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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 12125R-2 
 Symbol CG12125  Full Name CG12125 
 CG No CG12125  Old CG No CG12125 
 Synonyms CG12125 
 Accession No (Link to NCBI) NM_132248.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees pupal lethal 
 Map Viewer
 Reference
[Please submit your publication]
Umetsu D, Dunst S, Dahmann C.
An RNA interference screen for genes required to shape the anteroposterior compartment boundary in Drosophila identifies the Eph receptor.
PLoS One (2014) 9(12) e114340 [ PubMed ID = 25473846 ] [ RRC reference ]

Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCCTGCTGCCCTTTCGCGTTTC 
 Primer Seq. 3'
aatctagaggtaccGCAGGTTTTGGATCTCGCGAC 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CCTGCTGCCC TTTCGCGTTT CCACCACCAC AAAGGTTGTG CTCTTCTCAC TGACCGCCGG 
0061 CGTGGNCCTA ATGAGCGTAC TCTCCCGATT TCTGCGACGT CGCAAGCCAC CGCGTCCGCC 
0121 TCGTCGAGCC AGGAAGTACA CGGGTCGGCG CAACCGCAAC AGCATGCGCA GTCCAAACGA 
0181 TCTAATCTCG ATAGCCGGAT CTAAGGCCTC GGCCAGATCG GGGAGTCCTG TGGGCTCCAC 
0241 ACTGGCCTAC TCGGATCGCC TGTCCATGGC GTCCGGCTCG ATTGGCGTTG GTGTATTGGG 
0301 CGTACAAAAT GCCGGTCCTG GCAGCTCGGT AGTCACACAA CTGACGGCCC AACAGTTGGG 
0361 CATGATGGGC ATGGAGGCAC TGGACACAGT GATCAACTTC TGGGAGGATG CCCTGGCGGC 
0421 ACACTACTCG CCCGGCGGTT TGCCCGCCCT GTTGACCACG GCGGAGGACT CCGAGTTCTG 
0481 TCGCGAGATC CAANAACCTG C 
 in silico PCR Fragment
0001 CCTGCTGCCC TTTCGCGTTT CCACCACCAC AAAGGTTGTG CTCTTCTCAC TGACCGCCGG 
0061 CGTGGCCCTA ATGAGCGTAC TCTCCCGATT TCTGCGACGT CGCAAGCCAC CGCGTCCGCC 
0121 TCGTCGAGCC AGGAAGTACA CGGGTCGGCG CAACCGCAAC AGCATGCGCA GTCCAAACGA 
0181 TCTAATCTCG ATAGCCGGAT CTAAGGCCTC GGCCAGATCG GGGAGTCCTG TGGGCTCCAC 
0241 ACTGGCCTAC TCGGATCGCC TGTCCATGGC GTCCGGCTCG ATTGGCGTTG GTGTATTGGG 
0301 CGTACAAAAT GCCGGTCCTG GCAGCTCGGT AGTCACACAA CTGACGGCCC AACAGTTGGG 
0361 CATGATGGGC ATGGAGGCAC TGGACACAGT GATCAACTTC TGGGAGGATG CCCTGGCGGC 
0421 ACACTACTCG CCCGGCGGTT TGCCCGCCCT GTTGACCACG GCGGAGGACT CCGAGTTCTG 
0481 TCGCGAGATC CAA-AACCTG C 
 Assemble Data

12125R-2.IR_full       1   CCTGCTGCCCTTTCGCGTTTCCACCACCACAAAGGTTGTGCTCTTCTCACTGACCGCCGG 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12125R-2.in silico     1   CCTGCTGCCCTTTCGCGTTTCCACCACCACAAAGGTTGTGCTCTTCTCACTGACCGCCGG 60


12125R-2.IR_full       61  CGTGGNCCTAATGAGCGTACTCTCCCGATTTCTGCGACGTCGCAAGCCACCGCGTCCGCC 120
                           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
12125R-2.in silico     61  CGTGGCCCTAATGAGCGTACTCTCCCGATTTCTGCGACGTCGCAAGCCACCGCGTCCGCC 120


12125R-2.IR_full       121 TCGTCGAGCCAGGAAGTACACGGGTCGGCGCAACCGCAACAGCATGCGCAGTCCAAACGA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12125R-2.in silico     121 TCGTCGAGCCAGGAAGTACACGGGTCGGCGCAACCGCAACAGCATGCGCAGTCCAAACGA 180


12125R-2.IR_full       181 TCTAATCTCGATAGCCGGATCTAAGGCCTCGGCCAGATCGGGGAGTCCTGTGGGCTCCAC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12125R-2.in silico     181 TCTAATCTCGATAGCCGGATCTAAGGCCTCGGCCAGATCGGGGAGTCCTGTGGGCTCCAC 240


12125R-2.IR_full       241 ACTGGCCTACTCGGATCGCCTGTCCATGGCGTCCGGCTCGATTGGCGTTGGTGTATTGGG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12125R-2.in silico     241 ACTGGCCTACTCGGATCGCCTGTCCATGGCGTCCGGCTCGATTGGCGTTGGTGTATTGGG 300


12125R-2.IR_full       301 CGTACAAAATGCCGGTCCTGGCAGCTCGGTAGTCACACAACTGACGGCCCAACAGTTGGG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12125R-2.in silico     301 CGTACAAAATGCCGGTCCTGGCAGCTCGGTAGTCACACAACTGACGGCCCAACAGTTGGG 360


12125R-2.IR_full       361 CATGATGGGCATGGAGGCACTGGACACAGTGATCAACTTCTGGGAGGATGCCCTGGCGGC 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12125R-2.in silico     361 CATGATGGGCATGGAGGCACTGGACACAGTGATCAACTTCTGGGAGGATGCCCTGGCGGC 420


12125R-2.IR_full       421 ACACTACTCGCCCGGCGGTTTGCCCGCCCTGTTGACCACGGCGGAGGACTCCGAGTTCTG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12125R-2.in silico     421 ACACTACTCGCCCGGCGGTTTGCCCGCCCTGTTGACCACGGCGGAGGACTCCGAGTTCTG 480


12125R-2.IR_full       481 TCGCGAGATCCAANAACCTGC 501
                           ||||||||||||| |||||||
12125R-2.in silico     481 TCGCGAGATCCAA-AACCTGC 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_132248.2  CG12125-RA (CG12125), mRNA 
0   NM_142616.1  CG5060-RA (CG5060), mRNA 
0   NM_057385.4  CG11121-RA (so), mRNA 
0   NM_166683.1  CG4859-RA, transcript variant A (Mmp1), mRNA 
0   NM_079128.2  CG4859-RB, transcript variant B (Mmp1), mRNA 
0   NM_166898.1  CG11491-RG, transcript variant G (br), mRNA 
0   NM_080020.3  CG11491-RE, transcript variant E (br), mRNA 
0   NM_170468.1  CG31029-RA (CG31029), mRNA 
0   NM_078559.2  CG18085-RA (sev), mRNA 
0   NM_142449.1  CG7131-RA, transcript variant A (CG7131), mRNA 
0   NM_170562.1  CG1815-RA, transcript variant A (CG1815), mRNA 
0   NM_143624.2  CG1815-RC, transcript variant C (CG1815), mRNA 
0   NM_170563.1  CG1815-RB, transcript variant B (CG1815), mRNA 
0   NM_206510.1  CG7131-RB, transcript variant B (CG7131), mRNA 
0   NM_169696.1  CG3992-RA, transcript variant A (srp), mRNA 
0   NM_169694.1  CG3992-RB, transcript variant B (srp), mRNA 
0   NM_137711.3  CG30389-RA, transcript variant A (CG30389), mRNA 
0   NM_137712.3  CG30389-RC, transcript variant C (CG30389), mRNA 
0   NM_166428.2  CG30389-RB, transcript variant B (CG30389), mRNA 
0   NM_169529.2  CG16901-RA, transcript variant A (sqd), mRNA 
0   NM_206481.1  CG16901-RD, transcript variant D (sqd), mRNA 
0   NM_143952.1  CG16901-RC, transcript variant C (sqd), mRNA 
0   NM_169528.1  CG16901-RB, transcript variant B (sqd), mRNA 
0   NM_206433.1  CG1427-RB, transcript variant B (CG1427), mRNA 
0   NM_141299.1  CG1427-RA, transcript variant A (CG1427), mRNA 
0   NM_168776.1  CG14073-RA, transcript variant A (CG14073), mRNA 
0   NM_136585.1  CG13745-RA (CG13745), mRNA 
0   NM_140803.1  CG14073-RB, transcript variant B (CG14073), mRNA 
0   NM_142326.2  CG16941-RA (CG16941), mRNA 
0   NM_206324.1  CG33267-RA (CG33267), mRNA 

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