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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 11888R-1 
 Symbol Rpn2  Full Name Rpn2 
 CG No CG11888  Old CG No CG11888 
 Synonyms p110, dRpn2, CG11888, Rpn2 
 Accession No (Link to NCBI)  
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Ohhara Y, Nakamura A, Kato Y, Yamakawa-Kobayashi K.
Chaperonin TRiC/CCT supports mitotic exit and entry into endocycle in Drosophila.
PLoS Genet (2019) 15(4) e1008121 [ PubMed ID = 31034473 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgTGTTCGCCCTCAAAAAGCTGG 
 Primer Seq. 3'
aatctagaggtaccGATGAGGGACATGGTCACGTT 
 Predicted Fragment Size
500 
 IR fragment full Seq
 
 in silico PCR Fragment
 
 Assemble Data

11888R-1.IR full       1   TGTTCGCCCTCAAAAAGCTGGACAACATCGTGGATGAGTTCTGGCCGGAGATCTCGGAGT 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11888R-1.in silico     1   TGTTCGCCCTCAAAAAGCTGGACAACATCGTGGATGAGTTCTGGCCGGAGATCTCGGAGT 60


11888R-1.IR full       61  CCATCGAGAAGATCGAGATGCTGCACGAGGATCGCAGCTTCCCCGAAAACAAGCTAGCTG 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11888R-1.in silico     61  CCATCGAGAAGATCGAGATGCTGCACGAGGATCGCAGCTTCCCCGAAAACAAGCTAGCTG 120


11888R-1.IR full       121 GCATGGTGGCCTCCAAGGTGTTCTATCACCTGGGCTCCTTCGAGGACGCTCTGACGTACG 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11888R-1.in silico     121 GCATGGTGGCCTCCAAGGTGTTCTATCACCTGGGCTCCTTCGAGGACGCTCTGACGTACG 180


11888R-1.IR full       181 CCCTGGGCGCTGGTGATCTGTTCGACGTGAATGCCCGCAATGAGTACACGGAGACCATCA 240
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11888R-1.in silico     181 CCCTGGGCGCTGGTGATCTGTTCGACGTGAATGCCCGCAATGAGTACACGGAGACCATCA 240


11888R-1.IR full       241 TTGCCAAGTGCATCGACTTCTACATTGCCCAGCGGGTGGAGTTCATCGAGAACCCTAAGG 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11888R-1.in silico     241 TTGCCAAGTGCATCGACTTCTACATTGCCCAGCGGGTGGAGTTCATCGAGAACCCTAAGG 300


11888R-1.IR full       301 AGGCGAGTGTCGTGGACGAGCGGCTGGAGGGCATTGTGAACAGGATGATTCAGCGCTGTC 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11888R-1.in silico     301 AGGCGAGTGTCGTGGACGAGCGGCTGGAGGGCATTGTGAACAGGATGATTCAGCGCTGTC 360


11888R-1.IR full       361 TGGACGACAACCAGTTCCGCCAGGCTCTGGGCATCGCTCTGGAGACCCGTCGCATGGACA 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11888R-1.in silico     361 TGGACGACAACCAGTTCCGCCAGGCTCTGGGCATCGCTCTGGAGACCCGTCGCATGGACA 420


11888R-1.IR full       421 CCTTCAAGGACGCTATCATGAAGTCGGACGATGTGCGTGGCATGNTGGCCTACGCCTACA 480
                           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
11888R-1.in silico     421 CCTTCAAGGACGCTATCATGAAGTCGGACGATGTGCGTGGCATGCTGGCCTACGCCTACA 480


11888R-1.IR full       481 ACGTGACCATGTCCCTCATC 500
                           ||||||||||||||||||||
11888R-1.in silico     481 ACGTGACCATGTCCCTCATC 500

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
 

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