG9908-RA, transcript variant A (disco), mRNA 
0   NM_001038758.1  CG9908-RB, transcript variant B (disco), mRNA 
0   NM_142734.1  CG6656-RA (CG6656), mRNA 
0   NM_132245.1  CG1387-RA (CG1387), mRNA 
0   NM_132061.1  CG5937-RA (CG5937), mRNA 
0   NM_165325.1  CG10076-RC, transcript variant C (spir), mRNA 
0   10  NM_176446.1  CG33208-RD, transcript variant D (MICAL), mRNA 
0   10  NM_176448.1  CG33208-RG, transcript variant G (MICAL), mRNA 
0   10  NM_176449.1  CG33208-RH, transcript variant H (MICAL), mRNA 
0   10  NM_176445.1  CG33208-RC, transcript variant C (MICAL), mRNA 
0   10  NM_176447.1  CG33208-RF, transcript variant F (MICAL), mRNA 
0   NM_142691.1  CG5798-RA (CG5798), mRNA 
0   NM_164568.1  CG31773-RA (CG31773), mRNA 
0   NM_057286.3  CG5303-RA (mei-S332), mRNA 
0   NM_080332.2  CG11427-RA (rb), mRNA 
0   NM_079055.2  CG4943-RA (lack), mRNA 
0   NM_137385.1  CG18432-RA (CG18432), mRNA 
0   NM_058149.3  CG3352-RA (ft), mRNA 
0   NM_140424.1  CG9007-RA (CG9007), mRNA 
0   NM_134717.2  CG4415-RA (CG4415), mRNA 
0   NM_164562.1  CG3964-RB, transcript variant B (CG3964), mRNA 

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