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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 12672R-1 
 Symbol CG12672  Full Name CG12672 
 CG No CG12672  Old CG No CG12672 
 Synonyms CG12672 
 Accession No (Link to NCBI) NM_133033.1 
 Inserted Chr. ll 
 Insertional Mutation  lethal 
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCTGCCACATCAGTTGCAACA 
 Primer Seq. 3'
aatctagaggtaccCTCAGTGGCAGTGGCAGCATA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CCTGCCACAT CAGTTGCAAC ACCAGCTGCA GCAGCAACAA CCACTGCCCC TCCGGAGGCT 
0061 AGTGCACCTG GATCCGGATC AGGATCGGGA TCGGGATCAC AGGCATCGCG ACCTGCAACG 
0121 GCGCCTGCAC GCTCCAGCAG CAGCAGCAAC AACAACAATA TTGCCACCAG CAGCACCAGC 
0181 TTTTACAGGG TCAACCTGAG CAACACGAAC AGCAGCAGCA TCAACAACAA CACCACCAGC 
0241 TGCAGCAGCA GCAGCAACAA CGCTAACCAA GCCAGCAACA ACAATCACCA TGAGAGCAGC 
0301 AACAGCACAT TGGTGGTCAA CACGAGCAGC ACTGCATCAG CTGGTAGCAC GGCAGCAGGA 
0361 GGAAGCACTA CAGCTGGAGC AACTGCATCA TCGGCCGCCA CCAACAACAA CCACATCTAT 
0421 GTGAATCCGC ACAGCTACGA CAGCAGCACC ACCGGCAGCG TGAGTGGTTC CACGGCAGTT 
0481 ATGCTgNCAC TGCCACTGAG  
 in silico PCR Fragment
0001 CCTGCCACAT CAGTTGCAAC ACCAGCTGCA GCAGCAACAA CCACTGCCCC TCCGGAGGCT 
0061 AGTGCACCTG GATCCGGATC AGGATCGGGA TCGGGATCAC AGGCATCGCG ACCTGCAACG 
0121 GCGCCTGCAC GCTCCAGCAG CAGCAGCAAC AACAACAATA TTGCCACCAG CAGCACCAGC 
0181 TTTTACAGGG TCAACCTGAG CAACACGAAC AGCAGCAGCA TCAACAACAA CACCACCAGC 
0241 TGCAGCAGCA GCAGCAACAA CGCTAACCAA GCCAGCAACA ACAATCACCA TGAGAGCAGC 
0301 AACAGCACAT TGGTGGTCAA CACGAGCAGC ACTGCATCAG CTGGTAGCAC GGCAGCAGGA 
0361 GGAAGCACTA CAGCTGGAGC AACTGCATCA TCAACCGCCA CCAACAACAA CCACATTTAT 
0421 GTGAATCCGC ACAGCTACGA CAGCAGCACC ACCGGCAGCG TGAGTGGTTC CACGGCAGTT 
0481 ATGCTGCCAC TGCCACTGAG  
 Assemble Data

12672R-1.IR_full       1   CCTGCCACATCAGTTGCAACACCAGCTGCAGCAGCAACAACCACTGCCCCTCCGGAGGCT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12672R-1.in silico     1   CCTGCCACATCAGTTGCAACACCAGCTGCAGCAGCAACAACCACTGCCCCTCCGGAGGCT 60


12672R-1.IR_full       61  AGTGCACCTGGATCCGGATCAGGATCGGGATCGGGATCACAGGCATCGCGACCTGCAACG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12672R-1.in silico     61  AGTGCACCTGGATCCGGATCAGGATCGGGATCGGGATCACAGGCATCGCGACCTGCAACG 120


12672R-1.IR_full       121 GCGCCTGCACGCTCCAGCAGCAGCAGCAACAACAACAATATTGCCACCAGCAGCACCAGC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12672R-1.in silico     121 GCGCCTGCACGCTCCAGCAGCAGCAGCAACAACAACAATATTGCCACCAGCAGCACCAGC 180


12672R-1.IR_full       181 TTTTACAGGGTCAACCTGAGCAACACGAACAGCAGCAGCATCAACAACAACACCACCAGC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12672R-1.in silico     181 TTTTACAGGGTCAACCTGAGCAACACGAACAGCAGCAGCATCAACAACAACACCACCAGC 240


12672R-1.IR_full       241 TGCAGCAGCAGCAGCAACAACGCTAACCAAGCCAGCAACAACAATCACCATGAGAGCAGC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12672R-1.in silico     241 TGCAGCAGCAGCAGCAACAACGCTAACCAAGCCAGCAACAACAATCACCATGAGAGCAGC 300


12672R-1.IR_full       301 AACAGCACATTGGTGGTCAACACGAGCAGCACTGCATCAGCTGGTAGCACGGCAGCAGGA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12672R-1.in silico     301 AACAGCACATTGGTGGTCAACACGAGCAGCACTGCATCAGCTGGTAGCACGGCAGCAGGA 360


12672R-1.IR_full       361 GGAAGCACTACAGCTGGAGCAACTGCATCATCGGCCGCCACCAACAACAACCACATCTAT 420
                           ||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||
12672R-1.in silico     361 GGAAGCACTACAGCTGGAGCAACTGCATCATCAACCGCCACCAACAACAACCACATTTAT 420


12672R-1.IR_full       421 GTGAATCCGCACAGCTACGACAGCAGCACCACCGGCAGCGTGAGTGGTTCCACGGCAGTT 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12672R-1.in silico     421 GTGAATCCGCACAGCTACGACAGCAGCACCACCGGCAGCGTGAGTGGTTCCACGGCAGTT 480


12672R-1.IR_full       481 ATGCTGNCACTGCCACTGAG 500
                           |||||| |||||||||||||
12672R-1.in silico     481 ATGCTGCCACTGCCACTGAG 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
 

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