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Notice:
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Suspension of shipments during Golden Week Holidays: From 30 April to 14 May, deadline 17 April.
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| NIG-RNAi Strains Detail |
| Request : Click the "Order" button to request for this stock |
discarded
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| Stock Detail (Last Update: November 2007_FlyBase version FB2007_11) |
| Stock ID |
11357R-3 |
| Symbol |
CG11357 |
Full Name |
CG11357 |
| CG No |
CG11357 |
Old CG No |
CG11357 |
| Synonyms |
BcDNA:GM04393, CG11357 |
| Accession No (Link to NCBI) |
|
| Inserted Chr. |
lll |
| Insertional Mutation |
lethal |
| Phenotype induced by Act5C-GAL4 at 28 degrees |
viable |
| Map Viewer |
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Reference
[Please submit your publication]
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Yamamoto-Hino M, Yoshida H, Ichimiya T, Sakamura S, Maeda M, Kimura Y, Sasaki N, Aoki-Kinoshita KF, Kinoshita-Toyoda A, Toyoda H, Ueda R, Nishihara S, Goto S.
Phenotype-based clustering of glycosylation-related genes by RNAi-mediated gene silencing.
Genes Cells (2015) 20(6) 521-42
[
PubMed ID = 25940448
]
[
RRC reference
]
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| Comment |
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| Sequence (Last Update: July 10, 2007_NCBI RefSeq Release 24) |
| Primer Seq. 5' |
aaggcctacatggccggaccgAGCGATCGTTGTGCCTGCTGC |
| Primer Seq. 3' |
aatctagaggtaccCTTCAGCGGCGTCTGGTCTAT |
| Predicted Fragment Size |
500 |
| IR fragment full Seq |
|
| in silico PCR Fragment |
|
| Assemble Data |
11357R-3.IR full 1 AGCGATCGTTGTGCCTGCTGCTCATCTGCATCAATCTGTGCCTGGTCATCTGGCTGGTCA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11357R-3.in silico 1 AGCGATCGTTGTGCCTGCTGCTCATCTGCATCAATCTGTGCCTGGTCATCTGGCTGGTCA 60
11357R-3.IR full 61 GTGTGCAGCAGTTAGCNGATGCTGGAAN-GGAAATCATCGCCGATTTTAGCGGAAGTGGC 120
||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||
11357R-3.in silico 61 GTGTGCAGCAGTT-GCCGATGCTGGAAGCGGAAATCATCGCCGATTTTAGCGGAAGTGGC 120
11357R-3.IR full 121 GGCATTAG-AGCAGCAGCACCGCACAGCCGCCAACGAGTGCCAAAAGTGGATTGCGGAGG 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
11357R-3.in silico 121 GGCATTAGCAGCAGCAGCACCGCACAGCCGCCAACGAGTGCCAAAAGTGGATTGCGGAGG 180
11357R-3.IR full 181 AGCAGGAGCCAACCAAACCAAATACACCAGCCTAGTCGCACACCTAGTAATAGTAATGAT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11357R-3.in silico 181 AGCAGGAGCCAACCAAACCAAATACACCAGCCTAGTCGCACACCTAGTAATAGTAATGAT 240
11357R-3.IR full 241 AGTAGCCTAGTTAGCAACACATTCGATAACCACCCCATGGNCACGCCCCCCACTTTGGCG 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
11357R-3.in silico 241 AGTAGCCTAGTTAGCAACACATTCGATAACCACCCCATGGGCACGCCCCCCACTTTGGCG 300
11357R-3.IR full 301 TCACAAACGCCCACGCCGCCACAGAGCAGCATGCACCTCATGGATCTGCCCAATTTCGTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
11357R-3.in silico 301 TCACAAACGCCCACGCCGCCACAGAGCAGCATGCACCTCATGGATCTGCCCAATTTCGTC 360
11357R-3.IR full 361 TATCTAATAGACCAGCCCGCCTGTGATAAGGATGTCCGGGCACTGATATTGGTNCATTCC 420
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11357R-3.in silico 361 TATCTAATAGACCAGCCCGCCTGTGATAAGGATGTCCGGGCACTGATATTGGTCCATTCG 420
11357R-3.IR full 421 TCAGTGCGCAATATCGAAAAGCGCCGGATCATCCGAGAAACGTGTGGCGAATCGGAGCTA 480
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
11357R-3.in silico 421 GCAGTGCGCAATATCGAAAAGCGCCGGATAATCCGAGAAACGTG-GGCGAATCGGAGCTA 480
11357R-3.IR full 481 TATAGACCAGACGCCGCTGAAGG 503
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11357R-3.in silico 481 TATAGACCAGACGCCGCTGAAG- 503
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| Off-target information (Last Update: November 4, 2007_NCBI RefSeq Release 26) |
Off-target search result
cv : coefficient of variation
(0 mm hits / total siRNA count)
mm : mismatch
|
| cv |
0mm |
1mm |
2mm |
3mm |
target transcript |
off target name |
| 100 |
482 |
0 |
0 |
0 |
NM_139659.1 |
CG11357-RA (CG11357), mRNA |
| 0.41 |
2 |
2 |
2 |
5 |
NM_079268.2 |
Kinesin-like protein at 67A CG10923-RA (Klp67A), mRNA |
| 0 |
0 |
7 |
7 |
25 |
NM_141280.2 |
CG14669-RA (CG14669), mRNA |
| 0 |
0 |
7 |
5 |
2 |
NM_057346.3 |
asense CG3258-RA (ase), mRNA |
| 0 |
0 |
5 |
2 |
5 |
NM_142425.2 |
cadmus CG7212-RA (cdm), mRNA |
| 0 |
0 |
4 |
4 |
11 |
NM_167402.1 |
narrow abdomen CG1517-RC, transcript variant C (na), mRNA |
| 0 |
0 |
4 |
4 |
11 |
NM_167401.1 |
narrow abdomen CG1517-RB, transcript variant B (na), mRNA |
| 0 |
0 |
4 |
3 |
10 |
NM_080303.2 |
wings apart-like CG3707-RA, transcript variant A (wapl), mRNA |
| 0 |
0 |
4 |
3 |
7 |
NM_166931.1 |
wings apart-like CG3707-RB, transcript variant B (wapl), mRNA |
| 0 |
0 |
3 |
4 |
12 |
NM_136724.1 |
CG12911-RA (CG12911), mRNA |
| 0 |
0 |
3 |
2 |
2 |
NM_137605.2 |
CG13872-RA (CG13872), mRNA |
| 0 |
0 |
2 |
10 |
106 |
NM_166030.1 |
mastermind CG8118-RB, transcript variant B (mam), mRNA |
| 0 |
0 |
2 |
10 |
106 |
NM_080376.1 |
mastermind CG8118-RA, transcript variant A (mam), mRNA |
| 0 |
0 |
2 |
6 |
17 |
NM_139536.1 |
CG11505-RB, transcript variant B (CG11505), mRNA |
| 0 |
0 |
2 |
5 |
4 |
NM_136505.2 |
CG8713-RA (CG8713), mRNA |
| 0 |
0 |
2 |
4 |
20 |
NM_166961.1 |
dunce CG32498-RI, transcript variant I (dnc), mRNA |
| 0 |
0 |
2 |
4 |
20 |
NM_166965.1 |
dunce CG32498-RJ, transcript variant J (dnc), mRNA |
| 0 |
0 |
2 |
4 |
20 |
NM_166963.1 |
dunce CG32498-RK, transcript variant K (dnc), mRNA |
| 0 |
0 |
2 |
4 |
20 |
NM_166964.1 |
dunce CG32498-RD, transcript variant D (dnc), mRNA |
| 0 |
0 |
2 |
4 |
20 |
NM_166962.1 |
dunce CG32498-RC, transcript variant C (dnc), mRNA |
| 0 |
0 |
2 |
3 |
15 |
NM_168007.1 |
CG11505-RA, transcript variant A (CG11505), mRNA |
| 0 |
0 |
2 |
3 |
8 |
NM_132794.2 |
CG18210-RA (CG18210), mRNA |
| 0 |
0 |
2 |
3 |
4 |
NM_134689.1 |
CG2794-RA (CG2794), mRNA |
| 0 |
0 |
2 |
2 |
3 |
NM_134478.1 |
CG14219-RA (CG14219), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_140110.2 |
CG8108-RB, transcript variant B (CG8108), mRNA |
| 0 |
0 |
2 |
2 |
2 |
NM_168386.1 |
CG8108-RA, transcript variant A (CG8108), mRNA |
| 0 |
0 |
1 |
15 |
27 |
NM_136857.2 |
thisbe CG12443-RA (ths), mRNA |
| 0 |
0 |
1 |
7 |
35 |
NM_078516.2 |
Checkpoint suppressor homologue CG12690-RA (CHES-1-like), mRNA |
| 0 |
0 |
1 |
5 |
12 |
NM_135199.2 |
CG31637-RA (CG31637), mRNA |
| 0 |
0 |
1 |
5 |
4 |
NM_168725.2 |
CG13731-RA (CG13731), mRNA |
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