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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 11474R-1 
 Symbol CG11474  Full Name CG11474 
 CG No CG11474  Old CG No CG11474 
 Synonyms CG11474 
 Accession No (Link to NCBI) NM_137790.1 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees lethal 
 Map Viewer
 Reference
[Please submit your publication]
Fan W, Lam SM, Xin J, Yang X, Liu Z, Liu Y, Wang Y, Shui G, Huang X.
Drosophila TRF2 and TAF9 regulate lipid droplet size and phospholipid fatty acid composition.
PLoS Genet (2017) 13(3) e1006664 [ PubMed ID = 28273089 ] [ RRC reference ]

Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]

Umemori M, Habara O, Iwata T, Maeda K, Nishinoue K, Okabe A, Takemura M, Takahashi K, Saigo K, Ueda R, Adachi-Yamada T.
RNAi-mediated knockdown showing impaired cell survival in Drosophila wing imaginal disc.
Gene Regul Syst Bio (2009) 3 11-20 [ PubMed ID = 19838331 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgGCAGAGCTTTGCCTACTACAC 
 Primer Seq. 3'
aatctagaggtaccCGCATCGGTTGCCCCACAAAT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 GCAGANNTTT GCCTACTACA CCTTCCGTGT GCGTCTGCCC TCGACCTTGG CCACCATCGC 
0061 GGATTCCCTA GTCAAGGACA AGGACGTCCT CCTGGCCACA TATGGCGCGG CAGCGGAAGC 
0121 CGANTATTGA ACAAACTACA AAGGAGGTTA GACAGCTGCG GGATGACATC CTGAGCAACG 
0181 GTCCTTTACT GCCCTTTGGT GAAAATGATT CCGATTCTCA AGTGTGGAAT GCATTCCTGG 
0241 AAAAACTGCC CAAGGAGAAG AGAACCTACT TTTCCGTCTN GCTGGCTGTA CGCCGAGTGT 
0301 TATATGTACC GCAAAATCTC ATCTATTTTC CGGGCCACAG CCCATCTGGC CGCCTACGAC 
0361 TACTTCAGCC AGCAGAAACA GACGGCGACC AAACTGAGCG TGNANGCCAT GCTGGCGGTG 
0421 GCCaANNCTN CGCGGCACAA TGAACGAAAC TCGGACACCT TCCGCCAGTT GATCAAACTC 
0481 AATTTGTGGG GCAACCGATG CG 
 in silico PCR Fragment
0001 GCAGAGCTTT GCCTACTACA CCTTCCGTGT GCGTCTGCCT TCGACCTTGG CCACCATCGC 
0061 GGATTCCCTA GTCAAGGACA AGGACGTCCT CCTGGCCACA TATGGCGCGG CAGCGGAAGC 
0121 CGA-TATTGA ACAAACTACA AAGGAGGTTA GACAGCTGCG GGATGACATC CTGAGCAACG 
0181 GTCCTTTACT GCCCTTTGGT GAAAATGATT CCGACTCTGA AGTGTGGAAT GCATTCCTGG 
0241 AAAAACTGCC CAAGGAGAAG AGAACCTACT TTTCCGTCT- GCTGGCTGTA CGCCGAGTGT 
0301 TATATGTACC GCAAAATCTC ATCTATTTTC CGGGCCACAG CCCATCTGGC CGCCTACGAC 
0361 TACTTCAGCC AGCAGAAACA GACGGCGACC AAACTGAGCG TGGACGCCAT GCTGGCGGTG 
0421 GCCAAGGCTA CGCGGCACAA TGAACGAAAC TCGGACACCT TCCGCCAGTT GATCAAACTC 
0481 AATTTGTGGG GCAACCGATG CG 
 Assemble Data

11474R-1.IR_full       1   GCAGANNTTTGCCTACTACACCTTCCGTGTGCGTCTGCCCTCGACCTTGGCCACCATCGC 60
                           |||||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||
11474R-1.in silico     1   GCAGAGCTTTGCCTACTACACCTTCCGTGTGCGTCTGCCTTCGACCTTGGCCACCATCGC 60


11474R-1.IR_full       61  GGATTCCCTAGTCAAGGACAAGGACGTCCTCCTGGCCACATATGGCGCGGCAGCGGAAGC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11474R-1.in silico     61  GGATTCCCTAGTCAAGGACAAGGACGTCCTCCTGGCCACATATGGCGCGGCAGCGGAAGC 120


11474R-1.IR_full       121 CGANTATTGAACAAACTACAAAGGAGGTTAGACAGCTGCGGGATGACATCCTGAGCAACG 180
                           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11474R-1.in silico     121 CGA-TATTGAACAAACTACAAAGGAGGTTAGACAGCTGCGGGATGACATCCTGAGCAACG 180


11474R-1.IR_full       181 GTCCTTTACTGCCCTTTGGTGAAAATGATTCCGATTCTCAAGTGTGGAATGCATTCCTGG 240
                           |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
11474R-1.in silico     181 GTCCTTTACTGCCCTTTGGTGAAAATGATTCCGACTCTGAAGTGTGGAATGCATTCCTGG 240


11474R-1.IR_full       241 AAAAACTGCCCAAGGAGAAGAGAACCTACTTTTCCGTCTNGCTGGCTGTACGCCGAGTGT 300
                           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
11474R-1.in silico     241 AAAAACTGCCCAAGGAGAAGAGAACCTACTTTTCCGTCT-GCTGGCTGTACGCCGAGTGT 300


11474R-1.IR_full       301 TATATGTACCGCAAAATCTCATCTATTTTCCGGGCCACAGCCCATCTGGCCGCCTACGAC 360
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11474R-1.in silico     301 TATATGTACCGCAAAATCTCATCTATTTTCCGGGCCACAGCCCATCTGGCCGCCTACGAC 360


11474R-1.IR_full       361 TACTTCAGCCAGCAGAAACAGACGGCGACCAAACTGAGCGTGNANGCCATGCTGGCGGTG 420
                           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
11474R-1.in silico     361 TACTTCAGCCAGCAGAAACAGACGGCGACCAAACTGAGCGTGGACGCCATGCTGGCGGTG 420


11474R-1.IR_full       421 GCCAANNCTNCGCGGCACAATGAACGAAACTCGGACACCTTCCGCCAGTTGATCAAACTC 480
                           |||||  || ||||||||||||||||||||||||||||||||||||||||||||||||||
11474R-1.in silico     421 GCCAAGGCTACGCGGCACAATGAACGAAACTCGGACACCTTCCGCCAGTTGATCAAACTC 480


11474R-1.IR_full       481 AATTTGTGGGGCAACCGATGCG 502
                           ||||||||||||||||||||||
11474R-1.in silico     481 AATTTGTGGGGCAACCGATGCG 502

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_137790.1  CG11474-RA, transcript variant A (CG11474), mRNA 
94.39   455  NM_166504.1  CG11474-RB, transcript variant B (CG11474), mRNA 
0   NM_143662.1  CG2177-RA, transcript variant A (CG2177), mRNA 
0   NM_205872.1  CG2177-RB, transcript variant B (CG2177), mRNA 
0   NM_135724.2  CG5427-RA (Oatp33Ea), mRNA 
0   NM_168144.1  CG32409-RA (CG32409), mRNA 
0   NM_137748.2  CG10080-RA (CG10080), mRNA 
0   NM_206567.1  CG6892-RB, transcript variant B (Ets96B), mRNA 
0   NM_143029.2  CG6892-RA, transcript variant A (Ets96B), mRNA 
0   NM_001032272.1  CG33785-RA, transcript variant A (CG33785), mRNA 
0   NM_001032273.1  CG33786-RA, transcript variant A (CG33786), mRNA 
0   NM_137108.2  CG8603-RA, transcript variant A (CG8603), mRNA 
0   NM_166047.1  CG8603-RB, transcript variant B (CG8603), mRNA 
0   NM_001043101.1  CG3682-RC, transcript variant C (PIP5K59B), mRNA 
0   NM_137885.2  CG3682-RA, transcript variant A (PIP5K59B), mRNA 
0   NM_058144.2  CG11420-RA (png), mRNA 
0   NM_001032055.1  CG17291-RB, transcript variant B (Pp2A-29B), mRNA 
0   NM_001032056.1  CG17291-RA, transcript variant A (Pp2A-29B), mRNA 
0   NM_079860.2  CG12073-RA (5-HT7), mRNA 
0   NM_137158.2  CG10245-RA (Cyp6a20), mRNA 
0   NM_168375.2  CG32052-RA (CG32052), mRNA 
0   NM_135239.1  CG18304-RA (CG18304), mRNA 
0   NM_169414.1  CG17309-RB, transcript variant B (Csk), mRNA 
0   NM_141840.1  CG17309-RA, transcript variant A (Csk), mRNA 
0   NM_169416.2  CG17309-RD, transcript variant D (Csk), mRNA 
0   NM_169415.2  CG17309-RC, transcript variant C (Csk), mRNA 
0   NM_176461.1  CG17309-RE, transcript variant E (Csk), mRNA 
0   NM_079324.2  CG10975-RA, transcript variant A (Ptp69D), mRNA 
0   NM_176324.1  CG10975-RB, transcript variant B (Ptp69D), mRNA 
0   NM_135908.2  CG18482-RA (CG18482), mRNA 
 Wing Disc
GFP
Puc
Caspase
DAPI
Merge
Figure
JNK signal
N
 
DB
+- 
DC
+- 
DM
 
VM
 
VB
 
Caspase-3 signal
N
DB
DC
DM
 
VM
 
VB
 
Dcompartment   Penetrance
     

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