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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 12352R-1 
 Symbol san  Full Name separation anxiety 
 CG No CG12352  Old CG No CG12352 
 Synonyms DmAAF34715, CG12352, span, san 
 Accession No (Link to NCBI) NM_080040.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees pupal lethal 
 Map Viewer
 Reference
[Please submit your publication]
Mummery-Widmer JL, Yamazaki M, Stoeger T, Novatchkova M, Bhalerao S, Chen D, Dietzl G, Dickson BJ, Knoblich JA.
Genome-wide analysis of Notch signalling in Drosophila by transgenic RNAi.
Nature (2009) 458(7241) 987-92 [ PubMed ID = 19363474 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgACAACGACATTGTAGTGGGCG 
 Primer Seq. 3'
aatctagaggtaccCTGTCGTGCTTTACTACGTGA 
 Predicted Fragment Size
389 
 IR fragment full Seq
0001 ACAACGACAT TGTAGTGGGG CGCCGTCTGC TGTCGCATCG ACAACACTGA GAACCAAGCG 
0061 GCGCCTGTAT ATCATGACCC TAGGATGCCT CTCCCCGTAC CGGCGCCTGG GCATCGGCAC 
0121 AGTTATGTTC GAGCACATTA TGAACTTCGC CGAGAAGGAC GGAAACTTCG ACAGCATTTT 
0181 TCTACATGTG CAAATCAACA ACAACGGAGC CATCGAGTTC TATAAGAAGT TTGGTTTCGA 
0241 GATTGTTGAC ACCAAGGAGC AATACTATAA GCGCATCGAG CCGGCGGACG CTCATGTACT 
0301 GCAAAAGACT CTGCGCCGCA CTGCACCCAA CTCAAACAGC ACCGCCACCA GCACCACCGC 
0361 GAACTCAAAT TCACGTAGTA AAGCACGACA G 
 in silico PCR Fragment
0001 ACAACGACAT TGTAGT-GGG CGCCGTCTGT TGTCGCATCG ACAACACTGA GAACC-AGCG 
0061 GCGCCTGTAT ATCATGACCC TAGGATGCCT CTCCCCGTAC CGGCGCCTGG GCATCGGCAC 
0121 AGTTATGTTC GAGCACATTA TGAACTTCGC CGAGAAGGAC GGAAACTTCG ACAGCATTTT 
0181 TCTACATGTG CAAATCAACA ACAACGGAGC CATCGAGTTC TATAAGAAGT TTGGTTTCGA 
0241 GATTGTTGAC ACCAAGGAGC AATACTATAA GCGCATCGAG CCGGCGGACG CTCATGTACT 
0301 GCAAAAGACT CTGCGCCGCA CTGCACCCAA CTCAAACAGC ACCGCCACCA GCACCACCGC 
0361 GAACTCAAAT TCACGTAGTA AAGCACGACA G 
 Assemble Data

12352R-1.IR_full       1   ACAACGACATTGTAGTGGGGCGCCGTCTGCTGTCGCATCGACAACACTGAGAACCAAGCG 60
                           |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||
12352R-1.in silico     1   ACAACGACATTGTAGT-GGGCGCCGTCTGTTGTCGCATCGACAACACTGAGAACC-AGCG 60


12352R-1.IR_full       61  GCGCCTGTATATCATGACCCTAGGATGCCTCTCCCCGTACCGGCGCCTGGGCATCGGCAC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12352R-1.in silico     61  GCGCCTGTATATCATGACCCTAGGATGCCTCTCCCCGTACCGGCGCCTGGGCATCGGCAC 120


12352R-1.IR_full       121 AGTTATGTTCGAGCACATTATGAACTTCGCCGAGAAGGACGGAAACTTCGACAGCATTTT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12352R-1.in silico     121 AGTTATGTTCGAGCACATTATGAACTTCGCCGAGAAGGACGGAAACTTCGACAGCATTTT 180


12352R-1.IR_full       181 TCTACATGTGCAAATCAACAACAACGGAGCCATCGAGTTCTATAAGAAGTTTGGTTTCGA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12352R-1.in silico     181 TCTACATGTGCAAATCAACAACAACGGAGCCATCGAGTTCTATAAGAAGTTTGGTTTCGA 240


12352R-1.IR_full       241 GATTGTTGACACCAAGGAGCAATACTATAAGCGCATCGAGCCGGCGGACGCTCATGTACT 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12352R-1.in silico     241 GATTGTTGACACCAAGGAGCAATACTATAAGCGCATCGAGCCGGCGGACGCTCATGTACT 300


12352R-1.IR_full       301 GCAAAAGACTCTGCGCCGCACTGCACCCAACTCAAACAGCACCGCCACCAGCACCACCGC 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12352R-1.in silico     301 GCAAAAGACTCTGCGCCGCACTGCACCCAACTCAAACAGCACCGCCACCAGCACCACCGC 360


12352R-1.IR_full       361 GAACTCAAATTCACGTAGTAAAGCACGACAG 391
                           |||||||||||||||||||||||||||||||
12352R-1.in silico     361 GAACTCAAATTCACGTAGTAAAGCACGACAG 391

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   371  NM_080040.2  CG12352-RA (san), mRNA 
0.53   NM_001042799.1  CG10966-RB, transcript variant B (rdgA), mRNA 
0.53   NM_078537.2  CG10966-RA, transcript variant A (rdgA), mRNA 
0.26   NM_079307.1  CG7260-RA (byn), mRNA 
0.26   NM_169507.1  CG8784-RA (CG8784), mRNA 
0   NM_132525.1  CG15740-RA (CG15740), mRNA 
0   NM_168638.2  CG6117-RB, transcript variant B (Pka-C3), mRNA 
0   NM_079373.2  CG6117-RA, transcript variant A (Pka-C3), mRNA 
0   10  18  NM_132457.1  CG11122-RA (CG11122), mRNA 
0   NM_132973.1  CG18258-RA (CG18258), mRNA 
0   17  NM_080362.2  CG31868-RA (Samuel), mRNA 
0   17  NM_141397.2  CG1021-RB, transcript variant B (CG1021), mRNA 
0   17  NM_169141.1  CG1021-RA, transcript variant A (CG1021), mRNA 
0   10  NM_175956.1  CG33003-RA (CG33003), mRNA 
0   NM_141375.1  CG15597-RA (CG15597), mRNA 
0   14  39  NM_143342.1  CG5514-RB, transcript variant B (CG5514), mRNA 
0   14  39  NM_170361.1  CG5514-RA, transcript variant A (CG5514), mRNA 
0   24  NM_132370.1  CG2989-RA (CG2989), mRNA 
0   NM_165838.2  CG17835-RC, transcript variant C (inv), mRNA 
0   NM_078975.3  CG17835-RB, transcript variant B (inv), mRNA 
0   NM_165837.2  CG17835-RA, transcript variant A (inv), mRNA 
0   NM_165839.2  CG17835-RD, transcript variant D (inv), mRNA 
0   NM_165760.2  CG18408-RB, transcript variant B (CAP), mRNA 
0   NM_132655.1  CG1662-RA (CG1662), mRNA 
0   NM_057980.3  CG4605-RA (Acp32CD), mRNA 
0   NM_176142.1  CG2368-RG, transcript variant G (psq), mRNA 
0   NM_165792.1  CG2368-RE, transcript variant E (psq), mRNA 
0   NM_001014519.1  CG2368-RJ, transcript variant J (psq), mRNA 
0   NM_165791.1  CG2368-RD, transcript variant D (psq), mRNA 
0   NM_176143.1  CG2368-RH, transcript variant H (psq), mRNA 

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