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NIG-RNAi Strains Detail
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Stock Detail (Last Update: November 2007_FlyBase version FB2007_11)
 Stock ID 11444R-1 
 Symbol CG11444  Full Name CG11444 
 CG No CG11444  Old CG No CG11444 
 Synonyms CG11444 
 Accession No (Link to NCBI) NM_131943.2 
 Inserted Chr. lll 
 Insertional Mutation   
 Phenotype induced by Act5C-GAL4 at 28 degrees semi-lethal 
 Map Viewer
 Reference
[Please submit your publication]
Tiwari P, Kumar A, Das RN, Malhotra V, VijayRaghavan K.
A Tendon Cell Specific RNAi Screen Reveals Novel Candidates Essential for Muscle Tendon Interaction.
PLoS One (2015) 10(10) e0140976 [ PubMed ID = 26488612 ] [ RRC reference ]

Rauskolb C, Pan G, Reddy BV, Oh H, Irvine KD.
Zyxin links fat signaling to the hippo pathway.
PLoS Biol (2011) 9(6) e1000624 [ PubMed ID = 21666802 ] [ RRC reference ]  
 Comment  
 Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24)
 Primer Seq. 5'
aaggcctacatggccggaccgATGCCACGAGGAAAGTTCGTC 
 Primer Seq. 3'
aatctagaggtaccTTCTCGTAACGCTGGCGCGCT 
 Predicted Fragment Size
500 
 IR fragment full Seq
0001 ATGCCACGAG GAAAGTTCGT CAACCACAAA GGTCGCAGTC GCCATTTCAC ATCTCCCGAG 
0061 GAACTGCAAC AGGAATCGGA GGAGGATAGC GACCAGACCA GCGGCTCGGG ATCAGATAGC 
0121 GACGATAAAG ACGCTGCCGG CgGCAAAGCC AGTTCCTCTG CGTCCAAAGC CAAGGCACCC 
0181 GCCACACGTA AAGCGCCCGT GAATCGCAAT CAAAAGTCTC GATTCAGCGG CGGGCGcCGG 
0241 TGCGGCAAGT TCCTCGGAAT CGGAGTCTGG CGAGGATTCC GACGATGACT CCGAAGCGGA 
0301 AGCGCNNGAT GCCAAGAAGG GCGTGGCCTC ACTCATCGAA ATCGAGAATN CCAACCGGGT 
0361 GACCAAGAAG GCCACACAAA AGCTATCGGC CATCAAGCTG GACGACGGGC CAgNCGGTGC 
0421 CGGCGGTAAT CCCAAgCCGG AGCTTTCTCG CCgCGAACGC GAACAGATCG AAAAGCAGAG 
0481 AGCGCGCCAG CGTTACGAGA A 
 in silico PCR Fragment
0001 ATGCCACGAG GAAAGTTCGT CAACCACAAA GGTCGCAGTC GCCATTTCAC ATCTCCCGAG 
0061 GAACTGCAAC AGGAATCGGA GGAGGATAGC GACCAGACCA GCGGCTCGGG ATCAGATAGC 
0121 GACGATAAAG ACGCTGCCGG CGGCAAAGCC AGTTCCTCTG CGTCCAAAGC CAAGGCACCC 
0181 GCCACACGTA AAGCGCCCGT GAATCGCAAT CAAAAGTCTC GA-TCAGCGG CGGGCGCCGG 
0241 TGCGGCAAGT TCCTCGGAAT CGGAGTCTGG CGAGGATTCC GACGATGACT CCGAAGCGGA 
0301 AGCGCGCGAT GCCAAGAAGG GCGTGGCCTC ACTCATCGAA ATCGAGAATC CCAACCGGGT 
0361 GACCAAGAAG GCCACACAAA AGCTATCGGC CATCAAGCTG GACGACGGGC CAGCCGGTGC 
0421 CGGCGGTAAT CCCAAGCCGG AGCTTTCTCG CCGCGAACGC GAACAGATCG AAAAGCAGAG 
0481 AGCGCGCCAG CGTTACGAGA A 
 Assemble Data

11444R-1.IR_full       1   ATGCCACGAGGAAAGTTCGTCAACCACAAAGGTCGCAGTCGCCATTTCACATCTCCCGAG 60
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11444R-1.in silico     1   ATGCCACGAGGAAAGTTCGTCAACCACAAAGGTCGCAGTCGCCATTTCACATCTCCCGAG 60


11444R-1.IR_full       61  GAACTGCAACAGGAATCGGAGGAGGATAGCGACCAGACCAGCGGCTCGGGATCAGATAGC 120
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11444R-1.in silico     61  GAACTGCAACAGGAATCGGAGGAGGATAGCGACCAGACCAGCGGCTCGGGATCAGATAGC 120


11444R-1.IR_full       121 GACGATAAAGACGCTGCCGGCGGCAAAGCCAGTTCCTCTGCGTCCAAAGCCAAGGCACCC 180
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11444R-1.in silico     121 GACGATAAAGACGCTGCCGGCGGCAAAGCCAGTTCCTCTGCGTCCAAAGCCAAGGCACCC 180


11444R-1.IR_full       181 GCCACACGTAAAGCGCCCGTGAATCGCAATCAAAAGTCTCGATTCAGCGGCGGGCGCCGG 240
                           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
11444R-1.in silico     181 GCCACACGTAAAGCGCCCGTGAATCGCAATCAAAAGTCTCGA-TCAGCGGCGGGCGCCGG 240


11444R-1.IR_full       241 TGCGGCAAGTTCCTCGGAATCGGAGTCTGGCGAGGATTCCGACGATGACTCCGAAGCGGA 300
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11444R-1.in silico     241 TGCGGCAAGTTCCTCGGAATCGGAGTCTGGCGAGGATTCCGACGATGACTCCGAAGCGGA 300


11444R-1.IR_full       301 AGCGCNNGATGCCAAGAAGGGCGTGGCCTCACTCATCGAAATCGAGAATNCCAACCGGGT 360
                           |||||  |||||||||||||||||||||||||||||||||||||||||| ||||||||||
11444R-1.in silico     301 AGCGCGCGATGCCAAGAAGGGCGTGGCCTCACTCATCGAAATCGAGAATCCCAACCGGGT 360


11444R-1.IR_full       361 GACCAAGAAGGCCACACAAAAGCTATCGGCCATCAAGCTGGACGACGGGCCAGNCGGTGC 420
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
11444R-1.in silico     361 GACCAAGAAGGCCACACAAAAGCTATCGGCCATCAAGCTGGACGACGGGCCAGCCGGTGC 420


11444R-1.IR_full       421 CGGCGGTAATCCCAAGCCGGAGCTTTCTCGCCGCGAACGCGAACAGATCGAAAAGCAGAG 480
                           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11444R-1.in silico     421 CGGCGGTAATCCCAAGCCGGAGCTTTCTCGCCGCGAACGCGAACAGATCGAAAAGCAGAG 480


11444R-1.IR_full       481 AGCGCGCCAGCGTTACGAGAA 501
                           |||||||||||||||||||||
11444R-1.in silico     481 AGCGCGCCAGCGTTACGAGAA 501

 
 Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26)
 Off-target search result

cv : coefficient of variation

(0 mm hits / total siRNA count)

mm : mismatch
cv 0mm 1mm 2mm 3mm target transcript off target name
100   482  NM_131943.2  CG11444-RA (CG11444), mRNA 
0   21  50  46  NM_135442.1  CG4438-RA (CG4438), mRNA 
0   NM_136302.1  CG16937-RA (CG16937), mRNA 
0   NM_165171.2  CG17161-RB, transcript variant B (grp), mRNA 
0   NM_165172.2  CG17161-RC, transcript variant C (grp), mRNA 
0   NM_206000.2  CG4711-RA (squ), mRNA 
0   NM_169827.1  CG31231-RA (CG31231), mRNA 
0   13  NM_143705.2  CG12225-RA (Spt6), mRNA 
0   NM_137527.2  CG15092-RA (CG15092), mRNA 
0   NM_078777.2  CG4675-RA, transcript variant A (Ndae1), mRNA 
0   NM_164744.1  CG4675-RB, transcript variant B (Ndae1), mRNA 
0   NM_078717.2  CG3696-RA, transcript variant A (kis), mRNA 
0   NM_165027.1  CG31849-RA (CG31849), mRNA 
0   NM_168080.1  CG32251-RA (CG32251), mRNA 
0   NM_079098.1  CG3569-RA (Or59b), mRNA 
0   NM_164376.1  CG3696-RB, transcript variant B (kis), mRNA 
0   NM_166318.1  CG15105-RB, transcript variant B (CG15105), mRNA 
0   NM_169256.1  CG11988-RC, transcript variant C (neur), mRNA 
0   NM_169255.1  CG11988-RD, transcript variant D (neur), mRNA 
0   NM_057304.3  CG11988-RA, transcript variant A (neur), mRNA 
0   NM_169257.1  CG11988-RB, transcript variant B (neur), mRNA 
0   NM_137546.2  CG15105-RA, transcript variant A (CG15105), mRNA 
0   NM_134789.1  CG15356-RA (CG15356), mRNA 
0   NM_136556.2  CG14749-RA (CG14749), mRNA 
0   NM_165386.1  CG2201-RA, transcript variant A (CG2201), mRNA 
0   NM_001038842.1  CG2201-RE, transcript variant E (CG2201), mRNA 
0   NM_079661.3  CG5413-RA, transcript variant A (CREG), mRNA 
0   NM_169756.1  CG5413-RB, transcript variant B (CREG), mRNA 
0   NM_165387.1  CG2201-RB, transcript variant B (CG2201), mRNA 
0   NM_132956.1  CG9086-RA (CG9086), mRNA 

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