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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 12205R-2 
 Symbol Bsg25A  Full Name Blastoderm-specific gene 25A 
 CG No CG12205  Old CG No CG12205 
 Synonyms bsg25A, clone 1.70, anon-EST:Liang-1.70, CG12205, Bsg25A 
 Accession No (Link to NCBI) NM_078748.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATGATTAACCGCCGTCAGCGT 
 Primer Seq. 3'
aatctagaggtaccTGCTCATGAGACTGTTTGTGC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ATGATTAACC GCCGTCAGCG TTTGGAATTC GCCCTGACCC TATTGCCCTA TGATCCCGAG 
0061 ACAGTTCAGT GTGTCTGAAA CGCAGAAAAA AAGTGGAGGC GATCATCGCC CGCCTGCGAA 
0121 CGGATGACTC CTTTACGGAG GAGGAGAGCG ATGACTGCAA GGTGCGGCGC ATTCAAGATG 
0181 CAAATGAGTT TGCCGATTCC GCCATGCGAC ACATCGAAAT GTCCGATAGT GGCAAGCTGA 
0241 GCACTCTGGA AACTCTTACA CTGGCTGCTG AGAAGCTGCT AAGGACACAG CGTTCACCGG 
0301 ATCAGGATTT CGATGACATG GTGCAGGATG TGGAGTACTC GCAGCTGATG AGGAACACCA 
0361 TCCAGGCGGT AAATGAGGCG CGTTTGAAGC TTCTCCAGCA ATGGGAGCGC AGTAAgNGCA 
0421 AGGCTCTCGA TCTCCTCACC ATCGAAATTG AAAAGGTCCA GGAAATGGAT CAGGAGCCAG 
0481 AGCACAAACA GTCTCATGAT GCA 
 in silico PCR Fragment
0001 ATGATTAACC GCCGTCAGCG TTTGGAATTC GCCCTGACCC TATTGCCCTA TGATCCCGAG 
0061 ACAGTTCAGT -TGTCTGAAA CGCAG-AAAA AAGTGGAGGC GATCATCGCC CGCCTGCGAA 
0121 CGGATGACTC CTTTACGGAG GAGGAGAGCG ATGACTGCAA GGTGCGGCGC ATTCAAGATG 
0181 CAAATGAGTT TGCCGATTCC GCCATGCGAC ACATCGAAAT GTCCGATAGT GGCAAGCTGA 
0241 GCACTCTGGA AACTCTTACA CTGGCTGCTG AGAAGCTGCT AAGGACACAG CGTTCACCGG 
0301 ATCAGGATTT CGATGACATG GTGCAGGATG TGGAGTACTC GCAGCTGATG AGGAACACCA 
0361 TCCAGGCGGT AAATGAGGCG CGTTTGAAGC TTCTCCAGCA ATGGGAGCGC AGTAAGCGCA 
0421 AGGCTCTCGA TCTCCTCACC ATCGAAATTG AAAAGGTCCA GGAAATGGAT CAGGAGCCAG 
0481 AGCACAAACA GTCTCATGA- GCA 
 Assemble Data

12205R-2.IR_full       1   ATGATTAACCGCCGTCAGCGTTTGGAATTCGCCCTGACCCTATTGCCCTATGATCCCGAG 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12205R-2.in silico     1   ATGATTAACCGCCGTCAGCGTTTGGAATTCGCCCTGACCCTATTGCCCTATGATCCCGAG 60


12205R-2.IR_full       61  ACAGTTCAGTGTGTCTGAAACGCAGAAAAAAAGTGGAGGCGATCATCGCCCGCCTGCGAA 120
                           |||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
12205R-2.in silico     61  ACAGTTCAGT-TGTCTGAAACGCAG-AAAAAAGTGGAGGCGATCATCGCCCGCCTGCGAA 120


12205R-2.IR_full       121 CGGATGACTCCTTTACGGAGGAGGAGAGCGATGACTGCAAGGTGCGGCGCATTCAAGATG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12205R-2.in silico     121 CGGATGACTCCTTTACGGAGGAGGAGAGCGATGACTGCAAGGTGCGGCGCATTCAAGATG 180


12205R-2.IR_full       181 CAAATGAGTTTGCCGATTCCGCCATGCGACACATCGAAATGTCCGATAGTGGCAAGCTGA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12205R-2.in silico     181 CAAATGAGTTTGCCGATTCCGCCATGCGACACATCGAAATGTCCGATAGTGGCAAGCTGA 240


12205R-2.IR_full       241 GCACTCTGGAAACTCTTACACTGGCTGCTGAGAAGCTGCTAAGGACACAGCGTTCACCGG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12205R-2.in silico     241 GCACTCTGGAAACTCTTACACTGGCTGCTGAGAAGCTGCTAAGGACACAGCGTTCACCGG 300


12205R-2.IR_full       301 ATCAGGATTTCGATGACATGGTGCAGGATGTGGAGTACTCGCAGCTGATGAGGAACACCA 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12205R-2.in silico     301 ATCAGGATTTCGATGACATGGTGCAGGATGTGGAGTACTCGCAGCTGATGAGGAACACCA 360


12205R-2.IR_full       361 TCCAGGCGGTAAATGAGGCGCGTTTGAAGCTTCTCCAGCAATGGGAGCGCAGTAAGNGCA 420
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
12205R-2.in silico     361 TCCAGGCGGTAAATGAGGCGCGTTTGAAGCTTCTCCAGCAATGGGAGCGCAGTAAGCGCA 420


12205R-2.IR_full       421 AGGCTCTCGATCTCCTCACCATCGAAATTGAAAAGGTCCAGGAAATGGATCAGGAGCCAG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12205R-2.in silico     421 AGGCTCTCGATCTCCTCACCATCGAAATTGAAAAGGTCCAGGAAATGGATCAGGAGCCAG 480


12205R-2.IR_full       481 AGCACAAACAGTCTCATGATGCA 503
                           ||||||||||||||||||| |||
12205R-2.in silico     481 AGCACAAACAGTCTCATGA-GCA 503

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_078748.2  CG12205-RA (Bsg25A), mRNA 
0   NM_057245.2  CG6189-RA (l(1)1Bi), mRNA 
0   NM_136188.2  CG10949-RA (CG10949), mRNA 
0   NM_170139.1  CG31132-RA (BRWD3), mRNA 
0   NM_134768.3  CG17660-RA (CG17660), mRNA 
0   NM_136087.1  CG15171-RA (robl37BC), mRNA 
0   NM_167487.1  CG32577-RA (disco-r), mRNA 
0   NM_001038890.1  CG34056-RA (CG34056), mRNA 
0   NM_141661.1  CG8312-RA, transcript variant A (CG8312), mRNA 
0   NM_176438.1  CG8312-RB, transcript variant B (CG8312), mRNA 
0   NM_143111.2  CG11891-RA, transcript variant A (CG11891), mRNA 
0   NM_143110.2  CG11889-RA, transcript variant A (CG11889), mRNA 
0   NM_140615.1  CG13041-RA (CG13041), mRNA 
0   NM_165739.1  CG2275-RB, transcript variant B (Jra), mRNA 
0   NM_057238.3  CG2275-RA, transcript variant A (Jra), mRNA 
0   NM_168057.2  CG14995-RD, transcript variant D (CG14995), mRNA 
0   NM_168058.2  CG14995-RC, transcript variant C (CG14995), mRNA 
0   NM_168059.2  CG14995-RA, transcript variant A (CG14995), mRNA 
0   NM_139600.3  CG14995-RB, transcript variant B (CG14995), mRNA 
0   NM_001043210.1  CG41516-RA (CG41516), mRNA 
0   11  NM_058106.3  CG6582-RA (Aac11), mRNA 
0   NM_168038.1  CG32264-RD, transcript variant D (CG32264), mRNA 
0   NM_206268.1  CG32264-RC, transcript variant C (CG32264), mRNA 
0   NM_168037.1  CG32264-RA, transcript variant A (CG32264), mRNA 
0   NM_168039.1  CG32264-RB, transcript variant B (CG32264), mRNA 
0   10  NM_142959.2  CG6129-RB, transcript variant B (CG6129), mRNA 
0   NM_176553.1  CG6129-RC, transcript variant C (CG6129), mRNA 
0   NM_165155.1  CG31737-RA (CG31737), mRNA 
0   NM_168050.2  CG14987-RA, transcript variant A (Gr64d), mRNA 
0   NM_001031934.1  CG14987-RB (Gr64d), mRNA 

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