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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 12114R-1 
 Symbol spn-F  Full Name spn-F 
 CG No CG12114  Old CG No CG12114 
 Synonyms spn-F, CG12114, 1130/03, l(3)S113003b, Spn-F 
 Accession No (Link to NCBI) NM_143601.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Cho Y, Lai CM, Lin KY, Hsu HJ.
A Targeted RNAi Screen Reveals Drosophila Female-Sterile Genes That Control the Size of Germline Stem Cell Niche During Development.
G3 (Bethesda) (2018) 8(7) 2345-2354 [ PubMed ID = 29764959 ] [ RRC reference ]

Fairchild MJ, Islam F, Tanentzapf G.
Identification of genetic networks that act in the somatic cells of the testis to mediate the developmental program of spermatogenesis.
PLoS Genet (2017) 13(9) e1007026 [ PubMed ID = 28957323 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgAGCTAAGGGAGGCCTCCAGCA 
 Primer Seq. 3'
aatctagaggtaccCTTCATGGCCTCTCGCCTCAG 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 AGCTAAGGGA GGCCTCCAGC AGGTCGGAAG GTGCTCCAAG GGCAAACGAA ATCGGGGTCA 
0061 CTGGGGACGT CCTCTCTCTG AAAGCACAGG TCTCTGAGCT GCAGCGCCAA AAAGAGCAGC 
0121 TGGAGGAGCA CATTGGCATG GTATCCAACG AGAACAGACG GCTCTGGTCC CGCCTATCGC 
0181 AGATCTCCAA GGATCAGCAG CTGAACGCAC TGCCCAGCTC AACAGACTCG CGAGCCCAGC 
0241 AAAACCAGAA CCTGGTGCGC TCCAAGACCT TTACGCAGCA CTCCCCCAAT CCTCACCTTC 
0301 GCCAAAAGAT GCTCTCCGAC GGCATTAAGG ATCTCAGTCT GGAGGAAATA GCCCTGGATG 
0361 ACTTCGGTGC CAGCAGTGAG GAACTAGGTT ACCCCTACAA CCTGCAAAAG GTGGAGGAAA 
0421 CCACTAGTGA ACCAGATGCC AATGTGGATG CCAAAAGATG TTTGGATGGA CTGCAGGAGC 
0481 TGAGGCGAGA GGCCATGAAG  
 in silico PCR Fragment
0001 AGCTAAGGGA GGCCTCCAGC AGGTCGGAAG GTGCTCCAAG GGCAAACGAA ATCGGGGTCA 
0061 CTGGGGACGT CCTCTCTCTG AAAGCACAGG TCTCTGAGCT GCAGCGCCAA AAGGAGCAGC 
0121 TGGAGGAGCA CATTGGCATG GTATCCAACG AGAACAGACG GCTCTGGTCC CGCCTATCGC 
0181 AGATCTCCAA GGATCAGCAG CTGAACGCAC TGCCCAGCTC AACAGACTCG CGAGCCCAGC 
0241 AAAACCAGAA CCTGGTGCGC TCCAAGACCT TTACGCAGCA CTCCCCCAAT CCTCACCTTC 
0301 GCCAAAAGAT GCTCTCCGAC GGCATTAAGG ATCTCAGTCT GGAGGAAATA GCCCTGGATG 
0361 ACTTCGGTGC CAGCAGTGAG GAACTAGGTT ACCCCTACAA CCTGCAAAAG GTGGAGGAAA 
0421 CCACTAGTGA ACCAGATGCC AATGTGGATG CCAAAAGATG TTTGGATGGA CTGCAGGAGC 
0481 TGAGGCGAGA GGCCATGAAG  
 Assemble Data

12114R-1.IR_full       1   AGCTAAGGGAGGCCTCCAGCAGGTCGGAAGGTGCTCCAAGGGCAAACGAAATCGGGGTCA 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12114R-1.in silico     1   AGCTAAGGGAGGCCTCCAGCAGGTCGGAAGGTGCTCCAAGGGCAAACGAAATCGGGGTCA 60


12114R-1.IR_full       61  CTGGGGACGTCCTCTCTCTGAAAGCACAGGTCTCTGAGCTGCAGCGCCAAAAAGAGCAGC 120
                           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
12114R-1.in silico     61  CTGGGGACGTCCTCTCTCTGAAAGCACAGGTCTCTGAGCTGCAGCGCCAAAAGGAGCAGC 120


12114R-1.IR_full       121 TGGAGGAGCACATTGGCATGGTATCCAACGAGAACAGACGGCTCTGGTCCCGCCTATCGC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12114R-1.in silico     121 TGGAGGAGCACATTGGCATGGTATCCAACGAGAACAGACGGCTCTGGTCCCGCCTATCGC 180


12114R-1.IR_full       181 AGATCTCCAAGGATCAGCAGCTGAACGCACTGCCCAGCTCAACAGACTCGCGAGCCCAGC 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12114R-1.in silico     181 AGATCTCCAAGGATCAGCAGCTGAACGCACTGCCCAGCTCAACAGACTCGCGAGCCCAGC 240


12114R-1.IR_full       241 AAAACCAGAACCTGGTGCGCTCCAAGACCTTTACGCAGCACTCCCCCAATCCTCACCTTC 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12114R-1.in silico     241 AAAACCAGAACCTGGTGCGCTCCAAGACCTTTACGCAGCACTCCCCCAATCCTCACCTTC 300


12114R-1.IR_full       301 GCCAAAAGATGCTCTCCGACGGCATTAAGGATCTCAGTCTGGAGGAAATAGCCCTGGATG 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12114R-1.in silico     301 GCCAAAAGATGCTCTCCGACGGCATTAAGGATCTCAGTCTGGAGGAAATAGCCCTGGATG 360


12114R-1.IR_full       361 ACTTCGGTGCCAGCAGTGAGGAACTAGGTTACCCCTACAACCTGCAAAAGGTGGAGGAAA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12114R-1.in silico     361 ACTTCGGTGCCAGCAGTGAGGAACTAGGTTACCCCTACAACCTGCAAAAGGTGGAGGAAA 420


12114R-1.IR_full       421 CCACTAGTGAACCAGATGCCAATGTGGATGCCAAAAGATGTTTGGATGGACTGCAGGAGC 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
12114R-1.in silico     421 CCACTAGTGAACCAGATGCCAATGTGGATGCCAAAAGATGTTTGGATGGACTGCAGGAGC 480


12114R-1.IR_full       481 TGAGGCGAGAGGCCATGAAG 500
                           ||||||||||||||||||||
12114R-1.in silico     481 TGAGGCGAGAGGCCATGAAG 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_143601.2  CG12114-RA (CG12114), mRNA 
0.41   NM_135369.1  CG14273-RA (CG14273), mRNA 
0.41   NM_167087.1  CG3203-RA, transcript variant A (RpL17), mRNA 
0.41   NM_132118.2  CG3203-RD, transcript variant D (RpL17), mRNA 
0.41   NM_167089.1  CG3203-RC, transcript variant C (RpL17), mRNA 
0.41   NM_167088.1  CG3203-RB, transcript variant B (RpL17), mRNA 
0.2   NM_133138.1  CG7884-RA (CG7884), mRNA 
0.2   NM_134833.4  CG9866-RA, transcript variant A (CG9866), mRNA 
0.2   NM_164481.1  CG9866-RB, transcript variant B (CG9866), mRNA 
0.2   NM_001042822.1  CG34120-RC, transcript variant C (CG34120), mRNA 
0   NM_134680.1  CG13691-RA (BBS8), mRNA 
0   NM_134804.3  CG7261-RA (CG7261), mRNA 
0   NM_142172.2  CG6654-RA (CG6654), mRNA 
0   NM_166535.1  CG4444-RA (px), mRNA 
0   NM_140908.1  CG7570-RA (hale), mRNA 
0   NM_140350.2  CG11009-RA (CG11009), mRNA 
0   NM_001043272.1  CG17299-RK, transcript variant K (SNF4Agamma), mRNA 
0   NM_001043273.1  CG17299-RJ, transcript variant J (SNF4Agamma), mRNA 
0   NM_169949.1  CG17299-RE, transcript variant E (SNF4Agamma), mRNA 
0   NM_169948.1  CG17299-RC, transcript variant C (SNF4Agamma), mRNA 
0   NM_078514.2  CG9653-RA (brk), mRNA 
0   NM_169946.1  CG17299-RA, transcript variant A (SNF4Agamma), mRNA 
0   NM_080509.2  CG17299-RB, transcript variant B (SNF4Agamma), mRNA 
0   NM_169947.1  CG17299-RF, transcript variant F (SNF4Agamma), mRNA 
0   NM_001043271.1  CG17299-RL, transcript variant L (SNF4Agamma), mRNA 
0   NM_169950.1  CG17299-RG, transcript variant G (SNF4Agamma), mRNA 
0   NM_001043274.1  CG17299-RI, transcript variant I (SNF4Agamma), mRNA 
0   NM_139783.1  CG10226-RA (CG10226), mRNA 
0   NM_169458.1  CG11502-RA, transcript variant A (svp), mRNA 
0   NM_142482.2  CG7700-RA (Gos28), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
 
DC
 
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
DC
 
DM
 
VM
 
VB
 
Dcompartment   Penetrance
     

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