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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 11581R-3 
 Symbol CG11581  Full Name CG11581 
 CG No CG11581  Old CG No CG11581 
 Synonyms CG11581 
 Accession No (Link to NCBI) NM_132712.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees viable 
 Map Viewer
 Reference
[Please submit your publication]
Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment balanced with SM6a, Cy 
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgCAGGTGGGTTTCCCCCACAAG 
 Primer Seq. 3'
aatctagaggtaccCATAGCCGCCATTGGATGCGT 
 Predicted Fragment Size
498 
 IR fragment full Seq
0001 CAGGTGGGTT TCCCCCACAA GGANGCTGGC TTCCAGCCAC AAGGCATCCC TGGCAATGGA 
0061 TTCCCAACGC AAGGAGCTCC TTTCTCACCA CAGCAGGGAG TGTTCCCATC CCAGGGAGGT 
0121 GCCTTCGGGC CACAGGGAAT ACCGGGCAAT GGTTTCCTAG GAGGTAACTT CCCGCCACAG 
0181 GGAGGGCCCT TCCCAGGATC CGCATATCCA CCGGAGTTCT TGACAAACCA GGGACTTCCC 
0241 CTCACAAATC CCCAGGGTCC CTTCCAAGGA CCCAGTCCAG CAGGATTCAA TGTGCCCGCA 
0301 GGATTCGGCG GACCTGTGCC CGGCCAGAAT CCCTACCAAC AATTTGGACC CGGTTTCGGA 
0361 GNGACCCGCT CCGCCGGGCT ACTCCGATGA GCCGGCGAAG GAGCAACCAA AGGACAGTGA 
0421 GAGGACAGTA GTGGCACCAC CATCGGCCGA CGATCCCAAG AGTGTGGCGG ATACGGTTTA 
0481 CGCATCCAAT GGCGGCTATG  
 in silico PCR Fragment
0001 CAGGTGGGTT TCCCCCACAA GGA-GCTGGC TTCCAGCCAC AAGGCATCCC TGGCAATGGA 
0061 TTCCCAACGC AAGGAGCTCC CTTCTCACCA CAGCAGGGAG TGTTCCCATC ACAAGGAGGT 
0121 GCCTTCGGGC CACAGGGAAT ACCGGGCAAT GGTTTCCTAG GAGGTAACTT CCCGCCACAG 
0181 GGAGGGCCCT TCCCAGGATC CGCATATCCA CCGGAGTTCT TGACAAACCA GGGACTTCCC 
0241 CTCACAAATC CCCAGGGTCC CTTCCAAGGA CCCAGTCCAG CAGGATTCAA TGTGCCCGCA 
0301 GGATTCGGCG GACCTGTGCC CGGCCAGAAT CCCTACCAAC AATTTGGACC CGGTTTCGGA 
0361 G-GACCCGCT CCGCCGGGCT ACTCCGATGA GCCGGCGAAG GAGCAACCAA AGGACAGTGA 
0421 GAGGACAGTA GTGGCACCAC CATCGGCCGA CGATCCCAAG AGTGTGGCGG ATACGGTTTA 
0481 CGCATCCAAT GGCGGCTATG  
 Assemble Data

1405R-3.IR_full       1   CGTGGAATCGGCGGTGAAGCAAGCGTTGCAGGTTCACCTCACGCCCAACGAGGGCGACAT 60
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1405R-3.in silico     1   CGTGGAATCGGCGGTGAAGCAAGCGTTGCAGGTTCACCTCACGCCCAACGAGGGCGACAT 60


1405R-3.IR_full       61  GCTCATCTTCATGCCCGGCCAGGAGGACATCGAGGTGACGTGCGAGGTGCTCGAGGAGCG 120
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1405R-3.in silico     61  GCTCATCTTCATGCCCGGCCAGGAGGACATCGAGGTGACGTGCGAGGTGCTCGAGGAGCG 120


1405R-3.IR_full       121 ACTGGCGGTAGATCGATAATGCGCCGGCACTAAGCATACTGCCCATCTATTCGCAATTGC 180
                          |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
1405R-3.in silico     121 ACTGGCGG-AGATCGATAATGCGCCGGCACTAAGCATACTGCCCATCTATTCGCAATTGC 180


1405R-3.IR_full       181 CGTCCGATTTGCAAGCAAAGATCTTTCAGAAATCCAGCGATGGATTGCGCAAGTGTGTGG 240
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1405R-3.in silico     181 CGTCCGATTTGCAAGCAAAGATCTTTCAGAAATCCAGCGATGGATTGCGCAAGTGTGTGG 240


1405R-3.IR_full       241 TGGCCACGAACATAGCGGAAACATCGCTAACCGTCGACGGCATCATCTACGTTATCGATT 300
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1405R-3.in silico     241 TGGCCACGAACATAGCGGAAACATCGCTAACCGTCGACGGCATCATCTACGTTATCGATT 300


1405R-3.IR_full       301 CCGGCTACTGCAAACTGAAGGTCTACAATCCGCGCATCGGCATGGACGCCCTGCAGATCT 360
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1405R-3.in silico     301 CCGGCTACTGCAAACTGAAGGTCTACAATCCGCGCATCGGCATGGACGCCCTGCAGATCT 360


1405R-3.IR_full       361 ATCCCATATCGCAGGCGAATGCCAATCAGCGCAGCGGTCGTGCCGGACGCACAGGACCCG 420
                          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
1405R-3.in silico     361 ATCCCATATCGCAGGCGAATGCCAATCAGCGCAGCGGTCGTGCCGGACGCACAGGACCCG 420


1405R-3.IR_full       421 GTCAGNCGTACCGCTTGTATACGCAGCGCCAGTACAAGGACGAGCTGTTGGCCCTAACCG 480
                          ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
1405R-3.in silico     421 GTCAGGCGTACCGCTTGTATACGCAGCGCCAGTACAAGGACGAGCTGTTGGCCCTAACCG 480


1405R-3.IR_full       481 TGCCCGAGATTCAGCGGACCA 501
                          |||||||||||||||||||||
1405R-3.in silico     481 TGCCCGAGATTCAGCGGACCA 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
 

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