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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 12398R-1 
 Symbol CG12398  Full Name CG12398 
 CG No CG12398  Old CG No CG12398 
 Synonyms CG12398 
 Accession No (Link to NCBI) NM_132757.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCTCGGCCATGATCATTCTGCT 
 Primer Seq. 3'
aatctagaggtaccCCCTCATGTCCTCCAACTTGC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CTCGGCCATG ATCATTCTGC TCCTGAACAA GGGAATCCTA GAGCAACGGC CGGATATTGT 
0061 GGATGAGCAG CATCgCGTTC GCTCCATACA TATCGAAGAT CTTCGTGAAT CTTACGATTT 
0121 TATAGTCATT GGCGGCGGAT CGGCGGGTTG TGTTTTAGCC GCCAGACTCT CGGAGAATCC 
0181 GGAATGGAGC GTACTACTTT TGGAAGCCGG TGGGGATGAG CCCCTTCTCA TCGATTTGCC 
0241 GCAATTGTAT CCGGTATTCC AGCGAAGCCC GTGGGACTGG AAGTATCTTA CCGAACCATC 
0301 GGATCGCTAC TGCTTGGCCA TGGAGGATCA ACGCTGCTTT TGGCCAAGGG CCAAAGTTTT 
0361 GGGAGGATGC AGTTCCATCA ACGCGATGAT GTATATACGT GGAAATAGAC GGGACTACGA 
0421 TCAATGGGCG GCATTGGGAA ATCCCGGCTG GAATTATGAC AATATTCTGC ACTATTTCCG 
0481 CAAGTTGGAG GACATGAGGN G 
 in silico PCR Fragment
0001 CTCGGCCATG ATCATTCTGC TACTGAACAA GGGAATCCTA GAGCAACGGC CGGATATTGT 
0061 GGATGAGCAG CATCGCGTAC GCTCCATACA TATCGAAGAT CTTCGTGAAT CTTACGATTT 
0121 TATAGTCATT GGCGGCGGAT CGGCGGGTTG TGTTTTAGCC GCCAGACTCT CGGAGAATCC 
0181 GGAATGGAGC GTACTACTTT TGGAAGCCGG TGGGGATGAG CCTCTTCTCA TCGATTTGCC 
0241 GCAATTGTAT CCGGTATTCC AGCGAAGCCC GTGGGACTGG AAGTATCTTA CCGAACCATC 
0301 GGATCGCTAC TGCTTGGCCA TGGAGGATCA ACGCTGCTTT TGGCCAAGGG CCAAAGTTTT 
0361 GGGAGGATGC AGTTCCATCA ACGCGATGAT GTATATACGT GGAAATAGAC GGGACTACGA 
0421 TCAATGGGCG GCATTGGGAA ATCCCGGCTG GAATTATGAC AATATTCTGC ACTATTTCCG 
0481 CAAGTTGGAG GACATGAGG- G 
 Assemble Data

12398R-1.IR_full       1   CTCGGCCATGATCATTCTGCTCCTGAACAAGGGAATCCTAGAGCAACGGCCGGATATTGT 60
                           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
12398R-1.in silico     1   CTCGGCCATGATCATTCTGCTACTGAACAAGGGAATCCTAGAGCAACGGCCGGATATTGT 60


12398R-1.IR_full       61  GGATGAGCAGCATCGCGTTCGCTCCATACATATCGAAGATCTTCGTGAATCTTACGATTT 120
                           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
12398R-1.in silico     61  GGATGAGCAGCATCGCGTACGCTCCATACATATCGAAGATCTTCGTGAATCTTACGATTT 120


12398R-1.IR_full       121 TATAGTCATTGGCGGCGGATCGGCGGGTTGTGTTTTAGCCGCCAGACTCTCGGAGAATCC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12398R-1.in silico     121 TATAGTCATTGGCGGCGGATCGGCGGGTTGTGTTTTAGCCGCCAGACTCTCGGAGAATCC 180


12398R-1.IR_full       181 GGAATGGAGCGTACTACTTTTGGAAGCCGGTGGGGATGAGCCCCTTCTCATCGATTTGCC 240
                           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
12398R-1.in silico     181 GGAATGGAGCGTACTACTTTTGGAAGCCGGTGGGGATGAGCCTCTTCTCATCGATTTGCC 240


12398R-1.IR_full       241 GCAATTGTATCCGGTATTCCAGCGAAGCCCGTGGGACTGGAAGTATCTTACCGAACCATC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12398R-1.in silico     241 GCAATTGTATCCGGTATTCCAGCGAAGCCCGTGGGACTGGAAGTATCTTACCGAACCATC 300


12398R-1.IR_full       301 GGATCGCTACTGCTTGGCCATGGAGGATCAACGCTGCTTTTGGCCAAGGGCCAAAGTTTT 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12398R-1.in silico     301 GGATCGCTACTGCTTGGCCATGGAGGATCAACGCTGCTTTTGGCCAAGGGCCAAAGTTTT 360


12398R-1.IR_full       361 GGGAGGATGCAGTTCCATCAACGCGATGATGTATATACGTGGAAATAGACGGGACTACGA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12398R-1.in silico     361 GGGAGGATGCAGTTCCATCAACGCGATGATGTATATACGTGGAAATAGACGGGACTACGA 420


12398R-1.IR_full       421 TCAATGGGCGGCATTGGGAAATCCCGGCTGGAATTATGACAATATTCTGCACTATTTCCG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12398R-1.in silico     421 TCAATGGGCGGCATTGGGAAATCCCGGCTGGAATTATGACAATATTCTGCACTATTTCCG 480


12398R-1.IR_full       481 CAAGTTGGAGGACATGAGGNG 501
                           ||||||||||||||||||| |
12398R-1.in silico     481 CAAGTTGGAGGACATGAGG-G 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_132757.1  CG12398-RA (CG12398), mRNA 
0   10  26  NM_132748.1  CG12539-RA (CG12539), mRNA 
0   12  NM_132752.2  CG9517-RA, transcript variant A (CG9517), mRNA 
0   12  NM_167418.1  CG9517-RB, transcript variant B (CG9517), mRNA 
0   29  NM_139271.1  CG9522-RA (CG9522), mRNA 
0   NM_137128.2  CG12864-RA, transcript variant A (Su(var)2-HP2), mRNA 
0   NM_168971.2  CG8385-RC, transcript variant C (Arf79F), mRNA 
0   NM_168973.2  CG8385-RE, transcript variant E (Arf79F), mRNA 
0   NM_057607.4  CG8385-RB, transcript variant B (Arf79F), mRNA 
0   NM_168970.2  CG8385-RA, transcript variant A (Arf79F), mRNA 
0   NM_136158.2  CG10538-RA (CdGAPr), mRNA 
0   NM_142780.2  CG13855-RA (CG13855), mRNA 
0   NM_135808.2  CG7110-RB (CG7110), mRNA 
0   NM_143615.2  CG11518-RA (pygo), mRNA 
0   NM_001043307.1  CG34133-RA, transcript variant A (CG34133), mRNA 
0   NM_001043308.1  CG34133-RB, transcript variant B (CG34133), mRNA 
0   18  NM_058155.3  CG1152-RA (Gld), mRNA 
0   12  NM_132749.1  CG9521-RA (CG9521), mRNA 
0   NM_078766.2  CG9159-RA (Kr-h2), mRNA 
0   NM_135949.2  CG17330-RA (jhamt), mRNA 
0   NM_140101.1  CG14168-RA (CG14168), mRNA 
0   NM_136155.2  CG10628-RA (CG10628), mRNA 
0   NM_140770.2  CG13698-RB (CG13698), mRNA 
0   43  NM_132753.1  CG9514-RA (CG9514), mRNA 
0   NM_176458.2  CG4509-RB (CG4509), mRNA 
0   NM_168195.1  CG32387-RB, transcript variant B (CG32387), mRNA 
0   NM_001043123.1  CG32387-RC, transcript variant C (CG32387), mRNA 
0   NM_168196.1  CG32387-RA, transcript variant A (CG32387), mRNA 
0   NM_168514.1  CG32106-RA (CG32106), mRNA 
0   NM_080015.2  CG5462-RD, transcript variant D (scrib), mRNA 

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