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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
11926R-1 |
| Symbol |
CG11926 |
Full Name |
CG11926 |
| CG No |
CG11926 |
Old CG No |
CG11926 |
| Synonyms |
CG11926 |
| Accession No (Link to NCBI) |
NM_135024.1 |
| Inserted Chr. |
lll |
| Insertional Mutation |
lethal |
| Phenotype induced by Act5C-GAL4 at 28 degrees |
male lethal |
| Map Viewer |
|
Reference
[Please submit your publication]
|
Boda A, Varga LP, Nagy A, Szenci G, Csizmadia T, Lőrincz P, Juhász G.
Rab26 controls secretory granule maturation and breakdown in Drosophila.
Cell Mol Life Sci (2023) 80(1) 24
[
PubMed ID = 36600084
]
[
RRC reference
]
Álvarez-Fernández C, Tamirisa S, Prada F, Chernomoretz A, Podhajcer O, Blanco E, Martín-Blanco E.
Identification and functional analysis of healing regulators in Drosophila.
PLoS Genet (2015) 11(2) e1004965
[
PubMed ID = 25647511
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
|
| Comment |
|
| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgCCGGAGTCCCCAAATCTCTAT |
| Primer Seq. 3' |
aatctagaggtaccTGCACACTCATGTTGCTCCTG |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
0001 CCGGAGTNCC CCAAATCTCT ATCAAGAGGC GGATCCCGAC CAGGAGGCCG AGCAACAAAA
0061 CCATAGTATT ATCTCTGAGC TAAGAGATGG CCTGGGCACC ATGCGAGATA ACAGTGCCCT
0121 CAGTCCGGAG CCGGGGCAGG AGAACAAGGG ACTGGCTGCC TCTGTGGAGT CTCTGGCATT
0181 GAGCACCTCG ACCAGCGCCA AAACAGAGGA CTCCATTGGC GGGGGACTGG AGGAGGAATA
0241 CGATTACCAG CACGACAGTC TGTGGCAGGG CCAAAAGAAA CACATCTTCA TACTAAGCGA
0301 GGCGGGAAAG CCAATCTTCT CGCTACACGG CAATGAGGAT AAAACTGGCC ACGCTTTTCG
0361 GTGTCATTCA GGCACTGGTA AGCTTCGTCC AAATGGGCCA GGATGCTATT ACCTCCATTC
0421 ATGCGGGCGG CATTAAATTC GCTTTCATGC AACGCAGCTC GCTCATCCTG GTGGCTGCCA
0481 GCAGGAGCAA CATGAGTGTG CA |
| in silico PCR Fragment |
0001 CCGGAGT-CC CCAAATCTCT ATCAAGAGGC GGATCCCGAC CAGGAGGCCG AGCAACAAAA
0061 CCATAGTATT ATCTCTGAGC TAAGAGATGG CCTGGGCACC ATGCGAGATA ACAGTGCCCT
0121 CAGTCCGGAG CCGGGGCAGG AGAACAAGGG ACTGGCTGCC TCTGTGGAGT CTCTGGCATT
0181 GAGCACCTCG ACCAGCGCCA AAACAGAGGA CTCCATTGGC GGGGGACTGG AGGAGGAATA
0241 CGATTACCAG CACGACAGTC TGTGGCAGGG CCAAAAGAAA CACATCTTCA TACTAAGCGA
0301 GGCGGGAAAG CCAATCTTCT CGCTACACGG CAATGAGGAT -AAACTGGCC ACGCTTTTCG
0361 GTGTCATTCA GGCACTGGTA AGCTTCGTCC AAATGGGCCA GGATGCTATT ACCTCCATTC
0421 ATGCGGGCGG CATTAAGTTC GCTTTCATGC AACGCAGCTC GCTCATCCTG GTGGCTGCCA
0481 GCAGGAGCAA CATGAGTGTG CA |
| Assemble Data |
11926R-1.IR_full 1 CCGGAGTNCCCCAAATCTCTATCAAGAGGCGGATCCCGACCAGGAGGCCGAGCAACAAAA 60
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
11926R-1.in silico 1 CCGGAGT-CCCCAAATCTCTATCAAGAGGCGGATCCCGACCAGGAGGCCGAGCAACAAAA 60
11926R-1.IR_full 61 CCATAGTATTATCTCTGAGCTAAGAGATGGCCTGGGCACCATGCGAGATAACAGTGCCCT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11926R-1.in silico 61 CCATAGTATTATCTCTGAGCTAAGAGATGGCCTGGGCACCATGCGAGATAACAGTGCCCT 120
11926R-1.IR_full 121 CAGTCCGGAGCCGGGGCAGGAGAACAAGGGACTGGCTGCCTCTGTGGAGTCTCTGGCATT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11926R-1.in silico 121 CAGTCCGGAGCCGGGGCAGGAGAACAAGGGACTGGCTGCCTCTGTGGAGTCTCTGGCATT 180
11926R-1.IR_full 181 GAGCACCTCGACCAGCGCCAAAACAGAGGACTCCATTGGCGGGGGACTGGAGGAGGAATA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11926R-1.in silico 181 GAGCACCTCGACCAGCGCCAAAACAGAGGACTCCATTGGCGGGGGACTGGAGGAGGAATA 240
11926R-1.IR_full 241 CGATTACCAGCACGACAGTCTGTGGCAGGGCCAAAAGAAACACATCTTCATACTAAGCGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11926R-1.in silico 241 CGATTACCAGCACGACAGTCTGTGGCAGGGCCAAAAGAAACACATCTTCATACTAAGCGA 300
11926R-1.IR_full 301 GGCGGGAAAGCCAATCTTCTCGCTACACGGCAATGAGGATAAAACTGGCCACGCTTTTCG 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
11926R-1.in silico 301 GGCGGGAAAGCCAATCTTCTCGCTACACGGCAATGAGGAT-AAACTGGCCACGCTTTTCG 360
11926R-1.IR_full 361 GTGTCATTCAGGCACTGGTAAGCTTCGTCCAAATGGGCCAGGATGCTATTACCTCCATTC 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11926R-1.in silico 361 GTGTCATTCAGGCACTGGTAAGCTTCGTCCAAATGGGCCAGGATGCTATTACCTCCATTC 420
11926R-1.IR_full 421 ATGCGGGCGGCATTAAATTCGCTTTCATGCAACGCAGCTCGCTCATCCTGGTGGCTGCCA 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
11926R-1.in silico 421 ATGCGGGCGGCATTAAGTTCGCTTTCATGCAACGCAGCTCGCTCATCCTGGTGGCTGCCA 480
11926R-1.IR_full 481 GCAGGAGCAACATGAGTGTGCA 502
||||||||||||||||||||||
11926R-1.in silico 481 GCAGGAGCAACATGAGTGTGCA 502
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
5 |
NM_135024.1 |
CG11926-RA (CG11926), mRNA |
| 0 |
0 |
3 |
2 |
5 |
NM_168288.1 |
CG32029-RA (CG32029), mRNA |
| 0 |
0 |
3 |
2 |
3 |
NM_137641.2 |
CG13423-RA (CG13423), mRNA |
| 0 |
0 |
2 |
6 |
2 |
NM_058047.3 |
CG7961-RA, transcript variant A (alphaCop), mRNA |
| 0 |
0 |
2 |
6 |
2 |
NM_167908.1 |
CG7961-RB, transcript variant B (alphaCop), mRNA |
| 0 |
0 |
2 |
4 |
6 |
NM_166057.1 |
CG8787-RA, transcript variant A (Asx), mRNA |
| 0 |
0 |
2 |
4 |
6 |
NM_001014527.1 |
CG8787-RB, transcript variant B (Asx), mRNA |
| 0 |
0 |
2 |
3 |
2 |
NM_132420.2 |
CG32676-RA (CG32676), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_142442.1 |
CG12320-RA (CG12320), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_131942.1 |
CG3527-RA (CG3527), mRNA |
| 0 |
0 |
1 |
6 |
6 |
NM_170220.1 |
CG31099-RA (CG31099), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_132587.2 |
CG11085-RA (CG11085), mRNA |
| 0 |
0 |
1 |
5 |
2 |
NM_135245.1 |
CG10399-RA (CG10399), mRNA |
| 0 |
0 |
1 |
3 |
5 |
NM_206356.2 |
CG33261-RB, transcript variant B (Trl), mRNA |
| 0 |
0 |
1 |
3 |
4 |
NM_001038926.1 |
CG33261-RI, transcript variant I (Trl), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_137252.2 |
CG8445-RA, transcript variant A (CG8445), mRNA |
| 0 |
0 |
1 |
3 |
3 |
NM_176194.1 |
CG8445-RB, transcript variant B (CG8445), mRNA |
| 0 |
0 |
1 |
2 |
7 |
NM_168642.2 |
CG13076-RB, transcript variant B (Notum), mRNA |
| 0 |
0 |
1 |
2 |
7 |
NM_168643.2 |
CG13076-RA, transcript variant A (Notum), mRNA |
| 0 |
0 |
1 |
2 |
6 |
NM_135068.2 |
CG10833-RA (Cyp28d1), mRNA |
| 0 |
0 |
1 |
2 |
3 |
NM_137971.2 |
CG5428-RA (CG5428), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_136293.2 |
CG1832-RA, transcript variant A (CG1832), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_001014498.1 |
CG1832-RB, transcript variant B (CG1832), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_165119.1 |
CG31780-RB (CG31780), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_136642.1 |
CG13955-RA (CG13955), mRNA |
| 0 |
0 |
1 |
2 |
2 |
NM_135919.1 |
CG18477-RA (CG18477), mRNA |
| 0 |
0 |
0 |
8 |
10 |
NM_168687.1 |
CG9674-RC, transcript variant C (CG9674), mRNA |
| 0 |
0 |
0 |
8 |
10 |
NM_168686.1 |
CG9674-RB, transcript variant B (CG9674), mRNA |
| 0 |
0 |
0 |
8 |
10 |
NM_140665.1 |
CG9674-RA, transcript variant A (CG9674), mRNA |
| 0 |
0 |
0 |
8 |
10 |
NM_176339.1 |
CG9674-RD, transcript variant D (CG9674), mRNA |
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