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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
12359R-4 |
| Symbol |
Ulp1 |
Full Name |
Ulp1 |
| CG No |
CG12359 |
Old CG No |
CG12359 |
| Synonyms |
CG12359, DmUlp1, BcDNA:GH02751, Ulp1 |
| Accession No (Link to NCBI) |
NM_133134.2 |
| Inserted Chr. |
ll |
| Insertional Mutation |
lethal |
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Fernández-Espartero CH, Rizzo A, Fulford AD, Falo-Sanjuan J, Goutte-Gattat D, Ribeiro PS.
Prp8 regulates oncogene-induced hyperplastic growth in Drosophila.
Development (2018) 145(22)
[
PubMed ID = 30333215
]
[
RRC reference
]
Smith M, Mallin DR, Simon JA, Courey AJ.
Small ubiquitin-like modifier (SUMO) conjugation impedes transcriptional silencing by the polycomb group repressor Sex Comb on Midleg.
J Biol Chem (2011) 286(13) 11391-400
[
PubMed ID = 21278366
]
[
RRC reference
]
Saj A, Arziman Z, Stempfle D, van Belle W, Sauder U, Horn T, Dürrenberger M, Paro R, Boutros M, Merdes G.
A combined ex vivo and in vivo RNAi screen for notch regulators in Drosophila reveals an extensive notch interaction network.
Dev Cell (2010) 18(5) 862-76
[
PubMed ID = 20493818
]
[
RRC reference
]
|
| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgGAGGACACCGATTTGTCCACA |
| Primer Seq. 3' |
aatctagaggtaccCGCAGTCTTATCGGCGAATCT |
| Predicted Fragment Size |
509 |
| IR fragment full Seq |
0001 GAGGACACCG ATTTGTCCAC AAATTCCGCA TACGAATCCG CACTCCAAAT CGCGAGCAAT
0061 GTGTCGGCAG CACGAGTAGT CGGTTCGGCA GTAGGACAGC GATTTTCGCC GTCGCCAGCA
0121 GCTCACCCGA ACGTGATTGA GCGCGTCGCG TCTTCATGTG GACTCACGCC GCAGCACGTT
0181 TCCAAGTTGG GGTAATCCGT CAGTAGCGCC AAGAGGATCG GAAGAAGCAG CAGCCAACGC
0241 CACAGCAACA CAACTCCTAT GGGCGGAGAA CCAAGGTCTC CCGACATCGC ACTTATTGCC
0301 AACTGAACAG GCTTTCGAGA CATTGAACAC TAATGCGTAT TGTTCCCCGC CAGGGGATTC
0361 ACGATTTACG TTCCCTAGCC AGAACTACTC GCCGCNGCTG CCGCGGTGTG TCCCAGTTCC
0421 GAATCAGCGT TACTCTCCAG ATGGATCGCC AATACATCAA CTCCATGAGC TGCAAAATTG
0481 TCCATTGATA GATTCGCCGA TAAGANTGNG |
| in silico PCR Fragment |
0001 GAGGACACCG ATTTGTCCAC AAATTCCGCA TACGAATCCG CACTCCAAAT CGCGAGCAAT
0061 GTGTCGGCAG CACGAGTAGT CGGTTCGGCA GTAGGACAGC GATTTTCGCC GTCGCCAGCA
0121 GCTCACCCGA ACGTGATTGA GCGCGTCGCG TC-TCATGTG GACTCACGCC GCAGCACGTT
0181 TCCAAGTTGG GGTAATCCGT CAGTAGCGCC AAGAGGATCG GAAGAAGCAG CAGCCAACGC
0241 CACAGCAACA CAACTCCTAT GGGCGGAGAA CCAAGGTCTC CCGACATCGC ACTTATTGCC
0301 AACTGAACAG GCATTCGAGA CATTGAACAC TAATGCGTAT TGTTCCCCGC CAGGGGATTC
0361 ACGATTTACG TTCCCTAGCC AGAACTACTC GCCGCTGCTG CCGCGGTGTG TCCCAGTTCC
0421 GAATCAGCGT TACTCTCCAG ATGGATCGCC AATACATCAA CTCCATGAGC TGCAAAATTG
0481 TCCATTGATA GATTCGCCGA TAAGACTGCG |
| Assemble Data |
12359R-4.IR_full 1 GAGGACACCGATTTGTCCACAAATTCCGCATACGAATCCGCACTCCAAATCGCGAGCAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12359R-4.in silico 1 GAGGACACCGATTTGTCCACAAATTCCGCATACGAATCCGCACTCCAAATCGCGAGCAAT 60
12359R-4.IR_full 61 GTGTCGGCAGCACGAGTAGTCGGTTCGGCAGTAGGACAGCGATTTTCGCCGTCGCCAGCA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12359R-4.in silico 61 GTGTCGGCAGCACGAGTAGTCGGTTCGGCAGTAGGACAGCGATTTTCGCCGTCGCCAGCA 120
12359R-4.IR_full 121 GCTCACCCGAACGTGATTGAGCGCGTCGCGTCTTCATGTGGACTCACGCCGCAGCACGTT 180
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
12359R-4.in silico 121 GCTCACCCGAACGTGATTGAGCGCGTCGCGTC-TCATGTGGACTCACGCCGCAGCACGTT 180
12359R-4.IR_full 181 TCCAAGTTGGGGTAATCCGTCAGTAGCGCCAAGAGGATCGGAAGAAGCAGCAGCCAACGC 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12359R-4.in silico 181 TCCAAGTTGGGGTAATCCGTCAGTAGCGCCAAGAGGATCGGAAGAAGCAGCAGCCAACGC 240
12359R-4.IR_full 241 CACAGCAACACAACTCCTATGGGCGGAGAACCAAGGTCTCCCGACATCGCACTTATTGCC 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12359R-4.in silico 241 CACAGCAACACAACTCCTATGGGCGGAGAACCAAGGTCTCCCGACATCGCACTTATTGCC 300
12359R-4.IR_full 301 AACTGAACAGGCTTTCGAGACATTGAACACTAATGCGTATTGTTCCCCGCCAGGGGATTC 360
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
12359R-4.in silico 301 AACTGAACAGGCATTCGAGACATTGAACACTAATGCGTATTGTTCCCCGCCAGGGGATTC 360
12359R-4.IR_full 361 ACGATTTACGTTCCCTAGCCAGAACTACTCGCCGCNGCTGCCGCGGTGTGTCCCAGTTCC 420
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
12359R-4.in silico 361 ACGATTTACGTTCCCTAGCCAGAACTACTCGCCGCTGCTGCCGCGGTGTGTCCCAGTTCC 420
12359R-4.IR_full 421 GAATCAGCGTTACTCTCCAGATGGATCGCCAATACATCAACTCCATGAGCTGCAAAATTG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12359R-4.in silico 421 GAATCAGCGTTACTCTCCAGATGGATCGCCAATACATCAACTCCATGAGCTGCAAAATTG 480
12359R-4.IR_full 481 TCCATTGATAGATTCGCCGATAAGANTGNG 510
||||||||||||||||||||||||| || |
12359R-4.in silico 481 TCCATTGATAGATTCGCCGATAAGACTGCG 510
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
491 |
0 |
0 |
0 |
NM_133134.2 |
CG12359-RA (Ulp1), mRNA |
| 0 |
0 |
2 |
5 |
4 |
NM_001038902.1 |
CG33993-RA (CG33993), mRNA |
| 0 |
0 |
2 |
2 |
4 |
NM_132272.1 |
CG11294-RA (CG11294), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_001038928.1 |
CG33986-RA (CG33986), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_206660.1 |
CG11265-RB, transcript variant B (CG11265), mRNA |
| 0 |
0 |
1 |
4 |
4 |
NM_135258.1 |
CG4497-RA (CG4497), mRNA |
| 0 |
0 |
1 |
4 |
3 |
NM_135832.2 |
CG16889-RA (adat), mRNA |
| 0 |
0 |
1 |
4 |
3 |
NM_001043165.1 |
CG40294-RA (CG40294), mRNA |
| 0 |
0 |
1 |
3 |
5 |
NM_176374.1 |
CG4761-RA (knrl), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_134812.2 |
CG7074-RA (mio), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_169089.2 |
CG1250-RB, transcript variant B (sec23), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_167000.1 |
CG32778-RA (CG32778), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_132125.1 |
CG4536-RA (CG4536), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_079496.2 |
CG14637-RA (abs), mRNA |
| 0 |
0 |
0 |
15 |
22 |
NM_137050.1 |
CG6209-RA (CG6209), mRNA |
| 0 |
0 |
0 |
6 |
11 |
NM_166897.1 |
CG11491-RC, transcript variant C (br), mRNA |
| 0 |
0 |
0 |
6 |
11 |
NM_166896.1 |
CG11491-RB, transcript variant B (br), mRNA |
| 0 |
0 |
0 |
6 |
6 |
NM_079046.2 |
CG6542-RA, transcript variant A (EDTP), mRNA |
| 0 |
0 |
0 |
6 |
6 |
NM_206151.1 |
CG6542-RB, transcript variant B (EDTP), mRNA |
| 0 |
0 |
0 |
6 |
6 |
NM_166894.1 |
CG11491-RA, transcript variant A (br), mRNA |
| 0 |
0 |
0 |
5 |
10 |
NM_001014727.1 |
CG12154-RB, transcript variant B (oc), mRNA |
| 0 |
0 |
0 |
5 |
10 |
NM_078536.3 |
CG12154-RA, transcript variant A (oc), mRNA |
| 0 |
0 |
0 |
5 |
6 |
NM_167521.2 |
CG32575-RA, transcript variant A (hang), mRNA |
| 0 |
0 |
0 |
5 |
5 |
NM_130616.2 |
CG4290-RA (CG4290), mRNA |
| 0 |
0 |
0 |
4 |
10 |
NM_168739.2 |
CG32180-RC, transcript variant C (Eip74EF), mRNA |
| 0 |
0 |
0 |
4 |
10 |
NM_168740.2 |
CG32180-RA, transcript variant A (Eip74EF), mRNA |
| 0 |
0 |
0 |
4 |
8 |
NM_168741.2 |
CG32180-RB, transcript variant B (Eip74EF), mRNA |
| 0 |
0 |
0 |
4 |
8 |
NM_001014590.1 |
CG32180-RD, transcript variant D (Eip74EF), mRNA |
| 0 |
0 |
0 |
4 |
7 |
NM_130571.1 |
CG14796-RA (CG14796), mRNA |
| 0 |
0 |
0 |
4 |
4 |
NM_136707.2 |
CG1371-RA (CG1371), mRNA |
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