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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 12225R-1 
 Symbol Spt6  Full Name Spt6 
 CG No CG12225  Old CG No CG12225 
 Synonyms Dspt6, dSpt6, spt 6, CG12225, SPT6, l(1)G0063, spt6, Spt6 
 Accession No (Link to NCBI) NM_143705.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Jia D, Soylemez M, Calvin G, Bornmann R, Bryant J, Hanna C, Huang YC, Deng WM.
A large-scale in vivo RNAi screen to identify genes involved in Notch-mediated follicle cell differentiation and cell cycle switches.
Sci Rep (2015) 5 12328 [ PubMed ID = 26205122 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgAGGAATCGGAGGAGGAGGAAG 
 Primer Seq. 3'
aatctagaggtaccATCTGCGTCCGACTCCGTATC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 AGGAATCGGA GGAGGAGGAA GAATTGGACG TCAACGAGCG CAAGAGACTC AAGAAACTGA 
0061 AGGCGGCCGT CTCCGATAGT AGCGAAGAAG AAGAAGACGA CGAGGAACGG CTGCGCGAAG 
0121 AGCTCAAAGA TCTGATCGAC GACAATCCCA TCGAGGAGGA CGATGGCAGT GGTTACGATT 
0181 CCGATGGCGT CGGCAGCGGC AAGAAGCGCA AAAAGCACGA GGACGACGAT CTGGACGATC 
0241 GACTGGAGGA CGACGACTAC GATCTTATCG AGGAGAATCT GGGCGTCAAA GTCGAGAGAC 
0301 GGAAGCGGTT CAAGCGTCTG CGTCGCATCC ACGACAACGA AAGCGATGGC GAGGAGCAGC 
0361 ACGTGGACGA GGGTATGGTG CGTGAGCAGA TTGCCGAGCA GTTGTTCGAC GAGAACGATG 
0421 AGAGCATTGG TCATCGCAGC GAGCGCAGTC ACAGGGAGGC GGACGACTAC GACGACGTGG 
0481 ATACGGAGTC GGACGCAGAT  
 in silico PCR Fragment
0001 AGGAATCGGA GGAGGAGGAA GAATTGGACG TCAACGAGCG CAAGAGACTC AAGAAACTGA 
0061 AGGCGGCCGT CTCCGATAGT AGCGAAGAAG AAGAAGACGA CGAGGAACGG CTGCGCGAAG 
0121 AGCTCAAAGA TCTGATCGAC GACAATCCCA TCGAGGAGGA CGATGGCAGT GGTTACGATT 
0181 CCGATGGCGT CGGCAGCGGC AAGAAGCGCA AAAAGCACGA GGACGACGAT CTGGACGATC 
0241 GACTGGAGGA CGACGACTAC GATCTTATCG AGGAGAATCT GGGCGTCAAA GTCGAGAGAC 
0301 GGAAGCGGTT CAAGCGTCTG CGTCGCATCC ACGACAACGA AAGCGATGGC GAGGAGCAGC 
0361 ACGTGGACGA GGGTCTGGTG CGTGAGCAGA TTGCCGAGCA GTTGTTCGAC GAGAACGATG 
0421 AGAGCATTGG TCATCGCAGC GAGCGCAGTC ACAGGGAGGC GGACGACTAC GACGACGTGG 
0481 ATACGGAGTC GGACGCAGAT  
 Assemble Data

12225R-1.IR_full       1   AGGAATCGGAGGAGGAGGAAGAATTGGACGTCAACGAGCGCAAGAGACTCAAGAAACTGA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12225R-1.in silico     1   AGGAATCGGAGGAGGAGGAAGAATTGGACGTCAACGAGCGCAAGAGACTCAAGAAACTGA 60


12225R-1.IR_full       61  AGGCGGCCGTCTCCGATAGTAGCGAAGAAGAAGAAGACGACGAGGAACGGCTGCGCGAAG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12225R-1.in silico     61  AGGCGGCCGTCTCCGATAGTAGCGAAGAAGAAGAAGACGACGAGGAACGGCTGCGCGAAG 120


12225R-1.IR_full       121 AGCTCAAAGATCTGATCGACGACAATCCCATCGAGGAGGACGATGGCAGTGGTTACGATT 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12225R-1.in silico     121 AGCTCAAAGATCTGATCGACGACAATCCCATCGAGGAGGACGATGGCAGTGGTTACGATT 180


12225R-1.IR_full       181 CCGATGGCGTCGGCAGCGGCAAGAAGCGCAAAAAGCACGAGGACGACGATCTGGACGATC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12225R-1.in silico     181 CCGATGGCGTCGGCAGCGGCAAGAAGCGCAAAAAGCACGAGGACGACGATCTGGACGATC 240


12225R-1.IR_full       241 GACTGGAGGACGACGACTACGATCTTATCGAGGAGAATCTGGGCGTCAAAGTCGAGAGAC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12225R-1.in silico     241 GACTGGAGGACGACGACTACGATCTTATCGAGGAGAATCTGGGCGTCAAAGTCGAGAGAC 300


12225R-1.IR_full       301 GGAAGCGGTTCAAGCGTCTGCGTCGCATCCACGACAACGAAAGCGATGGCGAGGAGCAGC 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12225R-1.in silico     301 GGAAGCGGTTCAAGCGTCTGCGTCGCATCCACGACAACGAAAGCGATGGCGAGGAGCAGC 360


12225R-1.IR_full       361 ACGTGGACGAGGGTATGGTGCGTGAGCAGATTGCCGAGCAGTTGTTCGACGAGAACGATG 420
                           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
12225R-1.in silico     361 ACGTGGACGAGGGTCTGGTGCGTGAGCAGATTGCCGAGCAGTTGTTCGACGAGAACGATG 420


12225R-1.IR_full       421 AGAGCATTGGTCATCGCAGCGAGCGCAGTCACAGGGAGGCGGACGACTACGACGACGTGG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12225R-1.in silico     421 AGAGCATTGGTCATCGCAGCGAGCGCAGTCACAGGGAGGCGGACGACTACGACGACGTGG 480


12225R-1.IR_full       481 ATACGGAGTCGGACGCAGAT 500
                           ||||||||||||||||||||
12225R-1.in silico     481 ATACGGAGTCGGACGCAGAT 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  39  NM_143705.2  CG12225-RA (Spt6), mRNA 
0.41   11  NM_168638.2  CG6117-RB, transcript variant B (Pka-C3), mRNA 
0.41   11  NM_079373.2  CG6117-RA, transcript variant A (Pka-C3), mRNA 
0.41   18  NM_078592.2  CG11172-RA (NFAT), mRNA 
0   15  NM_169844.1  CG31149-RA (CG31149), mRNA 
0   NM_057962.4  CG1782-RA (Uba1), mRNA 
0   11  15  NM_001043091.1  CG5748-RC, transcript variant C (Hsf), mRNA 
0   11  15  NM_057227.3  CG5748-RA, transcript variant A (Hsf), mRNA 
0   11  15  NM_001043090.1  CG5748-RD, transcript variant D (Hsf), mRNA 
0   11  15  NM_001043092.1  CG5748-RB, transcript variant B (Hsf), mRNA 
0   10  25  NM_169795.1  CG7187-RC, transcript variant C (Ssdp), mRNA 
0   10  25  NM_142431.1  CG7187-RA, transcript variant A (Ssdp), mRNA 
0   10  25  NM_169794.1  CG7187-RB, transcript variant B (Ssdp), mRNA 
0   NM_140209.1  CG7551-RB (CG7551), mRNA 
0   NM_166055.1  CG10108-RA (phyl), mRNA 
0   NM_137203.2  CG8192-RA (CG8192), mRNA 
0   13  NM_130523.2  CG11638-RA (CG11638), mRNA 
0   NM_144017.1  CG18682-RA (CG18682), mRNA 
0   14  NM_167625.1  CG6500-RA, transcript variant A (Bx), mRNA 
0   14  NM_176758.1  CG6500-RC, transcript variant C (Bx), mRNA 
0   33  NM_132989.2  CG8568-RA (CG8568), mRNA 
0   NM_057796.2  CG10379-RA (mbc), mRNA 
0   15  NM_169423.2  CG17342-RB, transcript variant B (Lk6), mRNA 
0   15  NM_143729.2  CG17342-RA, transcript variant A (Lk6), mRNA 
0   NM_143105.2  CG11857-RA (CG11857), mRNA 
0   NM_206099.1  CG8878-RB, transcript variant B (CG8878), mRNA 
0   NM_136889.2  CG8878-RA, transcript variant A (CG8878), mRNA 
0   13  NM_079029.3  CG8295-RA, transcript variant A (Mlf), mRNA 
0   13  NM_166123.3  CG8295-RB, transcript variant B (Mlf), mRNA 
0   13  NM_166122.2  CG8295-RC, transcript variant C (Mlf), mRNA 

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