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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 12116R-2 
 Symbol CG12116  Full Name CG12116 
 CG No CG12116  Old CG No CG12116 
 Synonyms 144701_at, CG12116 
 Accession No (Link to NCBI) NM_132253.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCGCACCTTTTTGGTGTTGAGC 
 Primer Seq. 3'
aatctagaggtaccAGCAGACCAGCATGGACCAAT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 CGCACCTTTT TGGTGTTGAG CGGCAGCTCA AATCCTTTGG GTCAATCCCT GGCGCTGGAG 
0061 TTCTGCCGTC GCCTGGCCAC TGGATCCCTT GCTTTGATCT TGGATGAGGA TCAGGAGCAG 
0121 CTTCGGGAGC TGGAGAATCA TCTCCGGAGC GAACTGAAGA CGGAGAACGT TAAGGTGACA 
0181 ATCGGAAAGT TGGACAAAGA TCACTCGAAT GGTGTGCAGC TAATGGAACA GGCATTGATG 
0241 GATAATTTCA TGGCGGATAA GGACAATCAA CGCTTCGAGC GTTCCATAAT CCTTCACAAC 
0301 GAGGGAAAGG CGGCCACGCA TATGCTCCTG GAACCCCAGA GCGACGACGA TTGGAAGGCC 
0361 TATGTCCAGC AGCAGCTCTA TGCTCCGGTG GCGCTCAATC AGACGTGGCT GCAATCGAAG 
0421 CACTTGGAGC GAGTGGAGAA GCTGGCGGTG AATGTGACCT CATCGCTGAT GGTACGTCCA 
0481 TTGGTCCATG CTGGTCTGCT  
 in silico PCR Fragment
0001 CGCACCTTTT TGGTGTTGAG CGGCAGCTCA AATCCTTTGG GTCAATCCCT GGCGCTGGAG 
0061 TTCTGCCGTC GCCTGGCCAC TGGATCCCTT GCTTTGATCT TGGATGAGGA TCAGGAGCAG 
0121 CTTCGGGAGC TGGAGAATCA TCTCCGGAGC GAACTGAAGA CGGAGAACGT TAAGGTGACA 
0181 ATCGGAAAGT TGGACAAAGA TCACTCGAAT GGTGTGCAGC TAATGGAACA GGCATTGATG 
0241 GATAATTTCA TGGCGGATAA GGACAATCAA CGCTTCGAGC GTTCCATAAT CCTTCACAAC 
0301 GAGGGAAAGG CGGCCACGCA TATGCTCCTG GAACCCCAGA GCGACGACGA TTGGAAGGCC 
0361 TATGTCCAGC AGCAGCTCTA TGCTCCGGTG GCGCTCAATC AGACGTGGCT GCAATCGAAG 
0421 CACTTGGAGC GAGTGGAGAA GCTGGCGGTG AATGTGACCT CATCGCTGAT GGTACGTCCA 
0481 TTGGTCCATG CTGGTCTGCT  
 Assemble Data

12116R-2.IR_full       1   CGCACCTTTTTGGTGTTGAGCGGCAGCTCAAATCCTTTGGGTCAATCCCTGGCGCTGGAG 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12116R-2.in silico     1   CGCACCTTTTTGGTGTTGAGCGGCAGCTCAAATCCTTTGGGTCAATCCCTGGCGCTGGAG 60


12116R-2.IR_full       61  TTCTGCCGTCGCCTGGCCACTGGATCCCTTGCTTTGATCTTGGATGAGGATCAGGAGCAG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12116R-2.in silico     61  TTCTGCCGTCGCCTGGCCACTGGATCCCTTGCTTTGATCTTGGATGAGGATCAGGAGCAG 120


12116R-2.IR_full       121 CTTCGGGAGCTGGAGAATCATCTCCGGAGCGAACTGAAGACGGAGAACGTTAAGGTGACA 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12116R-2.in silico     121 CTTCGGGAGCTGGAGAATCATCTCCGGAGCGAACTGAAGACGGAGAACGTTAAGGTGACA 180


12116R-2.IR_full       181 ATCGGAAAGTTGGACAAAGATCACTCGAATGGTGTGCAGCTAATGGAACAGGCATTGATG 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12116R-2.in silico     181 ATCGGAAAGTTGGACAAAGATCACTCGAATGGTGTGCAGCTAATGGAACAGGCATTGATG 240


12116R-2.IR_full       241 GATAATTTCATGGCGGATAAGGACAATCAACGCTTCGAGCGTTCCATAATCCTTCACAAC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12116R-2.in silico     241 GATAATTTCATGGCGGATAAGGACAATCAACGCTTCGAGCGTTCCATAATCCTTCACAAC 300


12116R-2.IR_full       301 GAGGGAAAGGCGGCCACGCATATGCTCCTGGAACCCCAGAGCGACGACGATTGGAAGGCC 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12116R-2.in silico     301 GAGGGAAAGGCGGCCACGCATATGCTCCTGGAACCCCAGAGCGACGACGATTGGAAGGCC 360


12116R-2.IR_full       361 TATGTCCAGCAGCAGCTCTATGCTCCGGTGGCGCTCAATCAGACGTGGCTGCAATCGAAG 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12116R-2.in silico     361 TATGTCCAGCAGCAGCTCTATGCTCCGGTGGCGCTCAATCAGACGTGGCTGCAATCGAAG 420


12116R-2.IR_full       421 CACTTGGAGCGAGTGGAGAAGCTGGCGGTGAATGTGACCTCATCGCTGATGGTACGTCCA 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12116R-2.in silico     421 CACTTGGAGCGAGTGGAGAAGCTGGCGGTGAATGTGACCTCATCGCTGATGGTACGTCCA 480


12116R-2.IR_full       481 TTGGTCCATGCTGGTCTGCT 500
                           ||||||||||||||||||||
12116R-2.in silico     481 TTGGTCCATGCTGGTCTGCT 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_132253.1  CG12116-RA (CG12116), mRNA 
0.41   11  NM_080337.2  CG6899-RA, transcript variant A (Ptp4E), mRNA 
0   NM_144451.2  CG16741-RA (CG16741), mRNA 
0   NM_169693.1  CG4261-RA (Hel89B), mRNA 
0   NM_206199.1  CG33227-RB (CG33227), mRNA 
0   NM_143219.1  CG5432-RA (CG5432), mRNA 
0   NM_139536.1  CG11505-RB, transcript variant B (CG11505), mRNA 
0   NM_168007.1  CG11505-RA, transcript variant A (CG11505), mRNA 
0   NM_057646.2  CG10844-RD, transcript variant D (Rya-r44F), mRNA 
0   NM_057645.2  CG10844-RC, transcript variant C (Rya-r44F), mRNA 
0   NM_057644.2  CG10844-RB, transcript variant B (Rya-r44F), mRNA 
0   NM_057643.2  CG10844-RA, transcript variant A (Rya-r44F), mRNA 
0   NM_134496.2  CG14215-RA (CG14215), mRNA 
0   NM_139416.1  CG13937-RA, transcript variant A (CG13937), mRNA 
0   NM_167924.1  CG13937-RC, transcript variant C (CG13937), mRNA 
0   NM_167923.1  CG13937-RB, transcript variant B (CG13937), mRNA 
0   NM_137362.3  CG4798-RA, transcript variant A (l(2)k01209), mRNA 
0   NM_166225.2  CG4798-RC, transcript variant C (l(2)k01209), mRNA 
0   NM_166226.2  CG4798-RD, transcript variant D (l(2)k01209), mRNA 
0   NM_166224.2  CG4798-RB, transcript variant B (l(2)k01209), mRNA 
0   11  NM_135753.2  CG9934-RA (CG9934), mRNA 
0   NM_079170.2  CG1066-RB, transcript variant B (Shab), mRNA 
0   NM_001043115.1  CG1066-RC, transcript variant C (Shab), mRNA 
0   NM_167967.1  CG1066-RA, transcript variant A (Shab), mRNA 
0   NM_143245.2  CG14247-RA (CG14247), mRNA 
0   NM_143015.2  CG13625-RA (CG13625), mRNA 
0   NM_130729.2  CG2938-RB (CG2938), mRNA 
0   15  NM_132841.1  CG8260-RA, transcript variant A (CG8260), mRNA 
0   15  NM_206723.1  CG8260-RB, transcript variant B (CG8260), mRNA 
0   NM_141666.2  CG9492-RA (CG9492), mRNA 

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