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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 1212R-3 
 Symbol p130CAS  Full Name p130CAS 
 CG No CG1212  Old CG No CG1212 
 Synonyms CG1212, CT1293, p130CAS 
 Accession No (Link to NCBI) NM_138158.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Park SH, Lee CW, Lee JH, Park JY, Roshandell M, Brennan CA, Choe KM.
Requirement for and polarized localization of integrin proteins during Drosophila wound closure.
Mol Biol Cell (2018) 29(18) 2137-2147 [ PubMed ID = 29995573 ] [ RRC reference ]

Dourlen P, Fernandez-Gomez FJ, Dupont C, Grenier-Boley B, Bellenguez C, Obriot H, Caillierez R, Sottejeau Y, Chapuis J, Bretteville A, Abdelfettah F, Delay C, Malmanche N, Soininen H, Hiltunen M, Galas MC, Amouyel P, Sergeant N, Buée L, Lambert JC, Dermaut B.
Functional screening of Alzheimer risk loci identifies PTK2B as an in vivo modulator and early marker of Tau pathology.
Mol Psychiatry (2017) 22(6) 874-883 [ PubMed ID = 27113998 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGAGAACGGTTCCGTCATCAGT 
 Primer Seq. 3'
aatctagaggtaccAAGATCAGGGGTCGTGGCACA 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 NAGAACGGTT CCGTCATCAG TGCGGTATCG TCCTCAAACT CAAATTCGGG AGGGGCTAGT 
0061 AGTGGACTCG GATCGGAGTC GGTGTCTCGT GTCTCGAGGA GATCGTGGCA CGCCTCGCCG 
0121 ACAAAGGTAA TCACACCACA GCGACACGGT GATGTATACA TCTACAATTA CTCGCCAGGA 
0181 TCAGCGACTG GATCTGGAGC AAGAGCCGCG CCCAGNACGC CGCAGCAGCA GATCTATAGC 
0241 AACCAAAGCA TCTACCAGAA CTTTGCAATG ATGTCCAGTC CTCGCCAAAA CGCAAGTGGC 
0301 NAGCGAGTTT GAGACCTATG ACATACCCAA GCCGGCCACG CCCGTTCCGC TGAACTACGA 
0361 CAGTCCCAGA AGCGGTCTTC CGAAGGCTTC TAACTCTACA ACGACCTCCA GCTCCAGCCT 
0421 AGGCACCCGG TTTGAGACAC TCAAGAGCGT GGCCGCATCC ATTGCGGAGG AGTCTTACGA 
0481 TGTGCCACGA CCCCTGATCT T 
 in silico PCR Fragment
0001 GAGAACGGTT CCGTCATCAG TGCGGTATCG TCCTCAAACT CAAATTCGGG AGGGGCTAGT 
0061 AGTGGACTCG GATCGGAGTC GGTGTCTCGT GTCTCGAGGA GATCGTGGCA CGCCTCGCCG 
0121 ACAAAGGTAA TCACACCACA GCGACACGGT GATGTATACA TCTACAATTA CTCGCCAGGA 
0181 TCAGCGACTG GATCTGGAGC AAGAGCCGCG CCCAGCACGC CGCAGCAGCA GATCTATAGC 
0241 AACCAAAGCA TCTACCAGAA CTTTGCAATG ATGTCCAGTC CTCGCCAAAA CGCAAGTGGC 
0301 -AGCGAGTTT GAGACCTATG ACATACCCAA GCCGGCCACG CCCGTTCCGC TGAACTACGA 
0361 CAGTCCCAGA AGCGGTCTTC CGAAGGCTTC TAACTCTACA ACGACCTCCA GCTCCAGCCT 
0421 AGGCACCCGG TTTGAGACAC TCAAGAGCGT GGCCGCATCC ATTGCGGAGG AGTCTTACGA 
0481 TGTGCCACGA CCCCTGATCT T 
 Assemble Data

1212R-3.IR_full        1   AGAACGGTTCCGTCATCAGTGCGGTATCGTCCTCAAACTCAAATTCGGGAGGGGCTAGT 59
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1212R-3.in silico      1   AGAACGGTTCCGTCATCAGTGCGGTATCGTCCTCAAACTCAAATTCGGGAGGGGCTAGT 59


1212R-3.IR_full       61  AGTGGACTCGGATCGGAGTCGGTGTCTCGTGTCTCGAGGAGATCGTGGCACGCCTCGCCG 119
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1212R-3.in silico     61  AGTGGACTCGGATCGGAGTCGGTGTCTCGTGTCTCGAGGAGATCGTGGCACGCCTCGCCG 119


1212R-3.IR_full       121 ACAAAGGTAATCACACCACAGCGACACGGTGATGTATACATCTACAATTACTCGCCAGGA 179
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1212R-3.in silico     121 ACAAAGGTAATCACACCACAGCGACACGGTGATGTATACATCTACAATTACTCGCCAGGA 179


1212R-3.IR_full       181 TCAGCGACTGGATCTGGAGCAAGAGCCGCGCCCAGNACGCCGCAGCAGCAGATCTATAGC 239
                          ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
1212R-3.in silico     181 TCAGCGACTGGATCTGGAGCAAGAGCCGCGCCCAGCACGCCGCAGCAGCAGATCTATAGC 239


1212R-3.IR_full       241 AACCAAAGCATCTACCAGAACTTTGCAATGATGTCCAGTCCTCGCCAAAACGCAAGTGGC 299
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1212R-3.in silico     241 AACCAAAGCATCTACCAGAACTTTGCAATGATGTCCAGTCCTCGCCAAAACGCAAGTGGC 299


1212R-3.IR_full        301 AGCGAGTTTGAGACCTATGACATACCCAAGCCGGCCACGCCCGTTCCGCTGAACTACGA 358
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1212R-3.in silico      301 AGCGAGTTTGAGACCTATGACATACCCAAGCCGGCCACGCCCGTTCCGCTGAACTACGA 358


1212R-3.IR_full       361 CAGTCCCAGAAGCGGTCTTCCGAAGGCTTCTAACTCTACAACGACCTCCAGCTCCAGCCT 418
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1212R-3.in silico     361 CAGTCCCAGAAGCGGTCTTCCGAAGGCTTCTAACTCTACAACGACCTCCAGCTCCAGCCT 418


1212R-3.IR_full       421 AGGCACCCGGTTTGAGACACTCAAGAGCGTGGCCGCATCCATTGCGGAGGAGTCTTACGA 478
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1212R-3.in silico     421 AGGCACCCGGTTTGAGACACTCAAGAGCGTGGCCGCATCCATTGCGGAGGAGTCTTACGA 478


1212R-3.IR_full       481 TGTGCCACGACCCCTGATCTT 499
                          |||||||||||||||||||||
1212R-3.in silico     481 TGTGCCACGACCCCTGATCTT 499

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_138158.2  CG1212-RA, transcript variant A (p130CAS), mRNA 
73.85   356  NM_167797.1  CG1212-RB, transcript variant B (p130CAS), mRNA 
0   NM_141889.2  CG3169-RA (Spt3), mRNA 
0   NM_137664.1  CG9025-RA, transcript variant A (CG9025), mRNA 
0   NM_166408.1  CG9025-RB, transcript variant B (CG9025), mRNA 
0   NM_142880.2  CG13827-RA (CG13827), mRNA 
0   NM_078569.2  CG1554-RA (RpII215), mRNA 
0   NM_132420.2  CG32676-RA (CG32676), mRNA 
0   NM_057858.3  CG9985-RA (sktl), mRNA 
0   NM_166341.1  CG30127-RA (CG30127), mRNA 
0   NM_079282.1  CG3322-RA (LanB2), mRNA 
0   NM_169223.2  CG31369-RA (PQBP-1), mRNA 
0   23  NM_136257.2  CG8677-RA (CG8677), mRNA 
0   19  NM_165362.1  CG31626-RA, transcript variant A (CG31626), mRNA 
0   19  NM_165363.1  CG31626-RB, transcript variant B (CG31626), mRNA 
0   NM_136237.2  CG9265-RA (CG9265), mRNA 
0   NM_078717.2  CG3696-RA, transcript variant A (kis), mRNA 
0   NM_001014518.1  CG2368-RK, transcript variant K (psq), mRNA 
0   NM_206086.1  CG2368-RC, transcript variant C (psq), mRNA 
0   NM_176143.1  CG2368-RH, transcript variant H (psq), mRNA 
0   NM_165790.1  CG2368-RA, transcript variant A (psq), mRNA 
0   NM_165791.1  CG2368-RD, transcript variant D (psq), mRNA 
0   NM_001014519.1  CG2368-RJ, transcript variant J (psq), mRNA 
0   NM_165792.1  CG2368-RE, transcript variant E (psq), mRNA 
0   NM_176142.1  CG2368-RG, transcript variant G (psq), mRNA 
0   NM_001014517.1  CG2368-RL, transcript variant L (psq), mRNA 
0   NM_001014520.1  CG2368-RI, transcript variant I (psq), mRNA 
0   NM_078962.2  CG2368-RB, transcript variant B (psq), mRNA 
0   NM_176141.1  CG2368-RF, transcript variant F (psq), mRNA 
0   NM_136553.2  CG8639-RA (Cirl), mRNA 

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