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NIG-RNAi Strains Detail |
Request : Click the "Order" button to request for this stock |
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
Stock ID |
11474R-1 |
Symbol |
CG11474 |
Full Name |
CG11474 |
CG No |
CG11474 |
Old CG No |
CG11474 |
Synonyms |
CG11474 |
Accession No (Link to NCBI) |
NM_137790.1 |
Inserted Chr. |
lll |
Insertional Mutation |
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Phenotype induced by Act5C-GAL4 at 28 degrees |
lethal |
Map Viewer |
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Reference
[Please submit your publication]
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Fan W, Lam SM, Xin J, Yang X, Liu Z, Liu Y, Wang Y, Shui G, Huang X. Drosophila TRF2 and TAF9 regulate lipid droplet size and phospholipid fatty acid composition. PLoS Genet (2017) 13(3) e1006664
[
PubMed ID = 28273089
]
[
RRC reference
]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K. A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction. PLoS One (2015) 10(10) e0140976
[
PubMed ID = 26488612
]
[
RRC reference
]
Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T. RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc. Gene Regul Syst Bio (2009) 3 11-20
[
PubMed ID = 19838331
]
[
RRC reference
]
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Comment |
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Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
Primer Seq. 5' |
aaggcctacatggccggaccgGCAGAGCTTTGCCTACTACAC |
Primer Seq. 3' |
aatctagaggtaccCGCATCGGTTGCCCCACAAAT |
Predicted Fragment Size |
500 |
IR fragment full Seq |
0001 GCAGANNTTT GCCTACTACA CCTTCCGTGT GCGTCTGCCC TCGACCTTGG CCACCATCGC
0061 GGATTCCCTA GTCAAGGACA AGGACGTCCT CCTGGCCACA TATGGCGCGG CAGCGGAAGC
0121 CGANTATTGA ACAAACTACA AAGGAGGTTA GACAGCTGCG GGATGACATC CTGAGCAACG
0181 GTCCTTTACT GCCCTTTGGT GAAAATGATT CCGATTCTCA AGTGTGGAAT GCATTCCTGG
0241 AAAAACTGCC CAAGGAGAAG AGAACCTACT TTTCCGTCTN GCTGGCTGTA CGCCGAGTGT
0301 TATATGTACC GCAAAATCTC ATCTATTTTC CGGGCCACAG CCCATCTGGC CGCCTACGAC
0361 TACTTCAGCC AGCAGAAACA GACGGCGACC AAACTGAGCG TGNANGCCAT GCTGGCGGTG
0421 GCCaANNCTN CGCGGCACAA TGAACGAAAC TCGGACACCT TCCGCCAGTT GATCAAACTC
0481 AATTTGTGGG GCAACCGATG CG |
in silico PCR Fragment |
0001 GCAGAGCTTT GCCTACTACA CCTTCCGTGT GCGTCTGCCT TCGACCTTGG CCACCATCGC
0061 GGATTCCCTA GTCAAGGACA AGGACGTCCT CCTGGCCACA TATGGCGCGG CAGCGGAAGC
0121 CGA-TATTGA ACAAACTACA AAGGAGGTTA GACAGCTGCG GGATGACATC CTGAGCAACG
0181 GTCCTTTACT GCCCTTTGGT GAAAATGATT CCGACTCTGA AGTGTGGAAT GCATTCCTGG
0241 AAAAACTGCC CAAGGAGAAG AGAACCTACT TTTCCGTCT- GCTGGCTGTA CGCCGAGTGT
0301 TATATGTACC GCAAAATCTC ATCTATTTTC CGGGCCACAG CCCATCTGGC CGCCTACGAC
0361 TACTTCAGCC AGCAGAAACA GACGGCGACC AAACTGAGCG TGGACGCCAT GCTGGCGGTG
0421 GCCAAGGCTA CGCGGCACAA TGAACGAAAC TCGGACACCT TCCGCCAGTT GATCAAACTC
0481 AATTTGTGGG GCAACCGATG CG |
Assemble Data |
11474R-1.IR_full 1 GCAGANNTTTGCCTACTACACCTTCCGTGTGCGTCTGCCCTCGACCTTGGCCACCATCGC 60
||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
11474R-1.in silico 1 GCAGAGCTTTGCCTACTACACCTTCCGTGTGCGTCTGCCTTCGACCTTGGCCACCATCGC 60
11474R-1.IR_full 61 GGATTCCCTAGTCAAGGACAAGGACGTCCTCCTGGCCACATATGGCGCGGCAGCGGAAGC 120
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11474R-1.in silico 61 GGATTCCCTAGTCAAGGACAAGGACGTCCTCCTGGCCACATATGGCGCGGCAGCGGAAGC 120
11474R-1.IR_full 121 CGANTATTGAACAAACTACAAAGGAGGTTAGACAGCTGCGGGATGACATCCTGAGCAACG 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11474R-1.in silico 121 CGA-TATTGAACAAACTACAAAGGAGGTTAGACAGCTGCGGGATGACATCCTGAGCAACG 180
11474R-1.IR_full 181 GTCCTTTACTGCCCTTTGGTGAAAATGATTCCGATTCTCAAGTGTGGAATGCATTCCTGG 240
|||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
11474R-1.in silico 181 GTCCTTTACTGCCCTTTGGTGAAAATGATTCCGACTCTGAAGTGTGGAATGCATTCCTGG 240
11474R-1.IR_full 241 AAAAACTGCCCAAGGAGAAGAGAACCTACTTTTCCGTCTNGCTGGCTGTACGCCGAGTGT 300
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11474R-1.in silico 241 AAAAACTGCCCAAGGAGAAGAGAACCTACTTTTCCGTCT-GCTGGCTGTACGCCGAGTGT 300
11474R-1.IR_full 301 TATATGTACCGCAAAATCTCATCTATTTTCCGGGCCACAGCCCATCTGGCCGCCTACGAC 360
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11474R-1.in silico 301 TATATGTACCGCAAAATCTCATCTATTTTCCGGGCCACAGCCCATCTGGCCGCCTACGAC 360
11474R-1.IR_full 361 TACTTCAGCCAGCAGAAACAGACGGCGACCAAACTGAGCGTGNANGCCATGCTGGCGGTG 420
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11474R-1.in silico 361 TACTTCAGCCAGCAGAAACAGACGGCGACCAAACTGAGCGTGGACGCCATGCTGGCGGTG 420
11474R-1.IR_full 421 GCCAANNCTNCGCGGCACAATGAACGAAACTCGGACACCTTCCGCCAGTTGATCAAACTC 480
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
11474R-1.in silico 421 GCCAAGGCTACGCGGCACAATGAACGAAACTCGGACACCTTCCGCCAGTTGATCAAACTC 480
11474R-1.IR_full 481 AATTTGTGGGGCAACCGATGCG 502
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11474R-1.in silico 481 AATTTGTGGGGCAACCGATGCG 502
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Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
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cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
100 |
482 |
0 |
0 |
0 |
NM_137790.1 |
CG11474-RA, transcript variant A (CG11474), mRNA |
94.39 |
455 |
2 |
3 |
4 |
NM_166504.1 |
CG11474-RB, transcript variant B (CG11474), mRNA |
0 |
0 |
3 |
3 |
3 |
NM_143662.1 |
CG2177-RA, transcript variant A (CG2177), mRNA |
0 |
0 |
3 |
3 |
3 |
NM_205872.1 |
CG2177-RB, transcript variant B (CG2177), mRNA |
0 |
0 |
3 |
3 |
2 |
NM_135724.2 |
CG5427-RA (Oatp33Ea), mRNA |
0 |
0 |
3 |
2 |
2 |
NM_168144.1 |
CG32409-RA (CG32409), mRNA |
0 |
0 |
2 |
3 |
6 |
NM_137748.2 |
CG10080-RA (CG10080), mRNA |
0 |
0 |
1 |
3 |
6 |
NM_206567.1 |
CG6892-RB, transcript variant B (Ets96B), mRNA |
0 |
0 |
1 |
3 |
6 |
NM_143029.2 |
CG6892-RA, transcript variant A (Ets96B), mRNA |
0 |
0 |
1 |
3 |
5 |
NM_001032272.1 |
CG33785-RA, transcript variant A (CG33785), mRNA |
0 |
0 |
1 |
3 |
5 |
NM_001032273.1 |
CG33786-RA, transcript variant A (CG33786), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_137108.2 |
CG8603-RA, transcript variant A (CG8603), mRNA |
0 |
0 |
1 |
3 |
4 |
NM_166047.1 |
CG8603-RB, transcript variant B (CG8603), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_001043101.1 |
CG3682-RC, transcript variant C (PIP5K59B), mRNA |
0 |
0 |
1 |
3 |
3 |
NM_137885.2 |
CG3682-RA, transcript variant A (PIP5K59B), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_058144.2 |
CG11420-RA (png), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_001032055.1 |
CG17291-RB, transcript variant B (Pp2A-29B), mRNA |
0 |
0 |
1 |
3 |
2 |
NM_001032056.1 |
CG17291-RA, transcript variant A (Pp2A-29B), mRNA |
0 |
0 |
1 |
2 |
4 |
NM_079860.2 |
CG12073-RA (5-HT7), mRNA |
0 |
0 |
1 |
2 |
3 |
NM_137158.2 |
CG10245-RA (Cyp6a20), mRNA |
0 |
0 |
0 |
6 |
4 |
NM_168375.2 |
CG32052-RA (CG32052), mRNA |
0 |
0 |
0 |
5 |
8 |
NM_135239.1 |
CG18304-RA (CG18304), mRNA |
0 |
0 |
0 |
5 |
7 |
NM_169414.1 |
CG17309-RB, transcript variant B (Csk), mRNA |
0 |
0 |
0 |
5 |
7 |
NM_141840.1 |
CG17309-RA, transcript variant A (Csk), mRNA |
0 |
0 |
0 |
5 |
7 |
NM_169416.2 |
CG17309-RD, transcript variant D (Csk), mRNA |
0 |
0 |
0 |
5 |
7 |
NM_169415.2 |
CG17309-RC, transcript variant C (Csk), mRNA |
0 |
0 |
0 |
5 |
7 |
NM_176461.1 |
CG17309-RE, transcript variant E (Csk), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_079324.2 |
CG10975-RA, transcript variant A (Ptp69D), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_176324.1 |
CG10975-RB, transcript variant B (Ptp69D), mRNA |
0 |
0 |
0 |
5 |
6 |
NM_135908.2 |
CG18482-RA (CG18482), mRNA |
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Wing Disc |
GFP
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Puc
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Caspase
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DAPI
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Merge
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Figure
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JNK signal
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Caspase-3 signal
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